Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17295

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,871,857	+				-0.4
3,871,857	+				-0.4
3,871,858	-				+1.5
3,871,903	+		HGI48_RS17290	0.11	-1.8
3,871,903	+		HGI48_RS17290	0.11	-0.2
3,871,904	-		HGI48_RS17290	0.11	+1.6
3,871,945	+		HGI48_RS17290	0.17	+0.6
3,871,945	+		HGI48_RS17290	0.17	-0.4
3,871,946	-		HGI48_RS17290	0.17	-1.8
3,871,946	-		HGI48_RS17290	0.17	-1.4
3,872,147	-		HGI48_RS17290	0.43	-1.0
3,872,169	+		HGI48_RS17290	0.46	-2.0
3,872,169	+		HGI48_RS17290	0.46	-0.2
3,872,170	-		HGI48_RS17290	0.47	+0.4
3,872,170	-		HGI48_RS17290	0.47	+0.6
3,872,312	+		HGI48_RS17290	0.65	-0.5
3,872,313	-		HGI48_RS17290	0.66	-0.1
3,872,313	-		HGI48_RS17290	0.66	-1.5
3,872,313	-		HGI48_RS17290	0.66	-0.5
3,872,313	-		HGI48_RS17290	0.66	+0.4
3,872,437	+		HGI48_RS17290	0.82	-0.0
3,872,444	-		HGI48_RS17290	0.83	+0.4
3,872,462	+		HGI48_RS17290	0.85	+0.2
3,872,462	+		HGI48_RS17290	0.85	-0.2
3,872,462	+		HGI48_RS17290	0.85	+0.8
3,872,462	+		HGI48_RS17290	0.85	+0.6
3,872,463	-				+0.8
3,872,463	-		HGI48_RS17290	0.86	-1.5
3,872,463	-				+1.2
3,872,463	-		HGI48_RS17290	0.86	-0.2
3,872,463	-		HGI48_RS17290	0.86	+0.2
3,872,463	-		HGI48_RS17290	0.86	-1.8
3,872,463	-		HGI48_RS17290	0.86	+0.8
3,872,464	+		HGI48_RS17290	0.86	-0.8
3,872,464	+		HGI48_RS17290	0.86	-0.2
3,872,483	+		HGI48_RS17290	0.88	-0.7
3,872,535	+				-1.2
3,872,536	-				+1.5
3,872,536	-				+1.1
3,872,627	+				-0.6
3,872,628	-				-0.8
3,872,634	+				-0.3
3,872,634	+				-0.2
3,872,665	+				-0.5
3,872,665	+				+0.8
3,872,665	+				+0.3
3,872,665	+				-2.7
3,872,665	+				+2.2
3,872,666	-				+0.0
3,872,669	+				-0.9
3,872,669	+				+2.4
3,872,670	-				+0.2
3,872,701	-				+1.1
3,872,705	-				+0.8
3,872,719	+				-2.4
3,872,758	-				+0.1
3,872,768	-				+0.1
3,872,768	-				-0.8
3,872,771	-				-0.4
3,872,771	-				+0.2
3,872,771	-				+0.3
3,872,783	+				-0.8
3,872,784	-				-0.7
3,872,793	+				-1.2
3,872,793	+				-1.3
3,872,793	+				-1.4
3,872,793	+				-0.8
3,872,794	-				+1.5
3,872,794	-				-1.0
3,872,794	-				-0.9
3,872,956	-				+1.7
3,872,961	+				-1.2
3,872,970	+				-0.5
3,872,983	+				+0.2
3,872,983	+				+0.6
3,872,983	+				+0.2
3,872,983	+				+1.4
3,872,983	+				-1.2
3,872,984	-				+0.8
3,873,016	+		HGI48_RS17295	0.11	-0.3
3,873,016	+		HGI48_RS17295	0.11	+0.8
3,873,016	+		HGI48_RS17295	0.11	-0.8
3,873,016	+		HGI48_RS17295	0.11	+1.4
3,873,016	+		HGI48_RS17295	0.11	-0.2
3,873,017	-		HGI48_RS17295	0.11	-0.2
3,873,017	-		HGI48_RS17295	0.11	-2.7
3,873,017	-		HGI48_RS17295	0.11	-0.8
3,873,017	-		HGI48_RS17295	0.11	+0.2
