Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,170,832	+				-0.2
4,170,865	-				+1.7
4,170,873	+				+0.1
4,170,873	+				+0.2
4,170,874	-				-1.7
4,170,935	+		HGI48_RS18580	0.72	-0.7
4,170,968	+				-1.9
4,170,968	+				+0.3
4,170,968	+				-0.8
4,170,969	-				+0.2
4,170,972	+				-0.7
4,171,016	+				-0.6
4,171,054	+				-1.9
4,171,095	-				+0.7
4,171,095	-				+0.2
4,171,095	-				-0.9
4,171,162	+				-1.4
4,171,162	+				-0.5
4,171,256	-				+0.7
4,171,256	-				+0.9
4,171,277	-				+0.9
4,171,292	+				+0.2
4,171,293	-				+0.9
4,171,391	+				-0.5
4,171,396	+				+0.5
4,171,397	-				-0.2
4,171,405	-				+0.7
4,171,405	-				-1.4
4,171,411	+				-1.4
4,171,425	+				+0.0
4,171,432	+				+0.3
4,171,433	-				-1.4
4,171,433	-				-0.1
4,171,436	+				-0.1
4,171,436	+				-0.0
4,171,437	-				+1.2
4,171,437	-				+1.5
4,171,445	+				+0.6
4,171,446	-				-0.4
4,171,446	-				-0.5
4,171,472	-				-0.8
4,171,475	+				+0.2
4,171,476	-				-1.4
4,171,476	-				-0.8
4,171,538	+				-1.1
4,171,539	-				-1.4
4,171,541	+				-1.4
4,171,541	+				-0.7
4,171,541	+				-1.1
4,171,542	-				-2.4
4,171,542	-				+0.9
4,171,594	+				-1.4
4,171,597	+				-2.1
4,171,598	-				+0.1
4,171,598	-				-0.7
4,171,598	-				+1.1
4,171,607	+				-0.7
4,171,815	+		HGI48_RS18585	0.15	-1.0
4,171,833	+		HGI48_RS18585	0.16	-0.1
4,171,833	+		HGI48_RS18585	0.16	+0.2
4,171,833	+		HGI48_RS18585	0.16	-0.7
4,171,834	-		HGI48_RS18585	0.17	-0.7
4,171,834	-		HGI48_RS18585	0.17	-0.8
4,171,900	-		HGI48_RS18585	0.21	+0.3
4,172,062	+		HGI48_RS18585	0.33	+0.6
4,172,063	-		HGI48_RS18585	0.33	-1.8
4,172,063	-		HGI48_RS18585	0.33	-0.1
4,172,064	+		HGI48_RS18585	0.33	-1.3
4,172,064	+				+0.3
4,172,065	-		HGI48_RS18585	0.33	-0.6
4,172,065	-		HGI48_RS18585	0.33	-1.9
4,172,117	+		HGI48_RS18585	0.37	-2.1
4,172,117	+		HGI48_RS18585	0.37	+1.1
4,172,118	-		HGI48_RS18585	0.37	+1.5
4,172,158	+		HGI48_RS18585	0.40	-0.0
4,172,180	-				+2.9
4,172,180	-		HGI48_RS18585	0.41	-2.3
4,172,193	+		HGI48_RS18585	0.42	-1.4
4,172,194	-		HGI48_RS18585	0.42	-1.9
4,172,194	-		HGI48_RS18585	0.42	+1.2
4,172,222	+		HGI48_RS18585	0.44	-1.1
4,172,270	+		HGI48_RS18585	0.48	-1.4
4,172,270	+		HGI48_RS18585	0.48	-1.1
4,172,270	+		HGI48_RS18585	0.48	-0.7
4,172,270	+		HGI48_RS18585	0.48	-1.7
4,172,270	+		HGI48_RS18585	0.48	-1.9
4,172,271	-		HGI48_RS18585	0.48	+0.8
4,172,271	-				+1.3
