Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21200

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,730,565	+		HGI48_RS21195	0.56	-2.3
4,730,566	-		HGI48_RS21195	0.56	-0.0
4,730,566	-		HGI48_RS21195	0.56	-0.6
4,730,566	-		HGI48_RS21195	0.56	+0.3
4,730,566	-		HGI48_RS21195	0.56	-1.3
4,730,566	-		HGI48_RS21195	0.56	+0.3
4,730,566	-		HGI48_RS21195	0.56	-1.0
4,730,568	+		HGI48_RS21195	0.56	-0.2
4,730,569	-		HGI48_RS21195	0.56	-0.8
4,730,569	-		HGI48_RS21195	0.56	-0.3
4,730,697	+		HGI48_RS21195	0.65	-0.6
4,730,697	+		HGI48_RS21195	0.65	-0.9
4,730,698	-		HGI48_RS21195	0.66	-0.2
4,730,698	-		HGI48_RS21195	0.66	-0.6
4,730,698	-		HGI48_RS21195	0.66	-1.0
4,730,698	-		HGI48_RS21195	0.66	-0.2
4,730,766	-		HGI48_RS21195	0.70	-0.3
4,730,766	-		HGI48_RS21195	0.70	+1.2
4,730,832	+		HGI48_RS21195	0.75	-1.2
4,730,832	+		HGI48_RS21195	0.75	+0.2
4,730,832	+		HGI48_RS21195	0.75	-2.7
4,730,833	-		HGI48_RS21195	0.75	+0.0
4,730,833	-		HGI48_RS21195	0.75	+1.9
4,730,833	-		HGI48_RS21195	0.75	+0.5
4,730,833	-		HGI48_RS21195	0.75	+0.0
4,730,875	+		HGI48_RS21195	0.78	+0.1
4,730,899	+		HGI48_RS21195	0.80	-1.6
4,730,900	-		HGI48_RS21195	0.80	-0.6
4,730,900	-		HGI48_RS21195	0.80	-1.2
4,730,975	+		HGI48_RS21195	0.85	-0.2
4,730,975	+		HGI48_RS21195	0.85	+0.3
4,730,975	+		HGI48_RS21195	0.85	-2.0
4,730,975	+		HGI48_RS21195	0.85	+1.7
4,730,975	+		HGI48_RS21195	0.85	+1.0
4,730,975	+		HGI48_RS21195	0.85	-1.8
4,730,975	+				-0.6
4,730,975	+		HGI48_RS21195	0.85	+0.1
4,730,976	-		HGI48_RS21195	0.86	-1.6
4,730,976	-		HGI48_RS21195	0.86	-2.9
4,730,976	-				-0.6
4,730,976	-		HGI48_RS21195	0.86	-0.6
4,730,976	-		HGI48_RS21195	0.86	-0.2
4,730,976	-		HGI48_RS21195	0.86	-1.2
4,731,174	+				+0.0
4,731,203	+				-1.3
4,731,204	-				-0.1
4,731,204	-				+0.7
4,731,210	+				+1.4
4,731,210	+				+1.0
4,731,210	+				+1.4
4,731,210	+				+1.7
4,731,210	+				+0.9
4,731,211	-				+1.0
4,731,211	-				+0.2
4,731,211	-				+0.3
4,731,211	-				-0.5
4,731,213	+				-1.8
4,731,214	-				+0.3
4,731,214	-				-1.8
4,731,214	-				+0.7
4,731,227	+				-0.6
4,731,228	+				-0.9
4,731,228	+				-1.8
4,731,228	+				-0.9
4,731,228	+				-1.3
4,731,228	+				+0.4
4,731,228	+				+0.4
4,731,228	+				+1.0
4,731,228	+				+0.2
4,731,228	+				-0.7
4,731,229	-				+0.8
4,731,229	-				-1.6
4,731,229	-				-0.6
4,731,229	-				-1.3
4,731,229	-				+0.4
4,731,229	-				+1.0
4,731,229	-				+0.4
4,731,230	+				-1.8
4,731,230	+				+0.4
4,731,231	-				-0.5
4,731,236	-				+0.3
4,731,236	-				-0.3
4,731,323	-				+0.8
4,731,323	-				-0.2
4,731,355	-				+0.0
4,731,355	-				+0.3
4,731,363	-				-0.6
4,731,410	+				+1.7
4,731,410	+				-1.5
4,731,411	-				+1.0
4,731,419	+				+0.8