3,873,017	-		HGI48_RS17295	0.11	+0.5
3,873,018	+				+2.1
3,873,018	+		HGI48_RS17295	0.11	+0.0
3,873,018	+		HGI48_RS17295	0.11	-0.3
3,873,019	-		HGI48_RS17295	0.11	-2.4
3,873,226	-		HGI48_RS17295	0.22	-2.0
3,873,267	+		HGI48_RS17295	0.24	+0.4
3,873,268	-		HGI48_RS17295	0.24	+0.1
3,873,268	-		HGI48_RS17295	0.24	-0.1
3,873,335	+				-0.2
3,873,352	+		HGI48_RS17295	0.29	-2.4
3,873,352	+		HGI48_RS17295	0.29	+0.3
3,873,352	+		HGI48_RS17295	0.29	-0.3
3,873,352	+		HGI48_RS17295	0.29	-0.7
3,873,352	+		HGI48_RS17295	0.29	-1.7
3,873,352	+		HGI48_RS17295	0.29	-2.4
3,873,352	+		HGI48_RS17295	0.29	-1.2
3,873,352	+		HGI48_RS17295	0.29	+0.2
3,873,352	+		HGI48_RS17295	0.29	-0.4
3,873,352	+		HGI48_RS17295	0.29	-0.8
3,873,352	+		HGI48_RS17295	0.29	-0.6
3,873,352	+		HGI48_RS17295	0.29	-1.8
3,873,353	-		HGI48_RS17295	0.29	+0.5
3,873,353	-		HGI48_RS17295	0.29	+0.3
3,873,353	-		HGI48_RS17295	0.29	+0.2
3,873,353	-		HGI48_RS17295	0.29	-1.8
3,873,353	-		HGI48_RS17295	0.29	-1.0
3,873,353	-		HGI48_RS17295	0.29	-0.1
3,873,354	+		HGI48_RS17295	0.29	+1.1
3,873,354	+		HGI48_RS17295	0.29	-1.8
3,873,354	+		HGI48_RS17295	0.29	-0.3
3,873,354	+		HGI48_RS17295	0.29	+0.5
3,873,354	+		HGI48_RS17295	0.29	+0.4
3,873,355	-		HGI48_RS17295	0.29	-1.5
3,873,355	-		HGI48_RS17295	0.29	-0.8
3,873,355	-		HGI48_RS17295	0.29	+0.0
3,873,355	-		HGI48_RS17295	0.29	+0.3
3,873,355	-		HGI48_RS17295	0.29	+0.4
3,873,456	+		HGI48_RS17295	0.34	-0.3
3,873,457	-				-0.8
3,873,457	-		HGI48_RS17295	0.34	-0.6
3,873,529	+		HGI48_RS17295	0.38	-0.9
3,873,529	+		HGI48_RS17295	0.38	-0.7
3,873,529	+		HGI48_RS17295	0.38	+0.3
3,873,530	-		HGI48_RS17295	0.38	-0.0
3,873,536	+		HGI48_RS17295	0.38	-1.1
3,873,536	+		HGI48_RS17295	0.38	-1.8
3,873,537	-		HGI48_RS17295	0.38	-1.2
3,873,630	+		HGI48_RS17295	0.43	-0.8
3,873,631	-		HGI48_RS17295	0.43	+0.1
3,873,670	+		HGI48_RS17295	0.45	-0.4
3,873,671	-		HGI48_RS17295	0.45	-1.7
3,873,855	+		HGI48_RS17295	0.55	-0.5
3,873,856	-		HGI48_RS17295	0.55	+2.4
3,874,460	+		HGI48_RS17295	0.86	+0.0
3,874,460	+		HGI48_RS17295	0.86	-0.5
3,874,460	+		HGI48_RS17295	0.86	+0.2
3,874,461	-		HGI48_RS17295	0.86	-1.0
3,874,461	-		HGI48_RS17295	0.86	-1.5
3,874,605	+				-1.1
3,874,831	+				+0.3
3,874,836	+				+1.1
3,874,836	+				-0.2
3,874,836	+				+1.0
3,874,837	-				-0.2
3,874,838	+				-1.8
3,874,846	+				+0.1
3,874,846	+				+0.5
3,874,846	+				+1.1
3,874,846	+				+0.6
3,874,847	-				+0.4
3,874,847	-				-0.4
3,874,872	+				+0.6
3,874,872	+				-1.8
3,874,872	+				+1.4
3,874,872	+				+1.4
3,874,872	+				+0.6
3,874,872	+				+0.0
3,874,872	+				+0.2
