Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16145

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,623,177	+		HGI48_RS16135	0.43	-0.3
3,623,177	+		HGI48_RS16135	0.43	-0.5
3,623,177	+		HGI48_RS16135	0.43	+1.2
3,623,177	+		HGI48_RS16135	0.43	-3.3
3,623,177	+		HGI48_RS16135	0.43	+0.0
3,623,177	+				-0.9
3,623,178	-				+1.7
3,623,178	-		HGI48_RS16135	0.43	-1.6
3,623,194	-		HGI48_RS16135	0.45	-1.3
3,623,252	+		HGI48_RS16135	0.52	+0.3
3,623,252	+		HGI48_RS16135	0.52	+1.3
3,623,252	+		HGI48_RS16135	0.52	-0.9
3,623,252	+		HGI48_RS16135	0.52	-0.1
3,623,253	-		HGI48_RS16135	0.52	+0.3
3,623,289	+		HGI48_RS16135	0.57	-1.1
3,623,290	-		HGI48_RS16135	0.57	+0.1
3,623,306	-		HGI48_RS16135	0.59	+0.4
3,623,436	+		HGI48_RS16135	0.75	-0.9
3,623,437	-		HGI48_RS16135	0.75	-0.3
3,623,452	+		HGI48_RS16135	0.77	-0.2
3,623,452	+		HGI48_RS16135	0.77	-0.2
3,623,460	+		HGI48_RS16135	0.78	-1.0
3,623,460	+		HGI48_RS16135	0.78	-1.3
3,623,517	+		HGI48_RS16135	0.85	+0.4
3,623,517	+		HGI48_RS16135	0.85	+0.6
3,623,517	+		HGI48_RS16135	0.85	+1.3
3,623,517	+		HGI48_RS16135	0.85	-0.6
3,623,518	-		HGI48_RS16135	0.85	-1.3
3,623,518	-		HGI48_RS16135	0.85	+1.7
3,623,518	-		HGI48_RS16135	0.85	+0.7
3,623,518	-		HGI48_RS16135	0.85	-0.9
3,623,518	-		HGI48_RS16135	0.85	-0.6
3,623,518	-		HGI48_RS16135	0.85	-1.9
3,623,567	+				-0.2
3,623,567	+				-0.3
3,623,567	+				+0.0
3,623,568	-				-0.9
3,623,568	-				-0.0
3,623,568	-				+2.3
3,623,568	-				-0.5
3,623,568	-				+1.0
3,623,568	-				+2.0
3,623,604	+				+0.4
3,623,605	-				+0.1
3,623,605	-				+1.6
3,623,605	-				+0.2
3,623,605	-				-0.3
3,623,607	+				-1.2
3,623,746	-				+0.7
3,623,750	-				+1.1
3,623,750	-				+0.7
3,623,756	+				+1.5
3,623,756	+				+2.1
3,623,843	+				-0.9
3,623,843	+				+0.2
3,623,844	-				+1.7
3,623,859	+				-1.6
3,623,867	-				-0.9
3,623,867	-				-1.3
3,623,916	+		HGI48_RS16140	0.28	-0.1
3,623,917	-		HGI48_RS16140	0.28	+0.3
3,623,920	+		HGI48_RS16140	0.29	+1.9
3,623,920	+		HGI48_RS16140	0.29	-0.1
3,623,920	+		HGI48_RS16140	0.29	+0.3
3,623,920	+		HGI48_RS16140	0.29	-0.2
3,623,920	+		HGI48_RS16140	0.29	+0.7
3,623,920	+		HGI48_RS16140	0.29	-2.1
3,623,921	-		HGI48_RS16140	0.30	+0.3
3,623,921	-		HGI48_RS16140	0.30	+1.6
3,623,921	-		HGI48_RS16140	0.30	-0.2
3,623,921	-		HGI48_RS16140	0.30	+0.7
3,623,921	-		HGI48_RS16140	0.30	-0.5
3,623,921	-		HGI48_RS16140	0.30	+0.3
3,623,921	-		HGI48_RS16140	0.30	+1.1
3,623,921	-		HGI48_RS16140	0.30	+0.4
3,623,921	-		HGI48_RS16140	0.30	+1.1
3,623,933	-		HGI48_RS16140	0.35	-0.6
3,623,946	+		HGI48_RS16140	0.41	-0.6
3,623,947	-		HGI48_RS16140	0.41	-0.5
3,623,978	+		HGI48_RS16140	0.54	-0.3
3,623,979	-		HGI48_RS16140	0.55	-2.9
3,623,979	-		HGI48_RS16140	0.55	-1.5
3,623,979	-		HGI48_RS16140	0.55	+0.0
3,623,979	-		HGI48_RS16140	0.55	-0.5
3,624,108	+				-1.0
3,624,108	+				+1.2
3,624,109	-				-0.6
3,624,109	-				-1.6
3,624,109	-				-1.3
3,624,109	-				-1.6
3,624,109	-				-1.3
