Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19565

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19555 and HGI48_RS19560 are separated by 17 nucleotidesHGI48_RS19560 and HGI48_RS19565 are separated by 388 nucleotidesHGI48_RS19565 and HGI48_RS19570 are separated by 88 nucleotides HGI48_RS19555: HGI48_RS19555 - phosphoribulokinase, at 4,365,696 to 4,366,565 _RS19555 HGI48_RS19560: HGI48_RS19560 - OsmC family protein, at 4,366,583 to 4,367,020 _RS19560 HGI48_RS19565: HGI48_RS19565 - cAMP-activated global transcriptional regulator CRP, at 4,367,409 to 4,368,041 _RS19565 HGI48_RS19570: HGI48_RS19570 - aspartate aminotransferase family protein, at 4,368,130 to 4,369,353 _RS19570 Position (kb) 4367 4368 4369Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4366.515 kb on - strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.557 kb on - strandat 4366.557 kb on - strandat 4366.564 kb on - strandat 4366.656 kb on + strand, within HGI48_RS19560at 4366.656 kb on + strandat 4366.656 kb on + strand, within HGI48_RS19560at 4366.657 kb on - strand, within HGI48_RS19560at 4366.753 kb on + strand, within HGI48_RS19560at 4366.753 kb on + strand, within HGI48_RS19560at 4366.754 kb on - strand, within HGI48_RS19560at 4366.754 kb on - strand, within HGI48_RS19560at 4366.754 kb on - strand, within HGI48_RS19560at 4366.754 kb on - strand, within HGI48_RS19560at 4366.754 kb on - strand, within HGI48_RS19560at 4366.840 kb on - strand, within HGI48_RS19560at 4367.020 kb on + strandat 4367.021 kb on - strandat 4367.021 kb on - strandat 4367.021 kb on - strandat 4367.021 kb on - strandat 4367.021 kb on - strandat 4367.041 kb on - strandat 4367.055 kb on - strandat 4367.083 kb on - strandat 4367.093 kb on + strandat 4367.093 kb on + strandat 4367.094 kb on - strandat 4367.094 kb on - strandat 4367.094 kb on - strandat 4367.094 kb on - strandat 4367.094 kb on - strandat 4367.125 kb on + strandat 4367.125 kb on + strandat 4367.125 kb on + strandat 4367.141 kb on + strandat 4367.155 kb on + strandat 4367.216 kb on + strandat 4367.278 kb on - strandat 4367.292 kb on + strandat 4367.292 kb on + strandat 4367.331 kb on + strandat 4367.335 kb on + strandat 4367.335 kb on + strandat 4367.335 kb on + strandat 4368.043 kb on + strandat 4368.043 kb on + strandat 4368.044 kb on - strandat 4368.108 kb on + strandat 4368.142 kb on + strandat 4368.143 kb on - strandat 4368.143 kb on - strandat 4368.145 kb on + strandat 4368.363 kb on + strand, within HGI48_RS19570at 4368.364 kb on - strand, within HGI48_RS19570at 4368.444 kb on + strand, within HGI48_RS19570at 4368.500 kb on + strand, within HGI48_RS19570at 4368.591 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.630 kb on + strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.631 kb on - strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.632 kb on + strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.633 kb on - strand, within HGI48_RS19570at 4368.818 kb on - strand, within HGI48_RS19570at 4368.965 kb on + strandat 4368.965 kb on + strand, within HGI48_RS19570at 4368.965 kb on + strand, within HGI48_RS19570