3,874,872	+				-0.0
3,874,872	+				-0.2
3,874,873	-				+1.5
3,874,873	-				+0.3
3,874,873	-				+0.2
3,874,873	-				+1.0
3,874,873	-				-1.2
3,874,892	+				-0.2
3,874,893	-				+0.5
3,874,893	-				+0.2
3,874,895	+				-0.2
3,874,895	+				-0.2
3,874,895	+				-0.7
3,874,959	+		HGI48_RS17300	0.23	+0.8
3,874,960	-		HGI48_RS17300	0.24	+0.2
3,874,960	-		HGI48_RS17300	0.24	-1.0
3,874,960	-		HGI48_RS17300	0.24	-0.2
3,874,960	-		HGI48_RS17300	0.24	+1.0
3,875,035	+		HGI48_RS17300	0.44	-0.9
3,875,035	+		HGI48_RS17300	0.44	-1.2
3,875,035	+		HGI48_RS17300	0.44	-0.0
3,875,035	+		HGI48_RS17300	0.44	-0.2
3,875,035	+		HGI48_RS17300	0.44	-1.4
3,875,035	+		HGI48_RS17300	0.44	-1.0
3,875,036	-		HGI48_RS17300	0.44	+0.2
3,875,036	-		HGI48_RS17300	0.44	-1.9
3,875,072	+		HGI48_RS17300	0.54	+2.2
3,875,073	-		HGI48_RS17300	0.54	-1.0
3,875,105	+		HGI48_RS17300	0.63	-0.2
3,875,106	-		HGI48_RS17300	0.63	-0.9
3,875,106	-				+0.8
3,875,137	+		HGI48_RS17300	0.72	-2.0
3,875,137	+		HGI48_RS17300	0.72	+1.4
3,875,137	+				+1.4
3,875,138	-		HGI48_RS17300	0.72	+0.4
3,875,138	-		HGI48_RS17300	0.72	+0.8
3,875,138	-		HGI48_RS17300	0.72	+0.2
3,875,184	+		HGI48_RS17300	0.84	+5.0
3,875,184	+		HGI48_RS17300	0.84	-0.3
3,875,184	+		HGI48_RS17300	0.84	-1.7
3,875,184	+		HGI48_RS17300	0.84	-0.5
3,875,184	+		HGI48_RS17300	0.84	+0.6
3,875,184	+		HGI48_RS17300	0.84	-0.1
3,875,184	+		HGI48_RS17300	0.84	-0.2
3,875,185	-		HGI48_RS17300	0.85	+0.5
3,875,185	-		HGI48_RS17300	0.85	-0.5
3,875,185	-				-0.2
3,875,185	-		HGI48_RS17300	0.85	-2.7
3,875,185	-		HGI48_RS17300	0.85	+0.9
3,875,281	+				+1.3
3,875,281	+				+0.5
3,875,282	-				-0.0
3,875,282	-				-0.4
3,875,318	-		HGI48_RS17305	0.12	-1.8
3,875,387	+		HGI48_RS17305	0.37	+1.6
3,875,387	+		HGI48_RS17305	0.37	-1.2
3,875,387	+				-0.8
3,875,388	-		HGI48_RS17305	0.37	-1.8
3,875,401	+		HGI48_RS17305	0.42	-0.2
3,875,402	-		HGI48_RS17305	0.42	+0.3
3,875,412	-		HGI48_RS17305	0.46	-2.2
3,875,559	+				-0.8
3,875,559	+				+0.2
3,875,560	-				-0.4
3,875,586	+				-2.4
3,875,586	+				-0.5
3,875,586	+				-0.3
3,875,587	-				+0.4
3,875,601	+				-0.8
3,875,601	+				+0.8
3,875,601	+				+0.1
3,875,602	-				-1.5
3,875,602	-				-1.5
3,875,602	-				+1.3
3,875,602	-				+0.2
3,875,602	-				-0.7
3,875,602	-				+0.2
3,875,602	-				-0.8
3,875,602	-				+1.2
3,875,616	+				-0.8
3,875,616	+				+0.0
3,875,616	+				-2.5
3,875,616	+				+1.6
3,875,616	+				+4.1
3,875,617	-				-0.2
3,875,617	-				-0.4
3,875,617	-				+0.4
3,875,631	+				+0.0
3,875,631	+				-1.2
3,875,632	-				+0.8
3,875,632	-				-1.5
3,875,666	+				+0.8
3,875,667	-				-2.7