Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19230 and HGI48_RS19235 are separated by 102 nucleotides HGI48_RS19235 and HGI48_RS19240 are separated by 60 nucleotides
HGI48_RS19230: HGI48_RS19230 - Trk system potassium transporter TrkA, at 4,318,495 to 4,319,871
_RS19230
HGI48_RS19235: HGI48_RS19235 - large-conductance mechanosensitive channel protein MscL, at 4,319,974 to 4,320,399
_RS19235
HGI48_RS19240: HGI48_RS19240 - IS481 family transposase, at 4,320,460 to 4,321,501
_RS19240
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4318.976 kb on - strand at 4318.979 kb on - strand, within HGI48_RS19230 at 4319.005 kb on - strand, within HGI48_RS19230 at 4319.188 kb on + strand, within HGI48_RS19230 at 4319.200 kb on - strand, within HGI48_RS19230 at 4319.260 kb on - strand, within HGI48_RS19230 at 4319.270 kb on + strand, within HGI48_RS19230 at 4319.393 kb on + strand, within HGI48_RS19230 at 4319.393 kb on + strand, within HGI48_RS19230 at 4319.676 kb on - strand, within HGI48_RS19230 at 4319.678 kb on + strand, within HGI48_RS19230 at 4319.973 kb on + strand at 4319.974 kb on - strand at 4319.974 kb on - strand at 4319.974 kb on - strand at 4319.982 kb on + strand at 4319.984 kb on + strand at 4320.045 kb on + strand, within HGI48_RS19235 at 4320.072 kb on - strand at 4320.083 kb on + strand, within HGI48_RS19235 at 4320.083 kb on + strand at 4320.083 kb on + strand, within HGI48_RS19235 at 4320.084 kb on - strand, within HGI48_RS19235 at 4320.093 kb on + strand, within HGI48_RS19235 at 4320.093 kb on + strand, within HGI48_RS19235 at 4320.094 kb on - strand, within HGI48_RS19235 at 4320.094 kb on - strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.113 kb on + strand, within HGI48_RS19235 at 4320.114 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.175 kb on - strand, within HGI48_RS19235 at 4320.176 kb on + strand, within HGI48_RS19235 at 4320.176 kb on + strand, within HGI48_RS19235 at 4320.177 kb on - strand, within HGI48_RS19235 at 4320.177 kb on - strand, within HGI48_RS19235 at 4320.192 kb on + strand at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.192 kb on + strand, within HGI48_RS19235 at 4320.193 kb on - strand, within HGI48_RS19235 at 4320.196 kb on + strand, within HGI48_RS19235 at 4320.196 kb on + strand at 4320.229 kb on - strand, within HGI48_RS19235 at 4320.274 kb on - strand, within HGI48_RS19235 at 4320.279 kb on - strand, within HGI48_RS19235 at 4320.360 kb on - strand at 4320.408 kb on - strand at 4320.431 kb on - strand at 4320.442 kb on - strand at 4320.444 kb on - strand at 4320.444 kb on - strand at 4320.444 kb on - strand at 4320.899 kb on + strand, within HGI48_RS19240
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,318,976 - +1.4 4,318,979 - HGI48_RS19230 0.35 +0.4 4,319,005 - HGI48_RS19230 0.37 -1.1 4,319,188 + HGI48_RS19230 0.50 -0.3 4,319,200 - HGI48_RS19230 0.51 -1.6 4,319,260 - HGI48_RS19230 0.56 -0.8 4,319,270 + HGI48_RS19230 0.56 -1.6 4,319,393 + HGI48_RS19230 0.65 -0.8 4,319,393 + HGI48_RS19230 0.65 +0.4 4,319,676 - HGI48_RS19230 0.86 -1.6 4,319,678 + HGI48_RS19230 0.86 -1.1 4,319,973 + -1.1 4,319,974 - -0.1 4,319,974 - -0.6 4,319,974 - +0.9 4,319,982 + +0.7 4,319,984 + +2.2 4,320,045 + HGI48_RS19235 0.17 -1.9 4,320,072 - +0.9 4,320,083 + HGI48_RS19235 0.26 -0.1 4,320,083 + +0.9 4,320,083 + HGI48_RS19235 0.26 -0.1 4,320,084 - HGI48_RS19235 0.26 -0.2 4,320,093 + HGI48_RS19235 0.28 +0.5 4,320,093 + HGI48_RS19235 0.28 -0.8 4,320,094 - HGI48_RS19235 0.28 +0.7 4,320,094 - HGI48_RS19235 0.28 +0.1 4,320,113 + HGI48_RS19235 0.33 -1.2 4,320,113 + HGI48_RS19235 0.33 +0.7 4,320,113 + HGI48_RS19235 0.33 -0.2 4,320,114 - HGI48_RS19235 0.33 -0.4 4,320,175 - HGI48_RS19235 0.47 -0.2 4,320,175 - HGI48_RS19235 0.47 -0.1 4,320,175 - HGI48_RS19235 0.47 -1.4 4,320,176 + HGI48_RS19235 0.47 -1.6 4,320,176 + HGI48_RS19235 0.47 +1.9 4,320,177 - HGI48_RS19235 0.48 -0.5 4,320,177 - HGI48_RS19235 0.48 +1.9 4,320,192 + -0.6 4,320,192 + HGI48_RS19235 0.51 -0.3 4,320,192 + HGI48_RS19235 0.51 -1.0 4,320,192 + HGI48_RS19235 0.51 -0.1 4,320,193 - HGI48_RS19235 0.51 +0.3 4,320,196 + HGI48_RS19235 0.52 -0.5 4,320,196 + +0.9 4,320,229 - HGI48_RS19235 0.60 +1.1 4,320,274 - HGI48_RS19235 0.70 -1.1 4,320,279 - HGI48_RS19235 0.72 -0.6 4,320,360 - +0.3 4,320,408 - -1.9 4,320,431 - -0.9 4,320,442 - -0.5 4,320,444 - +0.9 4,320,444 - -1.4 4,320,444 - +0.1 4,320,899 + HGI48_RS19240 0.42 -0.8
Or see this region's nucleotide sequence