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,366,515 - -1.6
4,366,550 + +0.6
4,366,550 + +1.2
4,366,550 + +0.9
4,366,550 + -0.1
4,366,557 - -0.5
4,366,557 - -0.9
4,366,564 - +0.4
4,366,656 + HGI48_RS19560 0.17 -1.1
4,366,656 + +2.9
4,366,656 + HGI48_RS19560 0.17 -0.1
4,366,657 - HGI48_RS19560 0.17 -0.1
4,366,753 + HGI48_RS19560 0.39 +0.1
4,366,753 + HGI48_RS19560 0.39 +0.7
4,366,754 - HGI48_RS19560 0.39 +0.9
4,366,754 - HGI48_RS19560 0.39 +1.3
4,366,754 - HGI48_RS19560 0.39 -0.6
4,366,754 - HGI48_RS19560 0.39 -0.2
4,366,754 - HGI48_RS19560 0.39 -0.5
4,366,840 - HGI48_RS19560 0.59 -0.4
4,367,020 + -0.4
4,367,021 - -1.4
4,367,021 - -0.8
4,367,021 - -1.9
4,367,021 - -1.6
4,367,021 - +0.1
4,367,041 - -0.5
4,367,055 - +0.4
4,367,083 - -0.6
4,367,093 + -2.1
4,367,093 + +0.2
4,367,094 - +0.2
4,367,094 - -2.2
4,367,094 - -1.2
4,367,094 - +0.4
4,367,094 - +1.6
4,367,125 + -1.1
4,367,125 + +0.5
4,367,125 + +0.4
4,367,141 + +0.9
4,367,155 + -1.6
4,367,216 + -1.1
4,367,278 - -0.8
4,367,292 + +0.4
4,367,292 + +0.2
4,367,331 + +0.5
4,367,335 + -0.4
4,367,335 + +3.4
4,367,335 + +1.9
4,368,043 + -0.7
4,368,043 + +0.6
4,368,044 - -1.4
4,368,108 + -0.8
4,368,142 + +0.4
4,368,143 - +0.9
4,368,143 - +0.4
4,368,145 + +1.4
4,368,363 + HGI48_RS19570 0.19 -0.6
4,368,364 - HGI48_RS19570 0.19 -0.1
4,368,444 + HGI48_RS19570 0.26 +0.6
4,368,500 + HGI48_RS19570 0.30 +0.5
4,368,591 + HGI48_RS19570 0.38 -0.4
4,368,630 + HGI48_RS19570 0.41 +0.5
4,368,630 + HGI48_RS19570 0.41 -0.5
4,368,630 + HGI48_RS19570 0.41 -1.6
4,368,630 + HGI48_RS19570 0.41 +0.9
4,368,630 + HGI48_RS19570 0.41 +0.1
4,368,630 + HGI48_RS19570 0.41 -2.1
4,368,630 + HGI48_RS19570 0.41 -1.1
4,368,630 + HGI48_RS19570 0.41 +0.6
4,368,630 + HGI48_RS19570 0.41 +0.0
4,368,631 - HGI48_RS19570 0.41 +1.5
4,368,631 - HGI48_RS19570 0.41 +0.2
4,368,631 - HGI48_RS19570 0.41 +0.5
4,368,631 - HGI48_RS19570 0.41 -0.8
4,368,631 - HGI48_RS19570 0.41 -0.4
4,368,631 - HGI48_RS19570 0.41 +1.1
4,368,632 + HGI48_RS19570 0.41 -2.9
4,368,632 + HGI48_RS19570 0.41 -0.1
4,368,632 + HGI48_RS19570 0.41 -0.6
4,368,632 + HGI48_RS19570 0.41 -0.1
4,368,632 + HGI48_RS19570 0.41 +0.4
4,368,632 + HGI48_RS19570 0.41 -0.2
4,368,632 + HGI48_RS19570 0.41 +0.4
4,368,632 + HGI48_RS19570 0.41 +2.5
4,368,632 + HGI48_RS19570 0.41 -0.4
4,368,632 + HGI48_RS19570 0.41 +0.7
4,368,632 + HGI48_RS19570 0.41 +0.1
4,368,633 - HGI48_RS19570 0.41 +0.8
4,368,633 - HGI48_RS19570 0.41 -0.6
4,368,633 - HGI48_RS19570 0.41 -2.4
4,368,633 - HGI48_RS19570 0.41 +0.3
4,368,633 - HGI48_RS19570 0.41 -1.9
4,368,633 - HGI48_RS19570 0.41 -0.6
4,368,818 - HGI48_RS19570 0.56 +0.9
4,368,965 + +2.5
4,368,965 + HGI48_RS19570 0.68 -0.4
4,368,965 + HGI48_RS19570 0.68 -2.0

Or see this region's nucleotide sequence