Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17080

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,822,595	+		HGI48_RS17075	0.40	+0.8
3,822,698	+		HGI48_RS17075	0.47	+0.5
3,822,996	+		HGI48_RS17075	0.69	-0.5
3,822,996	+		HGI48_RS17075	0.69	+0.3
3,822,996	+		HGI48_RS17075	0.69	+0.4
3,822,996	+		HGI48_RS17075	0.69	+1.1
3,822,996	+		HGI48_RS17075	0.69	+0.8
3,822,999	+		HGI48_RS17075	0.69	+0.0
3,822,999	+		HGI48_RS17075	0.69	+1.3
3,822,999	+		HGI48_RS17075	0.69	+1.4
3,822,999	+		HGI48_RS17075	0.69	-0.6
3,822,999	+		HGI48_RS17075	0.69	-0.1
3,822,999	+		HGI48_RS17075	0.69	-0.2
3,822,999	+		HGI48_RS17075	0.69	-1.2
3,822,999	+		HGI48_RS17075	0.69	-2.2
3,823,000	-		HGI48_RS17075	0.69	-0.6
3,823,000	-		HGI48_RS17075	0.69	-0.1
3,823,000	-		HGI48_RS17075	0.69	-0.7
3,823,001	+		HGI48_RS17075	0.69	-0.1
3,823,002	-		HGI48_RS17075	0.69	-0.2
3,823,002	-		HGI48_RS17075	0.69	-0.6
3,823,002	-		HGI48_RS17075	0.69	-1.6
3,823,032	+		HGI48_RS17075	0.71	-3.0
3,823,331	+				+0.5
3,823,410	+				-2.2
3,823,410	+				-2.8
3,823,423	+				-0.3
3,823,423	+				-1.8
3,823,423	+				+0.8
3,823,423	+				-0.1
3,823,423	+				+0.9
3,823,424	-				-0.8
3,823,424	-				-0.3
3,823,424	-				-0.8
3,823,424	-				-0.2
3,823,443	+				-0.8
3,823,493	+				+0.8
3,823,493	+				-2.0
3,823,493	+				-0.6
3,823,493	+				-0.9
3,823,494	-				+1.5
3,823,510	+				+1.3
3,823,510	+				+0.3
3,823,510	+				-0.2
3,823,510	+				-0.2
3,823,510	+				-0.8
3,823,510	+				+0.8
3,823,510	+				+2.3
3,823,511	-				-0.5
3,823,511	-				-0.5
3,823,511	-				+0.8
3,823,511	-				-0.2
3,823,511	-				+0.8
3,823,511	-				-0.2
3,823,511	-				-0.2
3,823,561	+				+0.3
3,823,586	-				-0.4
3,823,625	-				-0.0
3,823,655	+				-0.6
3,823,655	+				-2.4
3,823,656	-				-0.2
3,823,702	+				+0.2
3,823,702	+				-2.6
3,823,702	+				+0.8
3,823,702	+				+0.2
3,823,702	+				-0.4
3,823,703	-				-1.2
3,823,703	-				+0.1
3,823,703	-				+0.3
3,823,703	-				-0.8
3,823,703	-				-0.3
3,823,703	-				+0.0
3,823,949	+		HGI48_RS17080	0.17	-1.2
3,823,950	-		HGI48_RS17080	0.17	-0.8
3,823,950	-		HGI48_RS17080	0.17	+0.2
3,823,950	-		HGI48_RS17080	0.17	-1.2
3,824,061	-		HGI48_RS17080	0.21	-0.1
3,824,261	+				+0.2
3,824,261	+		HGI48_RS17080	0.28	+1.1
3,824,261	+		HGI48_RS17080	0.28	+0.3
3,824,261	+		HGI48_RS17080	0.28	+0.4
3,824,261	+		HGI48_RS17080	0.28	+0.8
3,824,261	+		HGI48_RS17080	0.28	+1.2
3,824,261	+				+1.4
3,824,261	+		HGI48_RS17080	0.28	-0.8
3,824,261	+		HGI48_RS17080	0.28	-2.2
3,824,261	+		HGI48_RS17080	0.28	-1.0
3,824,262	-		HGI48_RS17080	0.28	+0.2
