Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20325

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,544,115	+		HGI48_RS20320	0.47	-0.2
4,544,115	+		HGI48_RS20320	0.47	-1.0
4,544,174	+		HGI48_RS20320	0.52	+0.3
4,544,217	+		HGI48_RS20320	0.55	+2.5
4,544,222	-				+1.0
4,544,222	-		HGI48_RS20320	0.56	-0.3
4,544,239	+		HGI48_RS20320	0.57	-0.9
4,544,239	+		HGI48_RS20320	0.57	-1.8
4,544,257	+		HGI48_RS20320	0.59	+1.7
4,544,257	+		HGI48_RS20320	0.59	+0.6
4,544,258	-		HGI48_RS20320	0.59	+0.6
4,544,298	+		HGI48_RS20320	0.62	+1.9
4,544,303	+		HGI48_RS20320	0.62	-0.3
4,544,304	-		HGI48_RS20320	0.62	+0.3
4,544,304	-		HGI48_RS20320	0.62	+0.1
4,544,381	-		HGI48_RS20320	0.69	-1.0
4,544,436	+		HGI48_RS20320	0.73	+0.8
4,544,436	+		HGI48_RS20320	0.73	-1.3
4,544,436	+		HGI48_RS20320	0.73	-2.8
4,544,437	-		HGI48_RS20320	0.73	-0.6
4,544,437	-		HGI48_RS20320	0.73	+1.6
4,544,437	-		HGI48_RS20320	0.73	+1.0
4,544,437	-		HGI48_RS20320	0.73	+0.2
4,544,437	-		HGI48_RS20320	0.73	+1.0
4,544,437	-		HGI48_RS20320	0.73	+0.5
4,544,437	-		HGI48_RS20320	0.73	+0.3
4,544,447	+		HGI48_RS20320	0.74	-0.3
4,544,459	+		HGI48_RS20320	0.75	+0.3
4,544,460	-		HGI48_RS20320	0.75	-0.6
4,544,460	-		HGI48_RS20320	0.75	+1.0
4,544,460	-		HGI48_RS20320	0.75	-0.1
4,544,464	+		HGI48_RS20320	0.76	-0.9
4,544,464	+		HGI48_RS20320	0.76	-1.3
4,544,465	-		HGI48_RS20320	0.76	-0.5
4,544,465	-		HGI48_RS20320	0.76	+0.3
4,544,468	-		HGI48_RS20320	0.76	+0.0
4,544,609	-		HGI48_RS20320	0.88	-0.7
4,544,731	+				-0.1
4,544,731	+				+0.3
4,544,731	+				-1.6
4,544,731	+				+0.5
4,544,731	+				-0.4
4,544,731	+				-0.6
4,544,732	-				+0.0
4,544,732	-				+0.6
4,544,732	-				-2.2
4,544,732	-				-1.0
4,544,732	-				-0.2
4,544,732	-				-1.6
4,544,759	-				-0.9
4,544,773	+				+1.0
4,544,773	+				+0.7
4,544,773	+				+0.2
4,544,855	+				-0.6
4,544,879	-				+1.0
4,544,883	-				-1.4
4,544,919	+				-0.3
4,544,919	+				+1.6
4,544,919	+				+2.4
4,544,919	+				+0.7
4,544,920	-				-0.1
4,545,021	+				+0.0
4,545,021	+				-0.7
4,545,022	-				+1.2
4,545,023	+				-0.7
4,545,023	+				-0.8
4,545,024	-				-0.6
4,545,024	-				+1.0
4,545,087	+				-1.6
4,545,087	+				-0.8
4,545,088	-				+1.7
4,545,128	+				-0.4
4,545,128	+				-0.1
4,545,128	+				+0.0
4,545,128	+				+1.5
4,545,128	+				+1.0
4,545,129	-				-0.3
4,545,129	-				+0.0
4,545,131	-				+0.6
4,545,131	-				+0.4
4,545,131	-				-0.1
4,545,131	-				-1.3
4,545,182	-				-1.8
4,545,187	+				+0.2
4,545,350	+				+2.2
4,545,350	+				+1.6
4,545,646	+		HGI48_RS20325	0.35	-2.2
4,545,647	-		HGI48_RS20325	0.35	+0.0
4,545,668	-		HGI48_RS20325	0.37	-0.3
4,545,712	+		HGI48_RS20325	0.39	+0.2
4,545,712	+		HGI48_RS20325	0.39	+0.5
4,545,713	-		HGI48_RS20325	0.39	-1.3
4,545,748	+		HGI48_RS20325	0.42	-0.6
4,545,748	+		HGI48_RS20325	0.42	-0.4
4,545,749	-		HGI48_RS20325	0.42	-1.0
