Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17555

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,927,756	+		HGI48_RS17550	0.67	-0.5
3,927,764	+		HGI48_RS17550	0.67	-1.5
3,927,768	-		HGI48_RS17550	0.67	+0.4
3,927,768	-		HGI48_RS17550	0.67	+1.6
3,927,777	-		HGI48_RS17550	0.68	+0.6
3,927,778	+				+0.8
3,927,883	+		HGI48_RS17550	0.76	-0.2
3,927,883	+		HGI48_RS17550	0.76	-2.0
3,927,883	+		HGI48_RS17550	0.76	-1.7
3,927,883	+		HGI48_RS17550	0.76	-1.1
3,927,883	+		HGI48_RS17550	0.76	+1.2
3,927,884	-		HGI48_RS17550	0.76	-1.5
3,927,884	-		HGI48_RS17550	0.76	-0.2
3,927,884	-		HGI48_RS17550	0.76	-0.7
3,927,884	-		HGI48_RS17550	0.76	+0.2
3,927,884	-				+0.3
3,928,044	-		HGI48_RS17550	0.87	-2.2
3,928,071	+		HGI48_RS17550	0.89	+0.2
3,928,141	-				+1.6
3,928,141	-				-0.7
3,928,141	-				-1.5
3,928,141	-				-1.0
3,928,141	-				+1.3
3,928,165	+				+2.7
3,928,166	-				-2.0
3,928,166	-				-0.5
3,928,168	+				+0.6
3,928,168	+				-0.7
3,928,168	+				-0.7
3,928,168	+				-0.7
3,928,168	+				+0.4
3,928,168	+				+0.8
3,928,169	-				-0.0
3,928,169	-				+0.6
3,928,226	+				-1.3
3,928,226	+				-0.7
3,928,227	-				-0.7
3,928,251	-				+4.3
3,928,482	+				+1.1
3,928,536	+				+0.4
3,928,536	+				+1.8
3,928,536	+				+0.8
3,928,536	+				-0.7
3,928,536	+				-0.2
3,928,537	-				+0.3
3,928,539	+				-0.3
3,928,539	+				+0.8
3,928,626	+				-1.2
3,928,631	-				-1.0
3,928,639	+				-2.5
3,928,639	+				-0.2
3,928,639	+				-1.7
3,928,640	-				-1.2
3,928,640	-				+0.3
3,928,640	-				+0.4
3,928,640	-				-2.3
3,928,643	+				-0.3
3,928,643	+				+0.4
3,928,643	+				-0.7
3,928,644	-				-0.2
3,928,644	-				-0.7
3,928,652	+				+1.2
3,928,652	+				+0.3
3,928,652	+				+0.6
3,928,652	+				-0.5
3,928,652	+				+0.0
3,928,652	+				+0.3
3,928,653	-				+0.6
3,928,653	-				+0.8
3,928,653	-				-2.5
3,928,653	-				-0.2
3,928,653	-				-1.2
3,928,653	-				-0.6
3,928,656	+				+1.2
3,928,656	+				+1.1
3,928,656	+				-2.3
3,928,656	+				-1.5
3,928,851	+				+0.8
3,928,852	-		HGI48_RS17555	0.20	+0.5
3,928,852	-		HGI48_RS17555	0.20	-1.2
3,928,878	+		HGI48_RS17555	0.22	+0.3
3,928,878	+		HGI48_RS17555	0.22	-0.2
3,928,879	-		HGI48_RS17555	0.22	-0.5
3,928,879	-		HGI48_RS17555	0.22	-0.6
3,928,879	-		HGI48_RS17555	0.22	-0.0
3,928,879	-		HGI48_RS17555	0.22	+0.2
3,928,978	+		HGI48_RS17555	0.32	-0.2
3,928,978	+		HGI48_RS17555	0.32	-0.2
3,928,978	+		HGI48_RS17555	0.32	-0.5
3,928,979	-		HGI48_RS17555	0.32	+1.3
3,928,979	-		HGI48_RS17555	0.32	-0.0
3,928,997	-				+0.8
3,928,997	-		HGI48_RS17555	0.34	-0.5
3,929,016	+		HGI48_RS17555	0.36	-1.2
3,929,016	+		HGI48_RS17555	0.36	-0.3
3,929,016	+		HGI48_RS17555	0.36	+1.1
3,929,017	-		HGI48_RS17555	0.36	-1.0
3,929,017	-		HGI48_RS17555	0.36	-0.7
