Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21080

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,702,980	+		HGI48_RS21070	0.68	-1.6
4,702,980	+		HGI48_RS21070	0.68	+1.9
4,702,980	+		HGI48_RS21070	0.68	-0.2
4,702,980	+		HGI48_RS21070	0.68	-1.2
4,702,980	+		HGI48_RS21070	0.68	-1.3
4,702,981	-		HGI48_RS21070	0.69	+1.4
4,702,981	-		HGI48_RS21070	0.69	+1.7
4,702,981	-		HGI48_RS21070	0.69	+0.9
4,702,981	-		HGI48_RS21070	0.69	+0.0
4,702,981	-		HGI48_RS21070	0.69	+0.4
4,702,986	+		HGI48_RS21070	0.69	+0.2
4,702,986	+		HGI48_RS21070	0.69	+0.1
4,702,986	+		HGI48_RS21070	0.69	+2.3
4,702,987	-		HGI48_RS21070	0.69	+1.7
4,702,987	-		HGI48_RS21070	0.69	+0.3
4,702,987	-		HGI48_RS21070	0.69	+0.0
4,703,112	+		HGI48_RS21070	0.80	-1.3
4,703,113	-		HGI48_RS21070	0.81	+0.6
4,703,113	-		HGI48_RS21070	0.81	-0.2
4,703,113	-		HGI48_RS21070	0.81	+1.2
4,703,113	-		HGI48_RS21070	0.81	-0.8
4,703,114	+		HGI48_RS21070	0.81	-0.6
4,703,114	+		HGI48_RS21070	0.81	+0.6
4,703,149	-				+1.0
4,703,315	+				-0.6
4,703,381	+				+2.2
4,703,406	+				+0.0
4,703,407	-				+0.4
4,703,410	+				-0.7
4,703,411	-				-0.7
4,703,411	-				-2.2
4,703,414	-				+0.1
4,703,425	+				-0.6
4,703,425	+				-1.7
4,703,435	+				+0.8
4,703,435	+				+0.5
4,703,436	-				-0.4
4,703,436	-				-0.8
4,703,726	+				+0.8
4,703,726	+				+1.0
4,703,726	+				+0.7
4,703,726	+				+1.0
4,703,726	+				-0.2
4,703,726	+				+0.6
4,703,727	-				-1.0
4,703,727	-				+0.3
4,703,727	-				-0.2
4,703,727	-				+0.5
4,703,727	-				-1.6
4,703,766	+				+0.9
4,703,770	-				+1.3
4,703,846	+				-1.1
4,703,897	+				-2.0
4,703,912	+				+0.8
4,703,928	-				+0.3
4,703,928	-				+1.1
4,703,929	+				-0.2
4,703,930	-				+0.0
4,703,930	-				-1.6
4,703,930	-				+1.0
4,703,930	-				-0.3
4,703,934	+				-0.3
4,703,935	-				-1.8
4,704,236	+		HGI48_RS21080	0.23	+0.6
4,704,236	+		HGI48_RS21080	0.23	-1.2
4,704,236	+		HGI48_RS21080	0.23	+0.7
4,704,237	-				+0.4
4,704,295	+		HGI48_RS21080	0.28	-0.9
4,704,296	-		HGI48_RS21080	0.28	+1.0
4,704,296	-		HGI48_RS21080	0.28	+1.0
4,704,296	-		HGI48_RS21080	0.28	+0.8
4,704,296	-		HGI48_RS21080	0.28	-0.2
4,704,296	-		HGI48_RS21080	0.28	-2.0
4,704,308	-		HGI48_RS21080	0.29	+0.3
4,704,308	-		HGI48_RS21080	0.29	-2.3
4,704,480	+		HGI48_RS21080	0.41	-1.6
4,704,481	-		HGI48_RS21080	0.41	+1.0
4,704,492	+		HGI48_RS21080	0.42	-0.1
4,704,492	+		HGI48_RS21080	0.42	-1.6
4,704,492	+				+2.8
4,704,492	+		HGI48_RS21080	0.42	+0.4
4,704,492	+		HGI48_RS21080	0.42	-0.1
4,704,492	+		HGI48_RS21080	0.42	-0.8
4,704,492	+		HGI48_RS21080	0.42	-0.1
4,704,492	+		HGI48_RS21080	0.42	+0.0
4,704,492	+				-0.6
4,704,492	+		HGI48_RS21080	0.42	-0.7
4,704,492	+		HGI48_RS21080	0.42	+0.1
4,704,492	+		HGI48_RS21080	0.42	+0.7
4,704,492	+		HGI48_RS21080	0.42	+1.6
4,704,492	+		HGI48_RS21080	0.42	-1.2
4,704,492	+		HGI48_RS21080	0.42	+0.3
4,704,492	+		HGI48_RS21080	0.42	+0.7
4,704,493	-		HGI48_RS21080	0.42	+1.9
4,704,493	-		HGI48_RS21080	0.42	+1.0
4,704,493	-		HGI48_RS21080	0.42	+0.6
4,704,493	-		HGI48_RS21080	0.42	-1.0
4,704,493	-		HGI48_RS21080	0.42	-0.3
4,704,493	-		HGI48_RS21080	0.42	-2.6
4,704,493	-		HGI48_RS21080	0.42	-1.1
4,704,493	-		HGI48_RS21080	0.42	+0.0
4,704,493	-		HGI48_RS21080	0.42	-1.6
4,704,493	-		HGI48_RS21080	0.42	+0.8
4,704,493	-		HGI48_RS21080	0.42	+0.7
4,704,493	-		HGI48_RS21080	0.42	+0.5