4,731,419	+				-1.3
4,731,419	+				+1.2
4,731,421	+				+0.4
4,731,421	+				+0.4
4,731,421	+				-1.1
4,731,421	+				-1.5
4,731,434	+				-2.2
4,731,435	-				+2.0
4,731,438	+				-1.0
4,731,438	+				-0.0
4,731,438	+				+1.2
4,731,439	-				-0.1
4,731,439	-				-0.6
4,731,439	-				+1.0
4,731,439	-				-1.6
4,731,450	+				-1.8
4,731,450	+				-2.0
4,731,450	+				-0.7
4,731,450	+				-2.3
4,731,450	+				+0.0
4,731,451	-				+0.7
4,731,455	+				-0.8
4,731,455	+				-1.2
4,731,455	+				-0.6
4,731,456	-				-2.1
4,731,479	+				+1.0
4,731,519	+				-1.3
4,731,520	-				-1.6
4,731,520	-				+0.7
4,731,520	-				-1.8
4,731,563	-				-0.4
4,731,563	-				-1.5
4,731,591	+				-0.4
4,731,591	+				+0.6
4,731,592	-				+0.0
4,731,592	-				-2.0
4,731,592	-				-0.1
4,731,592	-				+1.4
4,731,592	-				+1.4
4,731,595	+				-1.3
4,731,595	+				-1.8
4,731,596	-				-0.5
4,731,596	-				+0.1
4,731,596	-				-0.2
4,731,596	-				+0.0
4,731,626	+				-0.6
4,731,626	+				-1.6
4,731,626	+				+0.0
4,731,626	+				-0.3
4,731,626	+				+0.0
4,731,626	+				+0.6
4,731,626	+				+2.0
4,731,627	-				+1.0
4,731,665	-				-2.3
4,731,665	-				-1.6
4,731,869	+		HGI48_RS21200	0.20	-2.5
4,731,870	-		HGI48_RS21200	0.20	-1.0
4,731,870	-		HGI48_RS21200	0.20	+0.9
4,731,870	-		HGI48_RS21200	0.20	+1.2
4,731,870	-		HGI48_RS21200	0.20	-1.0
4,731,959	-		HGI48_RS21200	0.25	-1.6
4,731,959	-		HGI48_RS21200	0.25	-1.3
4,731,969	-		HGI48_RS21200	0.25	-0.1
4,731,971	+		HGI48_RS21200	0.26	-0.8
4,731,996	+		HGI48_RS21200	0.27	+1.0
4,731,997	-		HGI48_RS21200	0.27	-0.3
4,732,072	+		HGI48_RS21200	0.31	+1.8
4,732,072	+		HGI48_RS21200	0.31	+0.7
4,732,072	+		HGI48_RS21200	0.31	+0.6
4,732,072	+		HGI48_RS21200	0.31	+0.0
4,732,072	+		HGI48_RS21200	0.31	-1.5
4,732,072	+		HGI48_RS21200	0.31	-1.8
4,732,073	-		HGI48_RS21200	0.31	-1.3
4,732,073	-		HGI48_RS21200	0.31	-1.3
4,732,073	-		HGI48_RS21200	0.31	-1.6
4,732,073	-		HGI48_RS21200	0.31	+1.0
4,732,075	+		HGI48_RS21200	0.32	+0.5
4,732,075	+		HGI48_RS21200	0.32	-0.3
4,732,075	+		HGI48_RS21200	0.32	+0.0
4,732,075	+		HGI48_RS21200	0.32	+0.3
4,732,076	-		HGI48_RS21200	0.32	-1.8
4,732,076	-		HGI48_RS21200	0.32	+0.3
4,732,076	-		HGI48_RS21200	0.32	-0.3
4,732,076	-		HGI48_RS21200	0.32	+0.0
4,732,076	-		HGI48_RS21200	0.32	-1.0
4,732,076	-		HGI48_RS21200	0.32	-0.2
4,732,076	-		HGI48_RS21200	0.32	-2.0
4,732,076	-		HGI48_RS21200	0.32	-1.7
4,732,076	-		HGI48_RS21200	0.32	+1.0
4,732,076	-		HGI48_RS21200	0.32	+1.4
4,732,076	-		HGI48_RS21200	0.32	+0.0
4,732,076	-		HGI48_RS21200	0.32	-1.6
4,732,078	+		HGI48_RS21200	0.32	+0.2
4,732,078	+		HGI48_RS21200	0.32	-0.7
4,732,078	+		HGI48_RS21200	0.32	-2.2
4,732,079	-		HGI48_RS21200	0.32	+0.0
4,732,079	-		HGI48_RS21200	0.32	-1.6
