Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16535

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,704,418	+		HGI48_RS16530	0.32	+1.4
3,704,418	+		HGI48_RS16530	0.32	-1.6
3,704,419	-		HGI48_RS16530	0.32	+0.2
3,704,419	-		HGI48_RS16530	0.32	-1.8
3,704,419	-				-0.3
3,704,419	-		HGI48_RS16530	0.32	+1.0
3,704,558	+		HGI48_RS16530	0.41	-3.1
3,704,566	-				+0.7
3,704,597	-		HGI48_RS16530	0.44	-0.3
3,704,597	-		HGI48_RS16530	0.44	-1.6
3,704,616	+		HGI48_RS16530	0.45	+1.1
3,704,639	-		HGI48_RS16530	0.47	-1.3
3,704,659	+		HGI48_RS16530	0.48	+0.3
3,704,659	+		HGI48_RS16530	0.48	-1.7
3,704,659	+		HGI48_RS16530	0.48	+0.4
3,704,659	+				-0.8
3,704,660	-				+1.2
3,704,663	+		HGI48_RS16530	0.49	-0.8
3,704,663	+		HGI48_RS16530	0.49	-0.7
3,704,663	+		HGI48_RS16530	0.49	+1.7
3,704,663	+		HGI48_RS16530	0.49	+0.0
3,704,664	-		HGI48_RS16530	0.49	-1.8
3,704,991	+		HGI48_RS16530	0.72	-0.1
3,704,991	+		HGI48_RS16530	0.72	-1.3
3,704,991	+		HGI48_RS16530	0.72	-0.1
3,704,992	-		HGI48_RS16530	0.72	+0.7
3,704,992	-		HGI48_RS16530	0.72	-0.1
3,704,992	-		HGI48_RS16530	0.72	-0.1
3,704,993	+		HGI48_RS16530	0.72	+0.4
3,704,993	+		HGI48_RS16530	0.72	-1.3
3,704,994	-		HGI48_RS16530	0.72	+0.5
3,704,994	-		HGI48_RS16530	0.72	-1.0
3,704,994	-		HGI48_RS16530	0.72	+0.3
3,704,994	-		HGI48_RS16530	0.72	+0.3
3,704,994	-		HGI48_RS16530	0.72	-0.7
3,705,065	+				-0.8
3,705,066	-		HGI48_RS16530	0.77	-1.4
3,705,066	-		HGI48_RS16530	0.77	-1.7
3,705,068	+		HGI48_RS16530	0.77	+0.3
3,705,068	+		HGI48_RS16530	0.77	-2.6
3,705,068	+		HGI48_RS16530	0.77	+0.5
3,705,068	+		HGI48_RS16530	0.77	-0.1
3,705,068	+		HGI48_RS16530	0.77	+1.0
3,705,068	+		HGI48_RS16530	0.77	+0.0
3,705,068	+		HGI48_RS16530	0.77	+1.2
3,705,069	-		HGI48_RS16530	0.77	-0.6
3,705,069	-		HGI48_RS16530	0.77	-1.6
3,705,069	-		HGI48_RS16530	0.77	-0.3
3,705,119	+		HGI48_RS16530	0.80	+0.6
3,705,119	+		HGI48_RS16530	0.80	+0.0
3,705,120	-		HGI48_RS16530	0.81	+0.5
3,705,140	+		HGI48_RS16530	0.82	-0.1
3,705,150	+		HGI48_RS16530	0.83	-0.1
3,705,150	+		HGI48_RS16530	0.83	-1.3
3,705,151	-		HGI48_RS16530	0.83	+1.2
3,705,165	+		HGI48_RS16530	0.84	+0.3
3,705,165	+		HGI48_RS16530	0.84	+0.5
3,705,165	+				+1.7
3,705,165	+				+1.7
3,705,166	-				-0.8