4,545,749	-		HGI48_RS20325	0.42	-2.0
4,545,749	-		HGI48_RS20325	0.42	-0.3
4,545,749	-		HGI48_RS20325	0.42	-1.6
4,545,749	-		HGI48_RS20325	0.42	+1.2
4,545,756	+		HGI48_RS20325	0.42	+0.7
4,545,757	-		HGI48_RS20325	0.42	-1.0
4,545,757	-		HGI48_RS20325	0.42	+1.2
4,545,870	+		HGI48_RS20325	0.50	-0.2
4,545,870	+		HGI48_RS20325	0.50	+1.7
4,545,870	+		HGI48_RS20325	0.50	-0.7
4,545,870	+		HGI48_RS20325	0.50	-0.1
4,545,870	+		HGI48_RS20325	0.50	-0.5
4,545,870	+				+1.4
4,545,870	+		HGI48_RS20325	0.50	+0.8
4,545,870	+				+0.0
4,545,871	-		HGI48_RS20325	0.50	-1.0
4,545,871	-		HGI48_RS20325	0.50	+0.6
4,545,871	-		HGI48_RS20325	0.50	-0.3
4,545,871	-		HGI48_RS20325	0.50	-0.4
4,545,871	-		HGI48_RS20325	0.50	-1.8
4,545,871	-		HGI48_RS20325	0.50	-0.3
4,545,871	-				+1.6
4,545,871	-		HGI48_RS20325	0.50	+0.0
4,545,874	+		HGI48_RS20325	0.50	+0.5
4,545,875	-		HGI48_RS20325	0.50	+0.7
4,545,875	-		HGI48_RS20325	0.50	+1.5
4,545,875	-		HGI48_RS20325	0.50	-2.2
4,545,875	-		HGI48_RS20325	0.50	+0.7
4,545,875	-		HGI48_RS20325	0.50	-0.2
4,545,940	+		HGI48_RS20325	0.54	+0.7
4,545,941	-		HGI48_RS20325	0.54	-0.6
4,545,941	-				+0.0
4,545,997	+		HGI48_RS20325	0.58	-1.6
4,545,997	+		HGI48_RS20325	0.58	+2.3
4,545,997	+		HGI48_RS20325	0.58	+1.1
4,545,997	+		HGI48_RS20325	0.58	+2.8
4,545,997	+				-0.6
4,545,997	+		HGI48_RS20325	0.58	+0.2
4,545,997	+		HGI48_RS20325	0.58	-0.2
4,545,997	+		HGI48_RS20325	0.58	+1.7
4,545,997	+		HGI48_RS20325	0.58	-0.2
4,545,998	-		HGI48_RS20325	0.58	-0.9
4,545,998	-		HGI48_RS20325	0.58	-0.7
4,545,998	-		HGI48_RS20325	0.58	+2.8
4,545,998	-		HGI48_RS20325	0.58	-0.6
4,545,998	-		HGI48_RS20325	0.58	-1.6
4,545,998	-		HGI48_RS20325	0.58	-1.9
4,545,998	-		HGI48_RS20325	0.58	-1.6
4,546,044	+		HGI48_RS20325	0.61	+1.2
4,546,045	-		HGI48_RS20325	0.61	-1.6
4,546,169	+		HGI48_RS20325	0.69	-0.7
4,546,169	+		HGI48_RS20325	0.69	-1.8
4,546,170	-		HGI48_RS20325	0.69	-0.7
4,546,189	+		HGI48_RS20325	0.71	+0.8
4,546,190	-		HGI48_RS20325	0.71	-1.3
4,546,190	-				+1.0
4,546,257	+		HGI48_RS20325	0.75	-1.0
4,546,257	+		HGI48_RS20325	0.75	+0.6
4,546,257	+		HGI48_RS20325	0.75	+0.0
4,546,269	+		HGI48_RS20325	0.76	+1.3
4,546,269	+		HGI48_RS20325	0.76	-0.2
4,546,269	+		HGI48_RS20325	0.76	-0.9
4,546,269	+				+2.2
4,546,269	+		HGI48_RS20325	0.76	+0.3
4,546,269	+		HGI48_RS20325	0.76	-2.1
4,546,270	-		HGI48_RS20325	0.76	+0.4
4,546,270	-		HGI48_RS20325	0.76	+0.6
4,546,309	+				-0.6
4,546,309	+		HGI48_RS20325	0.79	-1.6
4,546,309	+		HGI48_RS20325	0.79	+1.0
4,546,332	+		HGI48_RS20325	0.80	-0.2
4,546,344	+		HGI48_RS20325	0.81	+0.6
4,546,345	-		HGI48_RS20325	0.81	+1.0
4,546,369	-				+0.0
4,546,451	+		HGI48_RS20325	0.88	+0.8
4,546,451	+		HGI48_RS20325	0.88	-0.6
4,546,452	-		HGI48_RS20325	0.88	-0.9
4,546,561	+				-1.6
4,546,562	-				+0.0
4,546,586	+				+0.3
