Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00160 and HGI48_RS00165 are separated by 323 nucleotides HGI48_RS00165 and HGI48_RS00170 are separated by 353 nucleotides
HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965
_RS00160
HGI48_RS00165: HGI48_RS00165 - valine--pyruvate transaminase, at 42,289 to 43,545
_RS00165
HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107
_RS00170
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.298 kb on + strand, within HGI48_RS00160 at 41.487 kb on + strand at 41.487 kb on + strand, within HGI48_RS00160 at 41.488 kb on - strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.667 kb on + strand, within HGI48_RS00160 at 41.668 kb on - strand, within HGI48_RS00160 at 41.668 kb on - strand at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.743 kb on - strand, within HGI48_RS00160 at 41.758 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.807 kb on - strand at 41.808 kb on + strand at 41.808 kb on + strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.838 kb on + strand at 41.839 kb on - strand at 41.839 kb on - strand at 41.900 kb on + strand at 41.921 kb on + strand at 41.922 kb on - strand at 41.979 kb on + strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.083 kb on - strand at 42.083 kb on - strand at 42.099 kb on - strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.117 kb on - strand at 42.117 kb on - strand at 42.182 kb on - strand at 42.182 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.193 kb on + strand at 42.193 kb on + strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.250 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.434 kb on + strand at 42.434 kb on + strand, within HGI48_RS00165 at 42.434 kb on + strand at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.479 kb on + strand, within HGI48_RS00165 at 42.576 kb on - strand, within HGI48_RS00165 at 42.618 kb on - strand, within HGI48_RS00165 at 42.861 kb on + strand at 42.862 kb on - strand, within HGI48_RS00165 at 42.884 kb on + strand, within HGI48_RS00165 at 43.046 kb on + strand at 43.046 kb on + strand, within HGI48_RS00165 at 43.047 kb on - strand, within HGI48_RS00165 at 43.211 kb on + strand, within HGI48_RS00165 at 43.248 kb on + strand, within HGI48_RS00165 at 43.249 kb on - strand, within HGI48_RS00165 at 43.337 kb on + strand, within HGI48_RS00165 at 43.400 kb on + strand, within HGI48_RS00165 at 43.419 kb on + strand, within HGI48_RS00165 at 43.497 kb on + strand at 43.545 kb on + strand at 43.545 kb on + strand at 43.546 kb on - strand at 43.546 kb on - strand at 43.574 kb on + strand at 43.575 kb on - strand at 43.667 kb on - strand at 43.674 kb on + strand at 43.674 kb on + strand at 43.675 kb on - strand at 43.740 kb on + strand at 43.743 kb on + strand at 43.799 kb on - strand at 43.848 kb on + strand at 43.856 kb on + strand at 43.856 kb on + strand at 43.918 kb on + strand at 43.919 kb on - strand at 43.922 kb on + strand at 43.923 kb on - strand at 43.923 kb on - strand at 44.212 kb on + strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.350 kb on - strand at 44.375 kb on + strand, within HGI48_RS00170 at 44.421 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 41,298 + HGI48_RS00160 