3,824,262	-		HGI48_RS17080	0.28	+0.2
3,824,262	-		HGI48_RS17080	0.28	-0.3
3,824,262	-		HGI48_RS17080	0.28	+0.1
3,824,262	-		HGI48_RS17080	0.28	-1.2
3,824,462	+		HGI48_RS17080	0.35	+1.4
3,824,462	+		HGI48_RS17080	0.35	+0.4
3,824,462	+		HGI48_RS17080	0.35	+2.0
3,824,503	+		HGI48_RS17080	0.37	-2.0
3,824,504	-				+0.8
3,824,518	-		HGI48_RS17080	0.37	-0.2
3,824,602	+		HGI48_RS17080	0.40	+0.8
3,824,602	+		HGI48_RS17080	0.40	-0.4
3,824,602	+		HGI48_RS17080	0.40	-1.5
3,824,602	+				-0.8
3,824,603	-		HGI48_RS17080	0.40	-1.2
3,824,603	-		HGI48_RS17080	0.40	-0.8
3,824,603	-		HGI48_RS17080	0.40	-0.0
3,824,603	-		HGI48_RS17080	0.40	+1.9
3,825,016	+		HGI48_RS17080	0.55	-0.8
3,825,095	+		HGI48_RS17080	0.58	-0.2
3,825,095	+		HGI48_RS17080	0.58	-1.9
3,825,096	-		HGI48_RS17080	0.58	-1.8
3,825,096	-		HGI48_RS17080	0.58	-2.4
3,825,096	-		HGI48_RS17080	0.58	+0.8
3,825,096	-		HGI48_RS17080	0.58	-0.4
3,825,148	+		HGI48_RS17080	0.60	+0.5
3,825,148	+		HGI48_RS17080	0.60	-0.0
3,825,149	-		HGI48_RS17080	0.60	-1.8
3,825,167	+		HGI48_RS17080	0.61	-0.2
3,825,167	+		HGI48_RS17080	0.61	-2.9
3,825,168	-		HGI48_RS17080	0.61	-1.1
3,825,225	+		HGI48_RS17080	0.63	-1.5
3,825,244	+		HGI48_RS17080	0.64	-0.8
3,825,244	+		HGI48_RS17080	0.64	+0.9
3,825,244	+		HGI48_RS17080	0.64	-1.2
3,825,244	+		HGI48_RS17080	0.64	-1.0
3,825,245	-		HGI48_RS17080	0.64	-0.8
3,825,245	-		HGI48_RS17080	0.64	-0.7
3,825,245	-		HGI48_RS17080	0.64	-1.5
3,825,245	-		HGI48_RS17080	0.64	-0.9
3,825,431	-		HGI48_RS17080	0.70	-0.5
3,825,431	-		HGI48_RS17080	0.70	-1.5
3,825,431	-				-0.2
3,825,561	+		HGI48_RS17080	0.75	+0.2
3,825,562	-		HGI48_RS17080	0.75	+0.6
3,825,713	-		HGI48_RS17080	0.81	+0.7
3,825,713	-				+1.8
3,825,788	+		HGI48_RS17080	0.83	+0.0
3,825,788	+		HGI48_RS17080	0.83	-0.2
3,825,788	+		HGI48_RS17080	0.83	-0.2
3,825,788	+		HGI48_RS17080	0.83	+0.1
3,825,788	+		HGI48_RS17080	0.83	-1.5
3,825,788	+		HGI48_RS17080	0.83	+0.5
3,825,788	+		HGI48_RS17080	0.83	+1.1
3,825,789	-		HGI48_RS17080	0.83	-1.5
3,825,789	-		HGI48_RS17080	0.83	+0.5
3,825,947	-		HGI48_RS17080	0.89	-0.8
3,825,976	+				-0.8
3,825,976	+				+0.6
3,825,977	-				-1.1
3,826,048	+				-2.0
3,826,048	+				+0.0
3,826,088	+				+0.1
3,826,088	+				-2.0
3,826,088	+				+0.3
3,826,089	-				+1.2
3,826,089	-				-1.0
3,826,089	-				+0.9
3,826,089	-				+0.0
3,826,091	-				-1.7
3,826,209	+				-0.2
3,826,209	+				-1.2
3,826,209	+				-1.8
3,826,209	+				-0.5
3,826,209	+				+0.2
3,826,210	-				-0.2
3,826,210	-				-1.5
3,826,464	-				-0.8
3,826,900	-		HGI48_RS17085	0.48	-0.1
3,827,165	+		HGI48_RS17085	0.71	-1.2