Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17550

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,925,862	+				-1.2
3,925,882	+				+1.3
3,925,883	-				-0.7
3,926,049	+				+1.0
3,926,049	+				-0.2
3,926,049	+				+0.2
3,926,050	-				+0.5
3,926,052	+				-0.2
3,926,053	-				+1.2
3,926,063	+				-1.6
3,926,063	+				+1.4
3,926,063	+				-1.3
3,926,063	+				-0.7
3,926,064	-				+1.0
3,926,067	+				-2.0
3,926,067	+				+0.8
3,926,090	-				-1.7
3,926,090	-				+0.8
3,926,128	+				-2.0
3,926,129	-				-1.7
3,926,129	-				+0.4
3,926,129	-				+0.8
3,926,129	-				+1.4
3,926,154	+				-0.1
3,926,166	+		HGI48_RS17545	0.12	-1.0
3,926,166	+		HGI48_RS17545	0.12	-0.2
3,926,166	+		HGI48_RS17545	0.12	+0.5
3,926,356	+		HGI48_RS17545	0.80	-0.7
3,926,362	+		HGI48_RS17545	0.83	-0.4
3,926,363	-		HGI48_RS17545	0.83	-0.1
3,926,363	-		HGI48_RS17545	0.83	+0.6
3,926,374	+		HGI48_RS17545	0.87	+0.8
3,926,375	-				-0.7
3,926,376	+		HGI48_RS17545	0.88	-1.4
3,926,407	+				-0.7
3,926,492	+				-2.5
3,926,503	+				-0.6
3,926,515	+				+0.0
3,926,515	+				-0.7
3,926,516	-				+0.6
3,926,592	+				+0.0
3,926,592	+				-0.5
3,926,593	-				+2.6
3,926,593	-				-2.0
3,926,609	+				-1.5
3,926,634	+				-0.2
3,926,634	+				+1.8
3,926,634	+				-1.0
3,926,635	-				-0.6
3,926,635	-				-2.3
3,926,639	+				-0.2
3,926,640	-				-1.5
3,926,643	+				+0.8
3,926,643	+				-1.2
3,926,643	+				-0.3
3,926,643	+				-0.9
3,926,643	+				-1.7
3,926,643	+				+0.2
3,926,644	-				+1.6
3,926,644	-				+0.4
3,926,644	-				+2.3
3,926,644	-				+0.8
3,926,644	-				-0.9
3,926,644	-				+0.3
3,926,644	-				-0.2
3,926,644	-				-0.7
3,926,658	+				-0.5
3,926,659	-				+2.8
3,926,687	-				+2.1
3,926,711	-				-0.2
3,926,713	+				-2.3
3,926,713	+				-1.2
3,926,713	+				+0.1
3,926,714	-				-0.1
3,926,790	+				+0.8
3,926,790	+				+0.8
3,926,790	+				+0.3
3,926,790	+				-0.4
3,926,790	+				-1.2
3,926,790	+				-2.0
3,926,791	-				-0.5
3,926,791	-				-0.2
3,926,791	-				-0.4
3,926,791	-				+0.6
3,926,808	+				-0.5
3,926,808	+				+0.3
3,926,808	+				-2.2
3,926,808	+				-0.4
3,926,809	-				-0.5
3,926,858	+				+2.1
3,926,872	+				-0.2
3,926,872	+				-1.0
3,926,873	-				-1.7
3,926,873	-				-1.2
3,926,873	-				-0.7
3,927,167	+				-0.2
3,927,168	-		HGI48_RS17550	0.25	-0.2
3,927,194	+		HGI48_RS17550	0.27	+1.6
3,927,195	-		HGI48_RS17550	0.27	-0.6
3,927,208	+		HGI48_RS17550	0.28	+0.2
3,927,209	-				-0.7
3,927,209	-		HGI48_RS17550	0.28	+0.3
3,927,247	+		HGI48_RS17550	0.30	+1.1
3,927,247	+				-0.7
3,927,247	+		HGI48_RS17550	0.30	-0.5
3,927,247	+		HGI48_RS17550	0.30	+0.5
3,927,247	+		HGI48_RS17550	0.30	+1.1
3,927,247	+		HGI48_RS17550	0.30	-0.3
3,927,247	+		HGI48_RS17550	0.30	-0.2
3,927,248	-		HGI48_RS17550	0.30	+0.3
3,927,248	-		HGI48_RS17550	0.30	-1.0
3,927,248	-		HGI48_RS17550	0.30	-0.2
3,927,248	-		HGI48_RS17550	0.30	-0.3
3,927,248	-				-0.7
3,927,272	+		HGI48_RS17550	0.32	+0.1
3,927,392	+		HGI48_RS17550	0.41	-1.7
3,927,404	+		HGI48_RS17550	0.42	-1.7
3,927,404	+		HGI48_RS17550	0.42	-2.7
3,927,404	+		HGI48_RS17550	0.42	+0.6
3,927,404	+		HGI48_RS17550	0.42	+0.8
3,927,405	-		HGI48_RS17550	0.42	+2.1
3,927,405	-		HGI48_RS17550	0.42	+0.5
3,927,405	-		HGI48_RS17550	0.42	-1.2