3,929,027	+		HGI48_RS17555	0.37	-0.4
3,929,086	+		HGI48_RS17555	0.43	+0.4
3,929,087	-		HGI48_RS17555	0.43	-0.2
3,929,250	+		HGI48_RS17555	0.59	-1.5
3,929,250	+		HGI48_RS17555	0.59	-1.0
3,929,250	+		HGI48_RS17555	0.59	-1.2
3,929,250	+		HGI48_RS17555	0.59	+0.1
3,929,250	+		HGI48_RS17555	0.59	-0.6
3,929,251	-		HGI48_RS17555	0.59	+1.0
3,929,268	+				-0.7
3,929,268	+		HGI48_RS17555	0.61	-0.2
3,929,269	-		HGI48_RS17555	0.61	+1.1
3,929,269	-		HGI48_RS17555	0.61	+0.4
3,929,269	-		HGI48_RS17555	0.61	+1.4
3,929,269	-		HGI48_RS17555	0.61	-1.7
3,929,271	+				-0.7
3,929,271	+		HGI48_RS17555	0.61	-0.2
3,929,271	+		HGI48_RS17555	0.61	+1.5
3,929,271	+		HGI48_RS17555	0.61	+1.2
3,929,272	-		HGI48_RS17555	0.62	+1.0
3,929,272	-		HGI48_RS17555	0.62	-1.2
3,929,359	+		HGI48_RS17555	0.70	+0.9
3,929,397	+		HGI48_RS17555	0.74	-0.2
3,929,398	-		HGI48_RS17555	0.74	-1.2
3,929,398	-		HGI48_RS17555	0.74	-0.2
3,929,429	+		HGI48_RS17555	0.77	+0.1
3,929,429	+		HGI48_RS17555	0.77	-0.4
3,929,429	+		HGI48_RS17555	0.77	+0.2
3,929,429	+		HGI48_RS17555	0.77	-2.6
3,929,430	-		HGI48_RS17555	0.77	+1.1
3,929,430	-		HGI48_RS17555	0.77	+0.5
3,929,430	-				+1.6
3,929,430	-		HGI48_RS17555	0.77	-2.2
3,929,502	+		HGI48_RS17555	0.85	-1.5
3,929,520	+		HGI48_RS17555	0.86	+0.8
3,929,520	+		HGI48_RS17555	0.86	-1.5
3,929,520	+		HGI48_RS17555	0.86	+0.2
3,929,520	+		HGI48_RS17555	0.86	+0.8
3,929,521	-		HGI48_RS17555	0.86	-0.2
3,929,521	-		HGI48_RS17555	0.86	-0.5
3,929,595	+				-0.7
3,929,596	-				+0.6
3,929,604	+				-1.2
3,929,604	+				+0.8
3,929,605	-				-1.7
3,929,605	-				+0.0
3,929,605	-				+1.3
3,929,644	+				+0.8
3,929,644	+				+1.2
3,929,644	+				+0.8
3,929,644	+				+0.8
3,929,645	-				-1.2
3,929,645	-				+0.8
3,929,645	-				-0.3
3,929,673	+				+0.8
3,929,673	+				+0.2
3,929,674	-				+0.3
3,929,674	-				-1.2
3,929,705	+				+0.2
3,929,705	+				+0.3
3,929,705	+				-0.4
3,929,705	+				-0.2
3,929,706	-				+1.2
3,929,706	-				-2.5
3,929,706	-				-0.2
3,929,706	-				-1.2
3,929,706	-				-0.0
3,929,706	-				+0.4
3,929,706	-				+0.5
3,929,706	-				-1.2
3,929,706	-				+0.2
3,929,710	+				-1.5
3,929,711	-				-2.3
3,929,711	-				-1.0
3,929,711	-				-0.3
3,929,718	+				-1.2
3,929,718	+				+0.5
3,929,718	+				-0.0
3,929,722	+				+1.4
3,929,722	+				+0.2
3,929,722	+				-1.0
3,929,722	+				-1.0
3,929,723	-				-1.0
3,929,729	+				-0.4
3,929,729	+				-0.7
3,929,729	+				-0.0
3,929,729	+				+0.4
3,929,729	+				-1.5
3,929,729	+				-2.0
3,929,729	+				-1.4
3,929,729	+				-2.0
3,929,729	+				-0.7
3,929,730	-				-1.4
3,929,730	-				+3.2
3,929,730	-				-1.2
3,929,730	-				-0.2
3,929,730	-				+0.9
3,929,730	-				+1.6
3,929,730	-				-1.2
3,929,730	-				-2.5
3,929,752	+				-0.1
3,929,752	+				-1.3