Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18980

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,261,250	+		HGI48_RS18970	0.58	-0.1
4,261,287	+		HGI48_RS18970	0.65	-0.1
4,261,320	+		HGI48_RS18970	0.71	+1.1
4,261,372	-		HGI48_RS18970	0.80	-0.4
4,261,376	+		HGI48_RS18970	0.80	-0.0
4,261,426	+		HGI48_RS18970	0.89	-0.9
4,261,426	+		HGI48_RS18970	0.89	-0.1
4,261,426	+		HGI48_RS18970	0.89	-0.3
4,261,427	-		HGI48_RS18970	0.89	+1.2
4,261,427	-				+0.3
4,261,428	+		HGI48_RS18970	0.89	-2.1
4,261,428	+		HGI48_RS18970	0.89	+0.2
4,261,523	+				+0.9
4,261,524	-				-2.1
4,261,524	-				+1.5
4,261,524	-				-0.3
4,261,524	-				+0.9
4,261,524	-				+1.7
4,261,539	+				-1.4
4,261,539	+				-0.2
4,261,540	-				-1.1
4,261,544	+				+0.0
4,261,569	+				+2.9
4,261,570	-				-1.2
4,261,581	+				-0.8
4,261,585	-				-0.4
4,261,643	+		HGI48_RS18975	0.14	+0.3
4,261,643	+		HGI48_RS18975	0.14	-2.2
4,261,644	-		HGI48_RS18975	0.14	+0.5
4,261,648	-		HGI48_RS18975	0.15	+2.3
4,261,656	+		HGI48_RS18975	0.16	-0.8
4,261,657	-		HGI48_RS18975	0.16	+0.7
4,261,657	-				+0.9
4,261,709	+		HGI48_RS18975	0.23	-1.2
4,261,709	+		HGI48_RS18975	0.23	+0.9
4,261,709	+		HGI48_RS18975	0.23	+0.7
4,261,709	+				+1.3
4,261,709	+		HGI48_RS18975	0.23	+0.7
4,261,709	+				+1.3
4,261,709	+				+1.9
4,261,709	+		HGI48_RS18975	0.23	-0.7
4,261,710	-		HGI48_RS18975	0.23	-0.2
4,261,717	+		HGI48_RS18975	0.24	-0.2
4,261,718	-				+0.9
4,261,718	-		HGI48_RS18975	0.25	+0.6
4,261,761	+				+0.9
4,261,761	+				+0.9
4,261,778	-		HGI48_RS18975	0.33	-1.0
4,261,801	-		HGI48_RS18975	0.36	+0.4
4,261,813	+		HGI48_RS18975	0.38	-1.4
4,261,813	+		HGI48_RS18975	0.38	+2.7
4,261,813	+		HGI48_RS18975	0.38	+0.8
4,261,814	-		HGI48_RS18975	0.38	+0.3
4,261,816	+		HGI48_RS18975	0.38	-1.9
4,261,816	+		HGI48_RS18975	0.38	+0.0
4,261,816	+		HGI48_RS18975	0.38	-0.1
4,261,816	+		HGI48_RS18975	0.38	-1.7
4,261,816	+				+0.9
4,261,817	-		HGI48_RS18975	0.38	+0.3
4,261,817	-		HGI48_RS18975	0.38	-0.5
4,261,817	-				+0.9
4,261,817	-		HGI48_RS18975	0.38	+0.8
4,261,817	-		HGI48_RS18975	0.38	-0.7
4,261,817	-		HGI48_RS18975	0.38	-1.1
4,261,957	+		HGI48_RS18975	0.58	-0.1
4,261,958	-		HGI48_RS18975	0.58	-0.5
4,261,958	-		HGI48_RS18975	0.58	-0.7
4,261,958	-		HGI48_RS18975	0.58	+0.9
4,261,978	+		HGI48_RS18975	0.61	-0.1
4,261,979	-		HGI48_RS18975	0.61	-1.9
4,261,980	+		HGI48_RS18975	0.61	-0.3
4,261,980	+		HGI48_RS18975	0.61	+0.8
4,261,980	+		HGI48_RS18975	0.61	-0.8
4,261,980	+		HGI48_RS18975	0.61	-2.7
4,261,980	+		HGI48_RS18975	0.61	-0.2