4,172,271	-		HGI48_RS18585	0.48	-0.7
4,172,271	-		HGI48_RS18585	0.48	-1.0
4,172,271	-		HGI48_RS18585	0.48	-2.7
4,172,271	-		HGI48_RS18585	0.48	-0.1
4,172,274	+		HGI48_RS18585	0.48	-0.1
4,172,274	+				+1.9
4,172,275	-		HGI48_RS18585	0.48	-1.3
4,172,275	-		HGI48_RS18585	0.48	-1.0
4,172,275	-		HGI48_RS18585	0.48	-1.7
4,172,275	-		HGI48_RS18585	0.48	-0.5
4,172,275	-		HGI48_RS18585	0.48	-0.1
4,172,275	-		HGI48_RS18585	0.48	-0.4
4,172,304	+				-0.1
4,172,304	+				+3.2
4,172,305	-		HGI48_RS18585	0.50	-1.4
4,172,308	-		HGI48_RS18585	0.50	+0.6
4,172,308	-		HGI48_RS18585	0.50	-1.9
4,172,308	-				-0.1
4,172,329	-				+0.3
4,172,329	-		HGI48_RS18585	0.52	-0.1
4,172,329	-		HGI48_RS18585	0.52	-1.4
4,172,356	+		HGI48_RS18585	0.54	+1.1
4,172,356	+		HGI48_RS18585	0.54	-1.1
4,172,455	-		HGI48_RS18585	0.61	-1.4
4,172,515	+				-0.1
4,172,515	+				+0.9
4,172,515	+		HGI48_RS18585	0.65	-0.7
4,172,516	-				+0.9
4,172,516	-		HGI48_RS18585	0.65	-0.4
4,172,516	-		HGI48_RS18585	0.65	-0.3
4,172,568	-				-0.1
4,172,568	-		HGI48_RS18585	0.69	-2.0
4,172,568	-		HGI48_RS18585	0.69	-1.2
4,172,624	+		HGI48_RS18585	0.73	-1.1
4,172,624	+		HGI48_RS18585	0.73	-1.1
4,172,624	+		HGI48_RS18585	0.73	-2.3
4,172,624	+		HGI48_RS18585	0.73	-1.1
4,172,625	-				+0.3
4,172,625	-				+3.2
4,172,625	-				+0.9
4,172,690	-		HGI48_RS18585	0.78	-0.7
4,172,690	-		HGI48_RS18585	0.78	-0.9
4,172,720	+				+1.3
4,172,720	+		HGI48_RS18585	0.80	-1.4
4,172,721	-				-0.7
4,172,721	-		HGI48_RS18585	0.80	+0.2
4,172,721	-				-0.1
4,172,721	-		HGI48_RS18585	0.80	-1.7
4,172,736	+		HGI48_RS18585	0.81	-2.3
4,172,736	+		HGI48_RS18585	0.81	+0.6
4,172,736	+		HGI48_RS18585	0.81	-1.7
4,172,737	-		HGI48_RS18585	0.81	+0.1
4,172,737	-		HGI48_RS18585	0.81	-1.7
4,172,737	-		HGI48_RS18585	0.81	+1.0
4,172,737	-		HGI48_RS18585	0.81	-0.1
4,172,757	-		HGI48_RS18585	0.83	-0.3
4,172,841	+		HGI48_RS18585	0.89	-1.6
4,172,861	+				-0.1
4,172,861	+				-1.7
4,172,861	+				-0.9
4,172,861	+				-1.1
4,172,862	-				+1.2
4,172,862	-				-0.3
4,172,886	+				-1.4
4,172,907	+				+1.4
4,172,907	+				-1.4
4,172,907	+				-0.4
4,172,908	-				-1.1
4,172,908	-				-0.5
4,172,908	-				-1.2
4,172,908	-				-0.1
4,172,908	-				-0.4
4,172,966	-				-1.1
4,173,024	+				+0.1
4,173,024	+				-0.6
4,173,024	+				+0.5
4,173,024	+				-0.1
4,173,024	+				+1.3
4,173,024	+				+1.7