4,732,079	-		HGI48_RS21200	0.32	+0.2
4,732,079	-		HGI48_RS21200	0.32	-1.3
4,732,079	-		HGI48_RS21200	0.32	+0.2
4,732,079	-		HGI48_RS21200	0.32	+0.0
4,732,079	-		HGI48_RS21200	0.32	-0.1
4,732,079	-		HGI48_RS21200	0.32	+0.9
4,732,079	-		HGI48_RS21200	0.32	+0.2
4,732,605	+		HGI48_RS21200	0.62	-0.3
4,732,606	-				-0.6
4,732,606	-		HGI48_RS21200	0.62	-1.3
4,732,697	+		HGI48_RS21200	0.67	+1.9
4,732,697	+		HGI48_RS21200	0.67	-0.8
4,732,698	-		HGI48_RS21200	0.67	+1.3
4,732,712	+		HGI48_RS21200	0.68	-0.7
4,732,713	-		HGI48_RS21200	0.68	+0.3
4,733,083	+		HGI48_RS21200	0.89	+0.6
4,733,083	+		HGI48_RS21200	0.89	-0.3
4,733,083	+		HGI48_RS21200	0.89	+0.6
4,733,083	+		HGI48_RS21200	0.89	+1.3
4,733,084	-		HGI48_RS21200	0.89	+0.0
4,733,084	-		HGI48_RS21200	0.89	-0.4
4,733,084	-		HGI48_RS21200	0.89	-1.0
4,733,084	-				+1.4
4,733,268	+				-1.6
4,733,284	+				+0.6
4,733,284	+				+0.4
4,733,285	-				+0.0
4,733,317	+				-0.6
4,733,317	+				+1.2
4,733,317	+				-1.0
4,733,317	+				-2.0
4,733,317	+				+3.2
4,733,317	+				+0.5
4,733,317	+				-1.2
4,733,317	+				+0.0
4,733,317	+				-0.0
4,733,317	+				-0.8
4,733,317	+				-0.5
4,733,318	-				-1.4
4,733,318	-				+1.7
4,733,318	-				-0.8
4,733,318	-				+0.0
4,733,318	-				+1.4
4,733,318	-				-1.1
4,733,318	-				-1.2
4,733,318	-				-1.8
4,733,318	-				+0.0
4,733,318	-				-0.6
4,733,318	-				+0.0
4,733,319	+				-0.9
4,733,320	-				+0.5
4,733,396	+				-0.7
4,733,396	+				-1.3
4,733,396	+				+1.2
4,733,396	+				+0.6
4,733,397	-				+1.6
4,733,397	-				-0.3
4,733,397	-				-0.6
4,733,397	-				+0.0
4,733,397	-				-1.3
4,733,397	-				+0.4
4,733,397	-				+0.8
4,733,397	-				-1.1
4,733,397	-				-1.3
4,733,400	+				-0.4
4,733,400	+				+0.4
4,733,400	+				+0.0
4,733,400	+				-0.6
4,733,400	+				+1.0
4,733,401	-				-1.6
4,733,577	+		HGI48_RS21205	0.26	-1.2
4,733,619	+		HGI48_RS21205	0.30	-0.8
4,733,674	-				-0.6
4,733,674	-		HGI48_RS21205	0.36	+1.3
4,733,674	-		HGI48_RS21205	0.36	-0.5
4,733,674	-		HGI48_RS21205	0.36	+0.1
4,733,674	-		HGI48_RS21205	0.36	+1.0
4,733,733	-				+1.7
4,733,850	+		HGI48_RS21205	0.55	+0.0
4,734,064	+		HGI48_RS21205	0.77	-0.3
4,734,065	-		HGI48_RS21205	0.77	-0.3
4,734,117	+		HGI48_RS21205	0.83	-0.8
4,734,117	+		HGI48_RS21205	0.83	-0.4
4,734,117	+		HGI48_RS21205	0.83	-1.8
4,734,162	-		HGI48_RS21205	0.88	-1.4
4,734,162	-		HGI48_RS21205	0.88	+0.0
4,734,201	+				+0.1
4,734,230	+				-1.0
4,734,230	+				+1.4
4,734,230	+				-1.5
4,734,230	+				-0.2
4,734,230	+				+0.0
4,734,230	+				-1.3
4,734,231	-				-1.0
4,734,231	-				-1.4
4,734,231	-				-0.2
4,734,231	-				-1.2
4,734,231	-				-2.0
4,734,231	-				-0.6
4,734,231	-				-1.0
4,734,269	+				-0.4