4,546,586	+				+0.0
4,546,587	-				-0.6
4,546,594	+				-1.7
4,546,594	+				-0.2
4,546,594	+				-0.0
4,546,594	+				-1.2
4,546,595	-				-1.1
4,546,595	-				-0.6
4,546,595	-				+2.8
4,546,595	-				+0.3
4,546,609	-				+0.1
4,546,655	+				-0.4
4,546,655	+				+0.0
4,546,655	+				+1.5
4,546,655	+				-2.2
4,546,656	-				-0.4
4,546,656	-				+2.0
4,546,656	-				-0.6
4,546,695	-				-0.3
4,546,700	+				-1.6
4,546,700	+				-2.3
4,546,718	+				+0.3
4,546,719	-				+0.0
4,546,719	-				-0.5
4,546,794	+		HGI48_RS20330	0.28	-1.0
4,546,794	+		HGI48_RS20330	0.28	-0.8
4,546,795	-		HGI48_RS20330	0.28	+0.6
4,546,795	-		HGI48_RS20330	0.28	-1.3
4,546,796	+		HGI48_RS20330	0.29	-0.3
4,546,796	+		HGI48_RS20330	0.29	+0.5
4,546,796	+		HGI48_RS20330	0.29	-1.2
4,546,796	+		HGI48_RS20330	0.29	-0.5
4,546,796	+		HGI48_RS20330	0.29	+0.5
4,546,796	+				+1.4
4,546,796	+		HGI48_RS20330	0.29	+0.1
4,546,796	+		HGI48_RS20330	0.29	-1.0
4,546,796	+		HGI48_RS20330	0.29	+0.7
4,546,796	+		HGI48_RS20330	0.29	-2.2
4,546,797	-		HGI48_RS20330	0.29	-0.4
4,546,797	-		HGI48_RS20330	0.29	-0.3
4,546,797	-		HGI48_RS20330	0.29	+0.3
4,546,797	-		HGI48_RS20330	0.29	-0.3
4,546,797	-		HGI48_RS20330	0.29	+0.2
4,546,797	-		HGI48_RS20330	0.29	-0.6
4,546,797	-		HGI48_RS20330	0.29	-1.8
4,546,849	+		HGI48_RS20330	0.44	+0.0
4,546,849	+		HGI48_RS20330	0.44	-0.5
4,546,849	+		HGI48_RS20330	0.44	-1.3
4,546,850	-		HGI48_RS20330	0.45	-0.2
4,546,850	-				+1.0
4,546,850	-		HGI48_RS20330	0.45	-1.6
4,546,911	+		HGI48_RS20330	0.63	+0.0
4,546,950	+		HGI48_RS20330	0.74	+0.7
4,546,957	-		HGI48_RS20330	0.76	-3.4
4,546,988	+		HGI48_RS20330	0.85	-0.2
4,547,040	+				+0.0
4,547,040	+				-1.4
4,547,040	+				-2.0
4,547,040	+				+0.4
4,547,040	+				+0.6
4,547,040	+				-1.8
4,547,041	-				+0.3
4,547,041	-				+0.3
4,547,041	-				-0.3
4,547,041	-				-0.3
4,547,059	+				-0.6
4,547,086	+				-0.6
4,547,087	-				-1.0
4,547,087	-				-0.6
4,547,089	+				-0.6
4,547,089	+				-0.0
4,547,089	+				+0.7
4,547,089	+				-1.0
4,547,089	+				+0.7
4,547,089	+				+0.2
4,547,090	-				-1.6
4,547,090	-				-0.1
4,547,090	-				+0.0
4,547,090	-				+1.6
4,547,090	-				-1.2
4,547,090	-				+4.1
4,547,093	+				+0.6
4,547,094	-				+0.0
4,547,094	-				+0.3
4,547,094	-				-0.8
4,547,123	+				-0.1
4,547,170	+				-0.5
4,547,171	-				-0.3
4,547,232	+				+0.5
4,547,232	+				+0.5
4,547,232	+				-0.4
4,547,233	-				-1.9
4,547,233	-				-0.6
4,547,233	-				-1.3
4,547,233	-				+0.3
4,547,233	-				-0.2
4,547,233	-				+0.2
4,547,262	-		HGI48_RS20335	0.13	+1.5
4,547,318	+		HGI48_RS20335	0.20	-1.3
4,547,318	+		HGI48_RS20335	0.20	-0.2
4,547,319	-		HGI48_RS20335	0.20	-0.1
4,547,319	-		HGI48_RS20335	0.20	-1.4
4,547,387	-				-0.6
4,547,585	+		HGI48_RS20335	0.52	-0.8
4,547,585	+		HGI48_RS20335	0.52	+0.0
4,547,626	+		HGI48_RS20335	0.57	+0.1
4,547,627	-				+1.0