Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20170

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,502,877	-				-1.3
4,502,904	+				+1.6
4,502,904	+				+0.5
4,502,905	-				-1.7
4,502,989	+				+1.9
4,503,012	+				-0.8
4,503,013	-				-0.2
4,503,041	+				+0.0
4,503,131	+				+0.6
4,503,131	+				-0.3
4,503,132	-				-1.5
4,503,132	-				-0.8
4,503,138	-				-0.3
4,503,290	+		HGI48_RS20165	0.21	-0.5
4,503,290	+		HGI48_RS20165	0.21	+0.0
4,503,290	+		HGI48_RS20165	0.21	-0.8
4,503,290	+		HGI48_RS20165	0.21	-1.3
4,503,290	+		HGI48_RS20165	0.21	+0.3
4,503,290	+		HGI48_RS20165	0.21	-1.7
4,503,291	-		HGI48_RS20165	0.21	-2.3
4,503,291	-		HGI48_RS20165	0.21	+0.9
4,503,291	-		HGI48_RS20165	0.21	-1.0
4,503,311	+		HGI48_RS20165	0.24	+0.8
4,503,312	-		HGI48_RS20165	0.24	-0.7
4,503,312	-		HGI48_RS20165	0.24	+0.2
4,503,449	+		HGI48_RS20165	0.42	-0.4
4,503,450	-		HGI48_RS20165	0.43	+0.3
4,503,671	+		HGI48_RS20165	0.72	-1.0
4,503,671	+		HGI48_RS20165	0.72	-0.3
4,503,672	-		HGI48_RS20165	0.73	+0.0
4,503,672	-		HGI48_RS20165	0.73	+0.1
4,503,800	-				+0.0
4,503,852	-				-0.6
4,503,934	+				+1.0
4,503,935	-				+1.4
4,504,037	+		HGI48_RS20170	0.12	+1.9
4,504,158	+		HGI48_RS20170	0.21	-0.5
4,504,159	-		HGI48_RS20170	0.22	-1.6
4,504,216	-		HGI48_RS20170	0.26	-0.9
4,504,234	+		HGI48_RS20170	0.27	+0.7
4,504,234	+		HGI48_RS20170	0.27	+1.7
4,504,234	+		HGI48_RS20170	0.27	-0.8
4,504,235	-		HGI48_RS20170	0.27	-0.9
4,504,235	-		HGI48_RS20170	0.27	-2.3
4,504,235	-		HGI48_RS20170	0.27	-0.6
4,504,258	+		HGI48_RS20170	0.29	-1.6
4,504,258	+		HGI48_RS20170	0.29	-0.2
4,504,258	+		HGI48_RS20170	0.29	-0.2
4,504,259	-		HGI48_RS20170	0.29	-1.5
4,504,259	-		HGI48_RS20170	0.29	-1.1
4,504,259	-				+1.7
4,504,259	-		HGI48_RS20170	0.29	+0.6
4,504,259	-		HGI48_RS20170	0.29	+0.2
4,504,313	+		HGI48_RS20170	0.33	-1.3
4,504,321	+				+2.0
4,504,321	+		HGI48_RS20170	0.34	-0.1
4,504,322	-		HGI48_RS20170	0.34	+0.4
4,504,337	+		HGI48_RS20170	0.35	+0.4
4,504,337	+		HGI48_RS20170	0.35	-0.8
4,504,338	-		HGI48_RS20170	0.35	+0.4
4,504,338	-		HGI48_RS20170	0.35	-1.0
4,504,354	-		HGI48_RS20170	0.36	-2.0
4,504,359	+		HGI48_RS20170	0.36	-0.0
4,504,359	+				+0.0
4,504,427	-		HGI48_RS20170	0.42	-1.0
4,504,427	-		HGI48_RS20170	0.42	+0.0
4,504,428	+		HGI48_RS20170	0.42	-1.3
4,504,438	+		HGI48_RS20170	0.42	-1.3
4,504,438	+		HGI48_RS20170	0.42	-2.3
4,504,438	+		HGI48_RS20170	0.42	+0.6
4,504,438	+		HGI48_RS20170	0.42	-2.0
4,504,458	+				+2.2
4,504,458	+		HGI48_RS20170	0.44	-0.6
4,504,595	+		HGI48_RS20170	0.54	+0.3