4,704,493	-		HGI48_RS21080	0.42	-2.0
4,704,493	-		HGI48_RS21080	0.42	-1.6
4,704,560	-		HGI48_RS21080	0.47	+1.3
4,704,560	-				+2.3
4,704,630	+		HGI48_RS21080	0.52	-0.7
4,704,690	-		HGI48_RS21080	0.56	-0.5
4,704,748	+		HGI48_RS21080	0.61	-0.8
4,704,858	+		HGI48_RS21080	0.69	-0.6
4,704,858	+				+2.6
4,704,858	+		HGI48_RS21080	0.69	-0.3
4,704,858	+		HGI48_RS21080	0.69	+0.4
4,704,859	-		HGI48_RS21080	0.69	-1.6
4,704,859	-		HGI48_RS21080	0.69	-0.3
4,704,859	-		HGI48_RS21080	0.69	-0.9
4,704,859	-		HGI48_RS21080	0.69	-1.0
4,704,859	-		HGI48_RS21080	0.69	+0.1
4,704,859	-		HGI48_RS21080	0.69	-0.8
4,704,859	-		HGI48_RS21080	0.69	+2.7
4,704,859	-		HGI48_RS21080	0.69	+0.8
4,704,874	+		HGI48_RS21080	0.70	-1.2
4,704,874	+		HGI48_RS21080	0.70	-0.4
4,705,004	-		HGI48_RS21080	0.79	+0.7
4,705,004	-		HGI48_RS21080	0.79	-0.7
4,705,004	-		HGI48_RS21080	0.79	+0.2
4,705,006	+		HGI48_RS21080	0.79	-0.4
4,705,006	+		HGI48_RS21080	0.79	+1.2
4,705,006	+		HGI48_RS21080	0.79	+1.3
4,705,006	+		HGI48_RS21080	0.79	+0.3
4,705,007	-		HGI48_RS21080	0.80	+0.4
4,705,007	-		HGI48_RS21080	0.80	+1.5
4,705,007	-		HGI48_RS21080	0.80	-0.3
4,705,007	-		HGI48_RS21080	0.80	+0.4
4,705,007	-		HGI48_RS21080	0.80	-1.0
4,705,007	-		HGI48_RS21080	0.80	-1.2
4,705,237	+				-1.2
4,705,237	+				+0.7
4,705,265	+				-1.2
4,705,377	+		HGI48_RS21085	0.20	-1.2
4,705,377	+		HGI48_RS21085	0.20	-0.1
4,705,377	+		HGI48_RS21085	0.20	+0.1
4,705,377	+		HGI48_RS21085	0.20	+0.6
4,705,377	+		HGI48_RS21085	0.20	+1.2
4,705,378	-		HGI48_RS21085	0.20	+0.3
4,705,440	+		HGI48_RS21085	0.34	+0.0
4,705,440	+		HGI48_RS21085	0.34	-1.0
4,705,441	-		HGI48_RS21085	0.34	-0.2
4,705,485	+		HGI48_RS21085	0.43	-0.2
4,705,485	+		HGI48_RS21085	0.43	-0.3
4,705,485	+		HGI48_RS21085	0.43	-0.0
4,705,486	-		HGI48_RS21085	0.43	-0.9
4,705,486	-		HGI48_RS21085	0.43	+2.0
4,705,539	+		HGI48_RS21085	0.55	-0.4
4,705,630	+		HGI48_RS21085	0.74	-2.4
4,705,631	-		HGI48_RS21085	0.75	+0.3
4,705,631	-		HGI48_RS21085	0.75	+0.0
4,705,631	-		HGI48_RS21085	0.75	+0.2
4,705,634	+		HGI48_RS21085	0.75	-0.3
4,705,634	+		HGI48_RS21085	0.75	-0.2
4,705,634	+		HGI48_RS21085	0.75	-0.2
4,705,635	-		HGI48_RS21085	0.75	+0.0
4,705,662	+		HGI48_RS21085	0.81	+0.3
4,705,662	+		HGI48_RS21085	0.81	-0.5
4,705,663	-		HGI48_RS21085	0.82	-1.8
4,705,746	+				-1.3
4,705,746	+				+0.0
4,705,746	+				+1.7
4,705,746	+				+0.2
4,705,747	-				+0.3
4,705,747	-				+0.4
4,705,747	-				-0.1
4,705,844	+				+0.3
4,705,850	+				-0.3
4,705,850	+				-0.2
4,705,850	+				+0.4
4,705,850	+				-0.6
4,705,850	+				+0.0
4,705,851	-				-1.3
4,705,851	-				+0.8
4,705,851	-				+0.4
4,705,900	+				-1.0
4,705,900	+				+0.7
4,705,900	+				+1.9
4,705,900	+				+1.5
4,705,900	+				-0.3
4,705,900	+				-1.2
4,705,901	-				-0.9
4,705,914	+		HGI48_RS21090	0.11	+0.6
4,705,915	-		HGI48_RS21090	0.11	-1.5
4,705,915	-		HGI48_RS21090	0.11	+0.0
4,705,915	-		HGI48_RS21090	0.11	+0.4
4,705,915	-		HGI48_RS21090	0.11	+0.1
4,706,007	-				+0.4
4,706,069	+				+0.0
4,706,069	+		HGI48_RS21090	0.25	+0.3
4,706,108	+		HGI48_RS21090	0.29	-0.5
4,706,141	+		HGI48_RS21090	0.32	-1.3
4,706,141	+		HGI48_RS21090	0.32	-0.2
4,706,142	-		HGI48_RS21090	0.32	-1.0
4,706,163	-		HGI48_RS21090	0.34	-0.8
4,706,163	-		HGI48_RS21090	0.34	-0.3
4,706,163	-				+1.7
4,706,163	-		HGI48_RS21090	0.34	-1.0