3,705,166	-		HGI48_RS16530	0.84	+0.7
3,705,166	-		HGI48_RS16530	0.84	-2.1
3,705,166	-		HGI48_RS16530	0.84	-0.6
3,705,166	-		HGI48_RS16530	0.84	-1.8
3,705,166	-		HGI48_RS16530	0.84	+0.5
3,705,167	+		HGI48_RS16530	0.84	+0.0
3,705,167	+		HGI48_RS16530	0.84	-0.8
3,705,167	+				-0.8
3,705,167	+				-0.3
3,705,167	+		HGI48_RS16530	0.84	-0.3
3,705,167	+		HGI48_RS16530	0.84	-0.0
3,705,167	+				-0.8
3,705,168	-		HGI48_RS16530	0.84	+1.2
3,705,168	-		HGI48_RS16530	0.84	-0.0
3,705,206	-		HGI48_RS16530	0.86	-1.3
3,705,265	-				-1.8
3,705,277	+				+1.4
3,705,277	+				-0.3
3,705,277	+				+0.0
3,705,278	-				+0.7
3,705,278	-				-0.8
3,705,278	-				+1.0
3,705,354	+				+0.2
3,705,354	+				+0.6
3,705,355	-				-1.0
3,705,422	+				+0.8
3,705,422	+				-1.6
3,705,422	+				+0.3
3,705,422	+				+0.4
3,705,423	-				-0.0
3,705,423	-				-2.1
3,705,423	-				-0.3
3,705,423	-				+0.7
3,705,423	-				-1.3
3,705,424	+				+0.2
3,705,424	+				-0.3
3,705,424	+				+0.7
3,705,425	-				-0.3
3,705,425	-				+2.3
3,705,453	+				+0.1
3,705,458	+				-0.3
3,705,459	-				+1.3
3,705,489	+				-0.9
3,705,490	-				-1.1
3,705,536	+		HGI48_RS16535	0.13	+0.2
3,705,536	+		HGI48_RS16535	0.13	-0.5
3,705,536	+		HGI48_RS16535	0.13	+0.2
3,705,537	-		HGI48_RS16535	0.13	-1.3
3,705,537	-				+1.2
3,705,581	+		HGI48_RS16535	0.17	-0.6
3,705,582	-		HGI48_RS16535	0.17	-2.1
3,705,582	-		HGI48_RS16535	0.17	+0.0
3,705,582	-		HGI48_RS16535	0.17	-1.8
3,705,582	-		HGI48_RS16535	0.17	-0.5
3,705,582	-		HGI48_RS16535	0.17	+0.3
3,705,583	+		HGI48_RS16535	0.17	+0.5
3,705,583	+		HGI48_RS16535	0.17	+1.7
3,705,583	+		HGI48_RS16535	0.17	-0.6
3,705,583	+		HGI48_RS16535	0.17	+0.2
3,705,583	+		HGI48_RS16535	0.17	-1.4
3,705,584	-		HGI48_RS16535	0.17	+0.7
3,705,584	-		HGI48_RS16535	0.17	+0.5
3,705,584	-		HGI48_RS16535	0.17	-0.5
3,705,584	-		HGI48_RS16535	0.17	+0.7
3,705,584	-		HGI48_RS16535	0.17	-3.4
3,705,584	-		HGI48_RS16535	0.17	+0.3
3,705,584	-		HGI48_RS16535	0.17	-1.4
3,705,584	-		HGI48_RS16535	0.17	-0.3
3,705,584	-		HGI48_RS16535	0.17	-1.1
3,705,584	-		HGI48_RS16535	0.17	-0.1
3,705,695	+		HGI48_RS16535	0.27	+0.3
3,705,695	+		HGI48_RS16535	0.27	+1.1
3,705,696	-		HGI48_RS16535	0.27	-1.6
3,705,696	-		HGI48_RS16535	0.27	-0.7