4,261,980	+		HGI48_RS18975	0.61	+0.2
4,261,980	+		HGI48_RS18975	0.61	+0.8
4,261,980	+		HGI48_RS18975	0.61	-2.4
4,261,981	-		HGI48_RS18975	0.61	-0.7
4,261,981	-		HGI48_RS18975	0.61	+0.7
4,262,006	+		HGI48_RS18975	0.65	+1.3
4,262,007	-		HGI48_RS18975	0.65	-1.1
4,262,007	-		HGI48_RS18975	0.65	+1.6
4,262,011	+		HGI48_RS18975	0.66	+0.5
4,262,011	+		HGI48_RS18975	0.66	-1.4
4,262,011	+				+2.9
4,262,011	+		HGI48_RS18975	0.66	-1.1
4,262,011	+		HGI48_RS18975	0.66	-0.2
4,262,011	+		HGI48_RS18975	0.66	-2.6
4,262,011	+		HGI48_RS18975	0.66	+0.0
4,262,011	+				-0.1
4,262,011	+		HGI48_RS18975	0.66	-0.2
4,262,012	-		HGI48_RS18975	0.66	+1.5
4,262,012	-		HGI48_RS18975	0.66	-1.4
4,262,012	-		HGI48_RS18975	0.66	-1.4
4,262,012	-		HGI48_RS18975	0.66	-0.4
4,262,012	-		HGI48_RS18975	0.66	-1.4
4,262,012	-				-0.1
4,262,012	-		HGI48_RS18975	0.66	-1.1
4,262,012	-		HGI48_RS18975	0.66	-1.3
4,262,012	-		HGI48_RS18975	0.66	+0.5
4,262,012	-		HGI48_RS18975	0.66	-1.9
4,262,012	-		HGI48_RS18975	0.66	-1.4
4,262,012	-				+2.2
4,262,013	+		HGI48_RS18975	0.66	+0.4
4,262,013	+		HGI48_RS18975	0.66	-0.2
4,262,013	+		HGI48_RS18975	0.66	-0.6
4,262,013	+		HGI48_RS18975	0.66	-0.1
4,262,013	+		HGI48_RS18975	0.66	+0.4
4,262,013	+		HGI48_RS18975	0.66	-1.7
4,262,013	+		HGI48_RS18975	0.66	-1.1
4,262,013	+		HGI48_RS18975	0.66	+0.3
4,262,014	-		HGI48_RS18975	0.66	+1.6
4,262,014	-				-0.7
4,262,014	-		HGI48_RS18975	0.66	-2.1
4,262,014	-		HGI48_RS18975	0.66	-1.4
4,262,014	-		HGI48_RS18975	0.66	-0.9
4,262,015	+		HGI48_RS18975	0.66	-0.2
4,262,015	+		HGI48_RS18975	0.66	+0.0
4,262,015	+		HGI48_RS18975	0.66	-0.9
4,262,015	+		HGI48_RS18975	0.66	-0.1
4,262,015	+		HGI48_RS18975	0.66	+0.5
4,262,015	+		HGI48_RS18975	0.66	-0.5
4,262,015	+		HGI48_RS18975	0.66	-1.9
4,262,016	-		HGI48_RS18975	0.66	+0.3
4,262,016	-				-0.7
4,262,016	-		HGI48_RS18975	0.66	+0.4
4,262,016	-		HGI48_RS18975	0.66	+0.8
4,262,016	-		HGI48_RS18975	0.66	-0.4
4,262,016	-		HGI48_RS18975	0.66	+0.5
4,262,043	+				+0.3
4,262,044	-		HGI48_RS18975	0.70	+1.8
4,262,064	+		HGI48_RS18975	0.73	+1.6
4,262,064	+		HGI48_RS18975	0.73	+1.0
4,262,064	+				-0.7
4,262,064	+		HGI48_RS18975	0.73	+3.9
4,262,084	-		HGI48_RS18975	0.76	-1.4
4,262,102	+				+0.9
4,262,102	+		HGI48_RS18975	0.78	+0.7
4,262,102	+		HGI48_RS18975	0.78	-0.5
4,262,102	+		HGI48_RS18975	0.78	+0.1
4,262,102	+		HGI48_RS18975	0.78	-2.1
4,262,102	+		HGI48_RS18975	0.78	-0.5
4,262,102	+		HGI48_RS18975	0.78	-1.2
4,262,103	-		HGI48_RS18975	0.78	-1.1
4,262,103	-		HGI48_RS18975	0.78	-1.2