0.59 +1.3 41,487 + +1.1 41,487 + HGI48_RS00160 0.71 -0.5 41,488 - HGI48_RS00160 0.71 +1.1 41,529 + HGI48_RS00160 0.73 +0.3 41,529 + HGI48_RS00160 0.73 -0.4 41,529 + HGI48_RS00160 0.73 -0.4 41,529 + HGI48_RS00160 0.73 -2.4 41,529 + HGI48_RS00160 0.73 -0.7 41,530 - HGI48_RS00160 0.73 -1.1 41,530 - HGI48_RS00160 0.73 -0.8 41,530 - HGI48_RS00160 0.73 -0.4 41,530 - HGI48_RS00160 0.73 +1.2 41,667 + HGI48_RS00160 0.82 -0.9 41,668 - HGI48_RS00160 0.82 -1.8 41,668 - +0.5 41,742 + HGI48_RS00160 0.86 +0.2 41,742 + HGI48_RS00160 0.86 +1.1 41,742 + HGI48_RS00160 0.86 +0.2 41,743 - HGI48_RS00160 0.86 -0.5 41,758 + +0.5 41,806 + -0.5 41,806 + -1.8 41,806 + -1.8 41,807 - +1.1 41,808 + -2.3 41,808 + -0.9 41,809 - -0.2 41,809 - -2.4 41,809 - -0.1 41,809 - +1.1 41,838 + +2.9 41,839 - -0.3 41,839 - +0.2 41,900 + -0.7 41,921 + +1.6 41,922 - +0.3 41,979 + -1.2 42,058 - -0.5 42,058 - -0.7 42,058 - -0.7 42,082 + +1.6 42,082 + -1.9 42,082 + +0.4 42,083 - +0.3 42,083 - +0.2 42,099 - -0.9 42,112 + -1.3 42,112 + -1.3 42,112 + +0.5 42,112 + +0.8 42,112 + -1.5 42,112 + -0.5 42,113 - +0.5 42,113 - +0.2 42,113 - +0.6 42,116 + +0.1 42,116 + +0.1 42,116 + +0.1 42,116 + +0.7 42,117 - -2.1 42,117 - -1.4 42,182 - -0.5 42,182 - -1.3 42,190 - -0.8 42,190 - -0.4 42,190 - +0.5 42,193 + +0.2 42,193 + +0.6 42,194 - +0.1 42,194 - -0.6 42,194 - -1.1 42,250 + +1.1 42,374 + +0.1 42,374 + +1.1 42,374 + +1.1 42,374 + +0.3 42,374 + -0.5 42,374 + -1.8 42,374 + +0.8 42,374 + -0.5 42,374 + +0.3 42,374 + +1.4 42,374 + +1.6 42,374 + +0.6 42,374 + -1.1 42,375 - -0.5 42,375 - +0.1 42,375 - +0.2 42,375 - -0.1 42,375 - -1.5 42,375 - +1.9 42,375 - +1.8 42,375 - +0.1 42,434 + -0.5 42,434 + HGI48_RS00165 0.12 -2.3 42,434 + -0.5 42,435 - HGI48_RS00165 0.12 +0.5 42,435 - HGI48_RS00165 0.12 +0.4 42,435 - HGI48_RS00165 0.12 +0.0 42,479 + HGI48_RS00165 0.15 -0.3 42,576 - HGI48_RS00165 0.23 -0.3 42,618 - HGI48_RS00165 0.26 -1.8 42,861 + +2.6 42,862 - HGI48_RS00165 0.46 -0.3 42,884 + HGI48_RS00165 0.47 -1.4 43,046 + +1.1 43,046 + HGI48_RS00165 0.60 -0.9 43,047 - HGI48_RS00165 0.60 +2.6 43,211 + HGI48_RS00165 0.73 -1.5 43,248 + HGI48_RS00165 0.76 -1.1 43,249 - HGI48_RS00165 0.76 +0.1 43,337 + HGI48_RS00165 0.83 -1.5 43,400 + HGI48_RS00165 0.88 -0.4 43,419 + HGI48_RS00165 0.90 +0.5 43,497 + -0.5 43,545 + +0.6 43,545 + +0.7 43,546 - +0.9 43,546 - +0.3 43,574 + -1.8 43,575 - -0.8 43,667 - +0.6 43,674 + +0.1 43,674 + -0.5 43,675 - -0.9 43,740 + -0.4 43,743 + +1.6 43,799 - -1.5 43,848 + +0.2 43,856 + +0.9 43,856 + -0.2 43,918 + +1.6 43,919 - -1.3 43,922 + +1.5 43,923 - +0.1 43,923 - +1.2 44,212 + HGI48_RS00170 0.26 -0.3 44,241 - HGI48_RS00170 0.28 -1.3 44,241 - HGI48_RS00170 0.28 -1.5 44,349 + HGI48_RS00170 0.37 -0.7 44,349 + HGI48_RS00170 0.37 -0.4 44,350 - -0.5 44,375 + HGI48_RS00170 0.39 +1.2 44,421 + HGI48_RS00170 0.43 -2.9 44,499 + HGI48_RS00170 0.50 -1.9 44,499 + HGI48_RS00170 0.50 -0.2 44,499 + HGI48_RS00170 0.50 +1.6 44,499 + HGI48_RS00170 0.50 -0.7 44,499 + HGI48_RS00170 0.50 -0.2 44,500 - HGI48_RS00170 0.50 -1.2 44,500 - HGI48_RS00170 0.50 +0.1 44,500 - HGI48_RS00170 0.50 +0.1 44,500 - HGI48_RS00170 0.50 -1.9 44,503 + HGI48_RS00170 0.50 -2.4 44,503 + HGI48_RS00170 0.50 +0.1 44,503 + HGI48_RS00170 0.50 +0.6
Or see this region's nucleotide sequence