3,705,697	+		HGI48_RS16535	0.27	-0.3
3,705,697	+		HGI48_RS16535	0.27	-2.3
3,705,698	-		HGI48_RS16535	0.27	+0.0
3,705,698	-		HGI48_RS16535	0.27	-1.3
3,705,698	-		HGI48_RS16535	0.27	+0.5
3,705,698	-		HGI48_RS16535	0.27	+0.1
3,705,698	-		HGI48_RS16535	0.27	-2.1
3,705,698	-		HGI48_RS16535	0.27	-2.0
3,705,846	-		HGI48_RS16535	0.40	-1.3
3,705,846	-		HGI48_RS16535	0.40	-0.8
3,705,846	-		HGI48_RS16535	0.40	+0.3
3,705,871	+		HGI48_RS16535	0.42	-1.4
3,705,872	-		HGI48_RS16535	0.43	-0.3
3,705,877	+		HGI48_RS16535	0.43	-1.6
3,705,878	-		HGI48_RS16535	0.43	+0.7
3,705,909	+		HGI48_RS16535	0.46	-0.4
3,705,910	-		HGI48_RS16535	0.46	-2.0
3,705,921	-		HGI48_RS16535	0.47	-0.1
3,705,957	-		HGI48_RS16535	0.50	-0.3
3,705,979	+		HGI48_RS16535	0.52	-2.1
3,706,068	-		HGI48_RS16535	0.60	+0.0
3,706,088	-		HGI48_RS16535	0.62	+0.7
3,706,107	-		HGI48_RS16535	0.64	-0.0
3,706,119	-		HGI48_RS16535	0.65	+0.0
3,706,119	-		HGI48_RS16535	0.65	+0.7
3,706,127	-		HGI48_RS16535	0.65	-1.3
3,706,127	-		HGI48_RS16535	0.65	+0.1
3,706,127	-		HGI48_RS16535	0.65	-0.7
3,706,135	+		HGI48_RS16535	0.66	-0.7
3,706,135	+		HGI48_RS16535	0.66	+0.9
3,706,135	+		HGI48_RS16535	0.66	-0.5
3,706,135	+		HGI48_RS16535	0.66	+0.0
3,706,136	-		HGI48_RS16535	0.66	-0.9
3,706,136	-		HGI48_RS16535	0.66	-0.3
3,706,136	-		HGI48_RS16535	0.66	+0.2
3,706,203	-		HGI48_RS16535	0.72	-0.3
3,706,220	+				-0.8
3,706,220	+				-0.3
3,706,221	-		HGI48_RS16535	0.74	+0.4
3,706,297	-		HGI48_RS16535	0.81	-0.6
3,706,328	+				+0.2
3,706,328	+		HGI48_RS16535	0.83	+0.3
3,706,330	+		HGI48_RS16535	0.83	+1.0
3,706,331	-		HGI48_RS16535	0.84	-0.3
3,706,331	-				-0.3
3,706,361	+		HGI48_RS16535	0.86	+0.9
3,706,361	+		HGI48_RS16535	0.86	+0.0
3,706,361	+		HGI48_RS16535	0.86	-1.8
3,706,361	+		HGI48_RS16535	0.86	-1.1
3,706,362	-		HGI48_RS16535	0.86	-0.1
3,706,362	-		HGI48_RS16535	0.86	-2.1
3,706,363	+		HGI48_RS16535	0.86	-0.3
3,706,364	-		HGI48_RS16535	0.87	-0.7
3,706,364	-		HGI48_RS16535	0.87	+0.1
3,706,364	-		HGI48_RS16535	0.87	-1.6
3,706,379	+		HGI48_RS16535	0.88	-1.3
3,706,380	-		HGI48_RS16535	0.88	-1.8
3,706,423	+				+0.7
3,706,424	-				-1.8
3,706,424	-				-0.3
3,706,424	-				+1.3
3,706,510	+				+0.6
3,706,511	-				+0.5
3,706,555	+				-1.1