3,927,405	-		HGI48_RS17550	0.42	+1.3
3,927,405	-		HGI48_RS17550	0.42	+1.4
3,927,423	+		HGI48_RS17550	0.43	-0.2
3,927,503	+		HGI48_RS17550	0.49	+1.0
3,927,504	-		HGI48_RS17550	0.49	+1.8
3,927,563	+				+1.3
3,927,563	+		HGI48_RS17550	0.53	-0.2
3,927,564	-		HGI48_RS17550	0.53	-2.0
3,927,564	-		HGI48_RS17550	0.53	-0.0
3,927,564	-		HGI48_RS17550	0.53	+0.3
3,927,564	-		HGI48_RS17550	0.53	-0.0
3,927,615	-		HGI48_RS17550	0.57	-0.9
3,927,632	+		HGI48_RS17550	0.58	+1.8
3,927,632	+		HGI48_RS17550	0.58	-2.9
3,927,756	+		HGI48_RS17550	0.67	-0.5
3,927,764	+		HGI48_RS17550	0.67	-1.5
3,927,768	-		HGI48_RS17550	0.67	+0.4
3,927,768	-		HGI48_RS17550	0.67	+1.6
3,927,777	-		HGI48_RS17550	0.68	+0.6
3,927,778	+				+0.8
3,927,883	+		HGI48_RS17550	0.76	-0.2
3,927,883	+		HGI48_RS17550	0.76	-2.0
3,927,883	+		HGI48_RS17550	0.76	-1.7
3,927,883	+		HGI48_RS17550	0.76	-1.1
3,927,883	+		HGI48_RS17550	0.76	+1.2
3,927,884	-		HGI48_RS17550	0.76	-1.5
3,927,884	-		HGI48_RS17550	0.76	-0.2
3,927,884	-		HGI48_RS17550	0.76	-0.7
3,927,884	-		HGI48_RS17550	0.76	+0.2
3,927,884	-				+0.3
3,928,044	-		HGI48_RS17550	0.87	-2.2
3,928,071	+		HGI48_RS17550	0.89	+0.2
3,928,141	-				+1.6
3,928,141	-				-0.7
3,928,141	-				-1.5
3,928,141	-				-1.0
3,928,141	-				+1.3
3,928,165	+				+2.7
3,928,166	-				-2.0
3,928,166	-				-0.5
3,928,168	+				+0.6
3,928,168	+				-0.7
3,928,168	+				-0.7
3,928,168	+				-0.7
3,928,168	+				+0.4
3,928,168	+				+0.8
3,928,169	-				-0.0
3,928,169	-				+0.6
3,928,226	+				-1.3
3,928,226	+				-0.7
3,928,227	-				-0.7
3,928,251	-				+4.3
3,928,482	+				+1.1
3,928,536	+				+0.4
3,928,536	+				+1.8
3,928,536	+				+0.8
3,928,536	+				-0.7
3,928,536	+				-0.2
3,928,537	-				+0.3
3,928,539	+				-0.3
3,928,539	+				+0.8
3,928,626	+				-1.2
3,928,631	-				-1.0
3,928,639	+				-2.5
3,928,639	+				-0.2
3,928,639	+				-1.7
3,928,640	-				-1.2
3,928,640	-				+0.3
3,928,640	-				+0.4
3,928,640	-				-2.3
3,928,643	+				-0.3
3,928,643	+				+0.4
3,928,643	+				-0.7
3,928,644	-				-0.2
3,928,644	-				-0.7
3,928,652	+				+1.2
3,928,652	+				+0.3
3,928,652	+				+0.6
3,928,652	+				-0.5
3,928,652	+				+0.0
3,928,652	+				+0.3
3,928,653	-				+0.6
3,928,653	-				+0.8
3,928,653	-				-2.5
3,928,653	-				-0.2
3,928,653	-				-1.2
3,928,653	-				-0.6
3,928,656	+				+1.2
3,928,656	+				+1.1
3,928,656	+				-2.3
3,928,656	+				-1.5
3,928,851	+				+0.8
3,928,852	-		HGI48_RS17555	0.20	+0.5
3,928,852	-		HGI48_RS17555	0.20	-1.2
3,928,878	+		HGI48_RS17555	0.22	+0.3
3,928,878	+		HGI48_RS17555	0.22	-0.2
3,928,879	-		HGI48_RS17555	0.22	-0.5
3,928,879	-		HGI48_RS17555	0.22	-0.6
3,928,879	-		HGI48_RS17555	0.22	-0.0
3,928,879	-		HGI48_RS17555	0.22	+0.2
3,928,978	+		HGI48_RS17555	0.32	-0.2
3,928,978	+		HGI48_RS17555	0.32	-0.2
3,928,978	+		HGI48_RS17555	0.32	-0.5
3,928,979	-		HGI48_RS17555	0.32	+1.3
3,928,979	-		HGI48_RS17555	0.32	-0.0
3,928,997	-				+0.8
3,928,997	-		HGI48_RS17555	0.34	-0.5
3,929,016	+		HGI48_RS17555	0.36	-1.2
3,929,016	+		HGI48_RS17555	0.36	-0.3
3,929,016	+		HGI48_RS17555	0.36	+1.1
3,929,017	-		HGI48_RS17555	0.36	-1.0
3,929,017	-		HGI48_RS17555	0.36	-0.7
3,929,027	+		HGI48_RS17555	0.37	-0.4
3,929,086	+		HGI48_RS17555	0.43	+0.4
3,929,087	-		HGI48_RS17555	0.43	-0.2