4,504,696	+		HGI48_RS20170	0.62	+0.9
4,504,697	-		HGI48_RS20170	0.62	-1.5
4,504,718	+		HGI48_RS20170	0.63	-0.5
4,504,726	+				-0.6
4,504,726	+		HGI48_RS20170	0.64	+0.2
4,504,727	-		HGI48_RS20170	0.64	-0.2
4,504,727	-		HGI48_RS20170	0.64	-0.6
4,504,780	+		HGI48_RS20170	0.68	-0.3
4,504,780	+		HGI48_RS20170	0.68	-0.2
4,504,780	+		HGI48_RS20170	0.68	+0.7
4,504,781	-		HGI48_RS20170	0.68	-0.2
4,504,781	-		HGI48_RS20170	0.68	-0.2
4,504,781	-		HGI48_RS20170	0.68	+0.5
4,504,944	-		HGI48_RS20170	0.80	-1.7
4,504,946	-		HGI48_RS20170	0.80	+1.0
4,504,946	-		HGI48_RS20170	0.80	-0.5
4,504,955	-				+1.0
4,504,955	-		HGI48_RS20170	0.81	+0.0
4,504,955	-		HGI48_RS20170	0.81	+0.5
4,504,957	+		HGI48_RS20170	0.81	+0.0
4,504,957	+		HGI48_RS20170	0.81	-2.8
4,504,957	+		HGI48_RS20170	0.81	+0.3
4,504,957	+		HGI48_RS20170	0.81	+0.0
4,504,957	+				-0.6
4,504,957	+		HGI48_RS20170	0.81	-0.9
4,504,957	+		HGI48_RS20170	0.81	-2.3
4,504,957	+		HGI48_RS20170	0.81	-0.2
4,504,958	-		HGI48_RS20170	0.81	-0.3
4,504,958	-		HGI48_RS20170	0.81	+0.5
4,504,958	-		HGI48_RS20170	0.81	-0.5
4,504,958	-		HGI48_RS20170	0.81	+1.0
4,504,961	+				+3.3
4,504,961	+		HGI48_RS20170	0.81	-1.6
4,504,967	-		HGI48_RS20170	0.82	-1.7
4,504,967	-		HGI48_RS20170	0.82	+1.0
4,504,967	-				+1.0
4,505,044	-		HGI48_RS20170	0.88	-1.3
4,505,068	+		HGI48_RS20170	0.89	-2.0
4,505,069	-		HGI48_RS20170	0.89	-1.0
4,505,084	-				+1.2
4,505,084	-				-1.6
4,505,413	-		HGI48_RS20175	0.19	-0.4
4,505,451	+		HGI48_RS20175	0.23	+1.9
4,505,451	+		HGI48_RS20175	0.23	-0.6
4,505,452	-		HGI48_RS20175	0.23	-0.9
4,505,452	-		HGI48_RS20175	0.23	-1.0
4,505,452	-		HGI48_RS20175	0.23	+1.0
4,505,516	+		HGI48_RS20175	0.29	-1.5
4,505,516	+		HGI48_RS20175	0.29	-1.1
4,505,516	+		HGI48_RS20175	0.29	-1.4
4,505,517	-				-0.6
4,505,517	-		HGI48_RS20175	0.29	+0.7
4,505,603	+		HGI48_RS20175	0.37	+2.1
4,505,603	+				+0.4
4,505,603	+		HGI48_RS20175	0.37	-2.5
4,505,603	+		HGI48_RS20175	0.37	-1.8
4,505,603	+		HGI48_RS20175	0.37	-2.2
4,505,603	+				-0.6
4,505,603	+		HGI48_RS20175	0.37	-0.9
4,505,757	+		HGI48_RS20175	0.51	-0.3
4,505,758	-		HGI48_RS20175	0.51	-0.5
4,505,758	-		HGI48_RS20175	0.51	-0.3
4,505,798	+		HGI48_RS20175	0.55	-0.2
4,505,798	+		HGI48_RS20175	0.55	-1.0
4,505,798	+		HGI48_RS20175	0.55	-1.8
4,505,841	-		HGI48_RS20175	0.59	-0.9
4,505,906	+		HGI48_RS20175	0.65	-0.1
4,505,942	+		HGI48_RS20175	0.68	+0.8
4,505,942	+		HGI48_RS20175	0.68	-0.3
4,505,969	+		HGI48_RS20175	0.71	-1.8
4,505,970	-		HGI48_RS20175	0.71	+0.4
4,506,119	-		HGI48_RS20175	0.84	+0.0