4,173,024	+				+1.1
4,173,024	+				-0.3
4,173,024	+				-1.4
4,173,024	+				-3.2
4,173,024	+				+1.4
4,173,024	+				-0.1
4,173,024	+				+0.1
4,173,024	+				+0.1
4,173,024	+				+1.5
4,173,024	+				+1.6
4,173,024	+				-1.2
4,173,025	-				-0.1
4,173,025	-				-0.7
4,173,025	-				+0.3
4,173,025	-				+0.7
4,173,025	-				-0.4
4,173,025	-				-0.7
4,173,025	-				-1.1
4,173,025	-				+0.3
4,173,052	+				-0.1
4,173,053	-				-0.9
4,173,053	-				-0.1
4,173,053	-				-0.4
4,173,071	+				-0.5
4,173,101	-				-0.9
4,173,119	-				+0.0
4,173,146	+				-1.3
4,173,153	-				-0.3
4,173,239	+		HGI48_RS18590	0.16	+1.3
4,173,239	+		HGI48_RS18590	0.16	-0.5
4,173,240	-		HGI48_RS18590	0.16	-1.1
4,173,240	-		HGI48_RS18590	0.16	-2.3
4,173,240	-		HGI48_RS18590	0.16	-0.7
4,173,240	-		HGI48_RS18590	0.16	-2.9
4,173,240	-				+0.9
4,173,240	-		HGI48_RS18590	0.16	-1.4
4,173,245	+		HGI48_RS18590	0.16	-1.7
4,173,245	+		HGI48_RS18590	0.16	-0.6
4,173,245	+		HGI48_RS18590	0.16	-1.6
4,173,245	+		HGI48_RS18590	0.16	-0.8
4,173,245	+		HGI48_RS18590	0.16	-0.1
4,173,245	+		HGI48_RS18590	0.16	-0.5
4,173,245	+		HGI48_RS18590	0.16	+0.6
4,173,245	+				-0.1
4,173,246	-		HGI48_RS18590	0.16	+1.8
4,173,246	-		HGI48_RS18590	0.16	-0.5
4,173,246	-		HGI48_RS18590	0.16	+0.3
4,173,246	-		HGI48_RS18590	0.16	-1.9
4,173,246	-		HGI48_RS18590	0.16	-0.3
4,173,246	-		HGI48_RS18590	0.16	-0.1
4,173,265	+		HGI48_RS18590	0.17	-1.4
4,173,265	+		HGI48_RS18590	0.17	-2.3
4,173,266	-		HGI48_RS18590	0.18	-2.3
4,173,266	-		HGI48_RS18590	0.18	+0.9
4,173,266	-		HGI48_RS18590	0.18	-0.1
4,173,266	-		HGI48_RS18590	0.18	+0.9
4,173,266	-		HGI48_RS18590	0.18	-2.0
4,173,266	-		HGI48_RS18590	0.18	-3.1
4,173,309	+		HGI48_RS18590	0.21	-0.5
4,173,400	-		HGI48_RS18590	0.27	-0.9
4,173,423	+		HGI48_RS18590	0.29	-0.8
4,173,423	+		HGI48_RS18590	0.29	-1.9
4,173,423	+		HGI48_RS18590	0.29	-0.1
4,173,424	-		HGI48_RS18590	0.29	-0.6
4,173,461	-		HGI48_RS18590	0.32	+0.9
4,173,476	+		HGI48_RS18590	0.33	-2.7
4,173,476	+		HGI48_RS18590	0.33	-0.8
4,173,476	+		HGI48_RS18590	0.33	-0.3
4,173,476	+		HGI48_RS18590	0.33	+0.6
4,173,477	-		HGI48_RS18590	0.33	-0.1
4,173,477	-				-0.7
4,173,477	-		HGI48_RS18590	0.33	-2.1
4,173,477	-		HGI48_RS18590	0.33	-0.1
4,173,477	-		HGI48_RS18590	0.33	-0.8
4,173,487	+		HGI48_RS18590	0.34	+1.9
4,173,487	+		HGI48_RS18590	0.34	+0.1