3,624,109	-				-0.2
3,624,109	-				-0.3
3,624,219	+		HGI48_RS16145	0.31	+0.3
3,624,219	+		HGI48_RS16145	0.31	-1.9
3,624,219	+		HGI48_RS16145	0.31	-1.2
3,624,220	-		HGI48_RS16145	0.31	-0.2
3,624,220	-		HGI48_RS16145	0.31	+0.4
3,624,241	-		HGI48_RS16145	0.36	+0.5
3,624,364	-		HGI48_RS16145	0.66	-0.7
3,624,384	-		HGI48_RS16145	0.71	-1.9
3,624,415	-		HGI48_RS16145	0.79	+1.4
3,624,448	+		HGI48_RS16145	0.87	+2.3
3,624,448	+		HGI48_RS16145	0.87	+0.3
3,624,448	+		HGI48_RS16145	0.87	-0.3
3,624,448	+		HGI48_RS16145	0.87	+1.3
3,624,448	+		HGI48_RS16145	0.87	-2.1
3,624,448	+		HGI48_RS16145	0.87	-1.3
3,624,449	-		HGI48_RS16145	0.87	-0.5
3,624,449	-		HGI48_RS16145	0.87	-0.3
3,624,449	-		HGI48_RS16145	0.87	+0.2
3,624,449	-		HGI48_RS16145	0.87	+0.7
3,624,449	-		HGI48_RS16145	0.87	+1.2
3,624,449	-		HGI48_RS16145	0.87	-0.0
3,624,449	-		HGI48_RS16145	0.87	-1.1
3,624,449	-		HGI48_RS16145	0.87	-1.1
3,624,457	+		HGI48_RS16145	0.89	-1.1
3,624,457	+		HGI48_RS16145	0.89	+0.9
3,624,458	-		HGI48_RS16145	0.89	-0.8
3,624,458	-		HGI48_RS16145	0.89	+0.1
3,624,458	-		HGI48_RS16145	0.89	+0.4
3,624,458	-		HGI48_RS16145	0.89	-0.4
3,624,527	+				+0.9
3,624,528	-				-0.3
3,624,558	-				+2.1
3,624,611	+				+0.7
3,624,612	-				-0.3
3,624,612	-				-0.3
3,624,612	-				-1.9
3,624,692	+				-0.5
3,624,692	+				+0.1
3,624,695	+		HGI48_RS16150	0.10	+0.5
3,624,695	+		HGI48_RS16150	0.10	+0.7
3,624,695	+		HGI48_RS16150	0.10	+0.9
3,624,709	-		HGI48_RS16150	0.11	-3.3
3,624,720	-		HGI48_RS16150	0.11	-1.3
3,624,720	-		HGI48_RS16150	0.11	+0.7
3,624,815	+		HGI48_RS16150	0.16	-1.3
3,624,815	+				+1.7
3,624,815	+		HGI48_RS16150	0.16	-0.4
3,624,816	-		HGI48_RS16150	0.16	+0.7
3,624,816	-		HGI48_RS16150	0.16	+0.1
3,624,816	-		HGI48_RS16150	0.16	-0.1
3,624,816	-		HGI48_RS16150	0.16	-0.2
3,624,816	-		HGI48_RS16150	0.16	-0.6
3,624,816	-		HGI48_RS16150	0.16	-0.3
3,624,816	-		HGI48_RS16150	0.16	+0.1
3,624,846	-		HGI48_RS16150	0.17	-0.8
3,625,027	+		HGI48_RS16150	0.26	+0.5
3,625,039	+		HGI48_RS16150	0.26	+0.7
3,625,039	+		HGI48_RS16150	0.26	-1.3
3,625,108	+		HGI48_RS16150	0.29	-0.6
3,625,109	-		HGI48_RS16150	0.29	+0.2
3,625,109	-		HGI48_RS16150	0.29	-0.8
3,625,109	-		HGI48_RS16150	0.29	-0.1
3,625,109	-		HGI48_RS16150	0.29	+1.2
3,625,109	-		HGI48_RS16150	0.29	-0.6
3,625,181	-				+1.4
3,625,212	-		HGI48_RS16150	0.34	-0.3
3,625,254	-		HGI48_RS16150	0.36	-0.6
3,625,366	+		HGI48_RS16150	0.41	+0.7
3,625,366	+		HGI48_RS16150	0.41	-0.3
3,625,366	+		HGI48_RS16150	0.41	+1.3
3,625,366	+				-0.9
3,625,367	-				+0.1
3,625,367	-		HGI48_RS16150	0.41	+1.1
3,625,367	-		HGI48_RS16150	0.41	-1.3
3,625,367	-		HGI48_RS16150	0.41	-0.7
3,625,367	-		HGI48_RS16150	0.41	-1.0
3,625,367	-		HGI48_RS16150	0.41	-0.5
3,625,367	-		HGI48_RS16150	0.41	-1.9
3,625,397	-		HGI48_RS16150	0.43	-0.7
3,625,433	+		HGI48_RS16150	0.44	+0.1
3,625,434	-		HGI48_RS16150	0.44	-0.7
3,625,434	-		HGI48_RS16150	0.44	-1.2
3,625,434	-				-0.3