4,262,103	-		HGI48_RS18975	0.78	+0.1
4,262,103	-		HGI48_RS18975	0.78	+0.3
4,262,157	+		HGI48_RS18975	0.86	+0.6
4,262,157	+		HGI48_RS18975	0.86	-0.3
4,262,257	-				-1.0
4,262,275	+				-1.4
4,262,275	+				+0.4
4,262,275	+				-1.2
4,262,276	-				-0.3
4,262,276	-				-2.4
4,262,276	-				-1.4
4,262,433	+		HGI48_RS18980	0.20	-0.2
4,262,433	+		HGI48_RS18980	0.20	-2.2
4,262,433	+				+0.3
4,262,485	+		HGI48_RS18980	0.26	+1.3
4,262,485	+		HGI48_RS18980	0.26	-0.2
4,262,485	+		HGI48_RS18980	0.26	+0.4
4,262,485	+		HGI48_RS18980	0.26	-1.5
4,262,485	+		HGI48_RS18980	0.26	-0.2
4,262,485	+		HGI48_RS18980	0.26	-0.4
4,262,486	-		HGI48_RS18980	0.26	-1.4
4,262,486	-		HGI48_RS18980	0.26	-0.1
4,262,486	-		HGI48_RS18980	0.26	-0.1
4,262,486	-		HGI48_RS18980	0.26	-0.1
4,262,486	-		HGI48_RS18980	0.26	-0.2
4,262,486	-		HGI48_RS18980	0.26	+0.3
4,262,486	-		HGI48_RS18980	0.26	+0.7
4,262,486	-		HGI48_RS18980	0.26	-0.1
4,262,486	-		HGI48_RS18980	0.26	+0.3
4,262,487	+		HGI48_RS18980	0.26	-0.8
4,262,487	+		HGI48_RS18980	0.26	+1.3
4,262,487	+		HGI48_RS18980	0.26	-0.4
4,262,487	+		HGI48_RS18980	0.26	+0.3
4,262,487	+				+0.9
4,262,551	+				-0.1
4,262,556	-		HGI48_RS18980	0.33	-2.2
4,262,556	-		HGI48_RS18980	0.33	-0.7
4,262,556	-		HGI48_RS18980	0.33	+0.5
4,262,556	-		HGI48_RS18980	0.33	+0.8
4,262,596	+		HGI48_RS18980	0.38	+1.9
4,262,596	+		HGI48_RS18980	0.38	+0.3
4,262,596	+		HGI48_RS18980	0.38	-1.9
4,262,596	+		HGI48_RS18980	0.38	+0.5
4,262,596	+		HGI48_RS18980	0.38	+0.7
4,262,597	-		HGI48_RS18980	0.38	+0.9
4,262,597	-		HGI48_RS18980	0.38	-0.9
4,262,599	+		HGI48_RS18980	0.38	-0.2
4,262,599	+		HGI48_RS18980	0.38	-0.5
4,262,599	+		HGI48_RS18980	0.38	+1.6
4,262,600	-		HGI48_RS18980	0.38	+1.4
4,262,605	+		HGI48_RS18980	0.39	+0.2
4,262,613	+		HGI48_RS18980	0.40	-1.1
4,262,667	-		HGI48_RS18980	0.45	-1.0
4,262,667	-		HGI48_RS18980	0.45	+0.1
4,262,702	-		HGI48_RS18980	0.49	+0.9
4,262,719	+		HGI48_RS18980	0.51	-1.1
4,262,772	+		HGI48_RS18980	0.57	-1.1
4,262,772	+		HGI48_RS18980	0.57	+0.9
4,262,772	+		HGI48_RS18980	0.57	+0.9
4,262,772	+		HGI48_RS18980	0.57	+0.2
4,262,772	+		HGI48_RS18980	0.57	+0.2
4,262,772	+		HGI48_RS18980	0.57	-1.7
4,262,772	+		HGI48_RS18980	0.57	-1.1
4,262,772	+		HGI48_RS18980	0.57	-0.7
4,262,772	+		HGI48_RS18980	0.57	-2.4
4,262,772	+		HGI48_RS18980	0.57	+1.4
4,262,772	+		HGI48_RS18980	0.57	+0.3
4,262,772	+		HGI48_RS18980	0.57	+0.2
4,262,773	-		HGI48_RS18980	0.57	+0.3
4,262,773	-		HGI48_RS18980	0.57	-1.1
4,262,773	-		HGI48_RS18980	0.57	-1.1
4,262,773	-		HGI48_RS18980	0.57	-1.7