4,173,487	+		HGI48_RS18590	0.34	+0.3
4,173,500	+		HGI48_RS18590	0.35	-0.1
4,173,501	-		HGI48_RS18590	0.35	+1.1
4,173,501	-		HGI48_RS18590	0.35	+0.3
4,173,508	+		HGI48_RS18590	0.35	-3.1
4,173,508	+		HGI48_RS18590	0.35	+0.7
4,173,508	+		HGI48_RS18590	0.35	-0.4
4,173,508	+		HGI48_RS18590	0.35	-1.7
4,173,508	+		HGI48_RS18590	0.35	-1.1
4,173,508	+		HGI48_RS18590	0.35	-1.1
4,173,509	-		HGI48_RS18590	0.35	-0.7
4,173,509	-		HGI48_RS18590	0.35	-1.4
4,173,509	-		HGI48_RS18590	0.35	-1.5
4,173,509	-		HGI48_RS18590	0.35	-0.3
4,173,509	-		HGI48_RS18590	0.35	-1.9
4,173,509	-		HGI48_RS18590	0.35	-0.3
4,173,509	-		HGI48_RS18590	0.35	-0.4
4,173,641	+		HGI48_RS18590	0.45	-1.5
4,173,641	+		HGI48_RS18590	0.45	-2.1
4,173,642	-		HGI48_RS18590	0.45	-0.2
4,173,642	-		HGI48_RS18590	0.45	+1.2
4,173,642	-		HGI48_RS18590	0.45	-1.4
4,173,642	-		HGI48_RS18590	0.45	+0.4
4,173,642	-		HGI48_RS18590	0.45	-0.7
4,173,711	+		HGI48_RS18590	0.50	-0.3
4,173,711	+		HGI48_RS18590	0.50	-0.4
4,173,711	+				-0.1
4,173,712	-				-0.7
4,173,712	-		HGI48_RS18590	0.50	-1.2
4,173,712	-		HGI48_RS18590	0.50	-0.7
4,173,729	+		HGI48_RS18590	0.51	-1.4
4,173,729	+		HGI48_RS18590	0.51	-0.7
4,173,729	+		HGI48_RS18590	0.51	-0.6
4,173,729	+		HGI48_RS18590	0.51	-2.4
4,173,729	+		HGI48_RS18590	0.51	-0.3
4,173,730	-		HGI48_RS18590	0.51	-1.4
4,173,730	-		HGI48_RS18590	0.51	-1.4
4,173,730	-		HGI48_RS18590	0.51	-1.9
4,173,730	-				+0.9
4,173,730	-		HGI48_RS18590	0.51	-0.1
4,173,730	-		HGI48_RS18590	0.51	-0.1
4,173,735	+		HGI48_RS18590	0.52	+0.0
4,173,736	-		HGI48_RS18590	0.52	-1.7
4,173,736	-		HGI48_RS18590	0.52	-1.4
4,173,736	-		HGI48_RS18590	0.52	+0.3
4,173,744	+		HGI48_RS18590	0.52	-1.1
4,173,745	-		HGI48_RS18590	0.52	-1.4
4,173,788	-		HGI48_RS18590	0.56	-1.7
4,173,793	-		HGI48_RS18590	0.56	+0.1
4,173,793	-		HGI48_RS18590	0.56	-2.7
4,173,817	+				+0.9
4,173,820	+		HGI48_RS18590	0.58	-0.1
4,173,820	+		HGI48_RS18590	0.58	-2.1
4,173,820	+				-0.7
4,173,820	+		HGI48_RS18590	0.58	+1.1
4,173,820	+		HGI48_RS18590	0.58	+0.1
4,173,820	+		HGI48_RS18590	0.58	-2.4
4,173,820	+		HGI48_RS18590	0.58	-2.2
4,173,821	-		HGI48_RS18590	0.58	+0.4
4,173,821	-		HGI48_RS18590	0.58	-0.5
4,173,821	-		HGI48_RS18590	0.58	-2.3
4,173,903	+		HGI48_RS18590	0.64	+0.9
4,173,904	-				+3.4
4,173,912	+		HGI48_RS18590	0.65	+0.3
4,174,000	+		HGI48_RS18590	0.71	-0.3