3,706,556	-				-0.4
3,706,613	+				+0.7
3,706,637	+				-0.1
3,706,637	+				+0.2
3,706,637	+				-0.2
3,706,637	+				+0.1
3,706,637	+				-1.4
3,706,638	-				-1.3
3,706,638	-				-1.8
3,706,650	-				-0.3
3,706,650	-				+0.0
3,706,650	-				+1.2
3,706,744	+				-1.0
3,706,744	+				+1.1
3,706,744	+				+0.2
3,706,745	-				-0.7
3,706,745	-				+0.2
3,706,745	-				-0.0
3,706,745	-				-0.5
3,706,748	+				+0.3
3,706,748	+				+1.5
3,706,748	+				-0.6
3,706,748	+				+0.1
3,706,748	+				+0.7
3,706,748	+				-1.6
3,706,748	+				-3.0
3,706,748	+				+0.4
3,706,748	+				+0.2
3,706,748	+				+1.2
3,706,748	+				+2.2
3,706,749	-				+1.7
3,706,749	-				-1.4
3,706,749	-				+0.4
3,706,749	-				+0.4
3,706,749	-				-1.8
3,706,757	-				-1.6
3,706,757	-				+1.3
3,706,779	+		HGI48_RS16540	0.12	+1.7
3,706,826	+		HGI48_RS16540	0.16	+0.4
3,706,827	-		HGI48_RS16540	0.16	-1.2
3,706,972	+		HGI48_RS16540	0.29	-0.8
3,706,972	+		HGI48_RS16540	0.29	+0.1
3,706,972	+		HGI48_RS16540	0.29	-0.6
3,706,972	+		HGI48_RS16540	0.29	+0.3
3,706,972	+		HGI48_RS16540	0.29	+0.7
3,706,972	+		HGI48_RS16540	0.29	+1.1
3,706,973	-				+3.7
3,707,174	-		HGI48_RS16540	0.47	-0.8
3,707,174	-		HGI48_RS16540	0.47	+0.0
3,707,212	+		HGI48_RS16540	0.50	-1.3
3,707,212	+		HGI48_RS16540	0.50	+1.6
3,707,244	+		HGI48_RS16540	0.53	+0.4
3,707,245	-		HGI48_RS16540	0.53	+0.4
3,707,245	-		HGI48_RS16540	0.53	+0.5
3,707,245	-		HGI48_RS16540	0.53	-0.2
3,707,261	+		HGI48_RS16540	0.54	-1.3
3,707,261	+				-0.8
3,707,269	-		HGI48_RS16540	0.55	+0.5
3,707,325	-		HGI48_RS16540	0.60	+0.7
3,707,421	-		HGI48_RS16540	0.68	+0.3
3,707,473	+		HGI48_RS16540	0.73	-2.3
3,707,473	+		HGI48_RS16540	0.73	+1.3
3,707,473	+				+0.2
3,707,473	+		HGI48_RS16540	0.73	+0.3
3,707,474	-				+2.0
3,707,474	-		HGI48_RS16540	0.73	-0.3
3,707,474	-		HGI48_RS16540	0.73	+0.0
3,707,474	-				+1.7
3,707,474	-		HGI48_RS16540	0.73	-0.1
3,707,474	-				+1.3
3,707,477	+		HGI48_RS16540	0.73	+1.4
3,707,477	+		HGI48_RS16540	0.73	-0.3
3,707,477	+		HGI48_RS16540	0.73	+0.5
3,707,478	-		HGI48_RS16540	0.73	+1.1
3,707,478	-		HGI48_RS16540	0.73	+0.7
3,707,478	-		HGI48_RS16540	0.73	-0.2
3,707,478	-		HGI48_RS16540	0.73	+1.1
3,707,506	-		HGI48_RS16540	0.76	-0.3
3,707,506	-		HGI48_RS16540	0.76	-0.3