4,262,773	-		HGI48_RS18980	0.57	-0.5
4,262,773	-		HGI48_RS18980	0.57	+0.8
4,262,773	-		HGI48_RS18980	0.57	+0.8
4,262,815	-		HGI48_RS18980	0.61	+0.9
4,262,815	-		HGI48_RS18980	0.61	-0.7
4,262,910	+		HGI48_RS18980	0.72	-0.2
4,262,910	+		HGI48_RS18980	0.72	+1.7
4,262,942	+		HGI48_RS18980	0.75	+0.8
4,262,957	-		HGI48_RS18980	0.77	-1.1
4,262,992	+		HGI48_RS18980	0.81	+1.4
4,262,993	-		HGI48_RS18980	0.81	+1.3
4,262,993	-				+2.2
4,262,993	-		HGI48_RS18980	0.81	-1.2
4,262,993	-		HGI48_RS18980	0.81	-0.7
4,263,075	+		HGI48_RS18980	0.90	-0.7
4,263,075	+		HGI48_RS18980	0.90	+0.8
4,263,075	+		HGI48_RS18980	0.90	-0.6
4,263,076	-		HGI48_RS18980	0.90	-1.4
4,263,076	-		HGI48_RS18980	0.90	-0.1
4,263,107	+				+0.4
4,263,108	-				+0.5
4,263,114	-				-0.3
4,263,126	+				-0.7
4,263,127	-				-0.1
4,263,127	-				+1.8
4,263,147	+				+0.9
4,263,148	-				-0.7
4,263,148	-				-0.1
4,263,163	+				-2.1
4,263,164	-				-0.1
4,263,170	+				-1.1
4,263,170	+				-1.2
4,263,171	-				+0.5
4,263,171	-				+0.1
4,263,229	-				+1.3
4,263,355	-		HGI48_RS18985	0.28	-0.2
4,263,379	+		HGI48_RS18985	0.31	+0.3
4,263,380	-		HGI48_RS18985	0.31	+0.3
4,263,397	+		HGI48_RS18985	0.34	+0.3
4,263,397	+		HGI48_RS18985	0.34	+0.5
4,263,397	+		HGI48_RS18985	0.34	-0.4
4,263,400	-		HGI48_RS18985	0.34	+0.6
4,263,427	+		HGI48_RS18985	0.38	-0.3
4,263,633	-		HGI48_RS18985	0.69	+1.6
4,263,679	-		HGI48_RS18985	0.76	-0.7
4,263,809	+				-1.4
4,263,809	+				+2.4
4,263,809	+				-0.4
4,263,810	-				-0.1
4,263,813	+				-0.0
4,263,813	+				+0.5
4,263,813	+				-1.0
4,263,814	-				-0.1
4,263,878	+				+0.9
4,263,878	+				-0.8
4,263,878	+				-0.1
4,263,878	+				-0.0
4,263,879	-				+1.1
4,263,879	-				-0.7
4,263,879	-				-0.3
4,263,879	-				+1.2
4,263,879	-				+0.6
4,263,889	+				-1.2
4,263,960	+		HGI48_RS18990	0.11	-0.1
4,263,960	+		HGI48_RS18990	0.11	-0.1
4,263,960	+		HGI48_RS18990	0.11	-1.1
4,263,960	+		HGI48_RS18990	0.11	+0.2
4,263,961	-				-0.1
4,263,961	-		HGI48_RS18990	0.11	-0.9
4,263,961	-		HGI48_RS18990	0.11	-0.4
4,263,961	-		HGI48_RS18990	0.11	-0.9
4,263,961	-		HGI48_RS18990	0.11	+0.1
4,263,961	-		HGI48_RS18990	0.11	+0.3
4,263,961	-		HGI48_RS18990	0.11	-1.9
4,263,961	-		HGI48_RS18990	0.11	-0.4
4,263,964	+				-0.7
4,263,964	+		HGI48_RS18990	0.11	-1.4
4,263,965	-		HGI48_RS18990	0.11	+0.3
4,263,965	-		HGI48_RS18990	0.11	-0.7
4,263,965	-		HGI48_RS18990	0.11	-0.4
4,263,976	+		HGI48_RS18990	0.13	+0.9
4,263,977	-		HGI48_RS18990	0.13	-1.7
4,264,019	-		HGI48_RS18990	0.17	-1.7
4,264,072	+				-0.7