Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16005

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,595,307	+		HGI48_RS16000	0.43	+0.3
3,595,310	+		HGI48_RS16000	0.43	-0.1
3,595,310	+		HGI48_RS16000	0.43	+1.3
3,595,391	+		HGI48_RS16000	0.48	-0.0
3,595,391	+				-0.9
3,595,460	-				+1.4
3,595,499	+		HGI48_RS16000	0.56	-0.3
3,595,499	+				-0.9
3,595,592	+		HGI48_RS16000	0.62	-0.4
3,595,592	+		HGI48_RS16000	0.62	-0.2
3,595,593	-		HGI48_RS16000	0.62	-0.1
3,595,593	-				+1.1
3,595,635	+		HGI48_RS16000	0.65	+0.1
3,595,636	-				+3.5
3,595,680	-		HGI48_RS16000	0.68	-1.3
3,595,725	+		HGI48_RS16000	0.71	+0.8
3,595,725	+		HGI48_RS16000	0.71	-0.0
3,595,747	+		HGI48_RS16000	0.73	+0.9
3,595,747	+		HGI48_RS16000	0.73	-0.5
3,595,748	-		HGI48_RS16000	0.73	+0.7
3,595,748	-		HGI48_RS16000	0.73	+1.0
3,595,748	-		HGI48_RS16000	0.73	+0.1
3,595,974	-		HGI48_RS16000	0.89	+0.2
3,596,144	+				+1.1
3,596,144	+				+1.0
3,596,144	+				-0.6
3,596,144	+				+0.7
3,596,144	+				-0.7
3,596,145	-				+0.1
3,596,145	-				-0.0
3,596,145	-				+0.7
3,596,182	+				-2.1
3,596,183	-				+0.4
3,596,183	-				-0.0
3,596,183	-				-0.0
3,596,232	+				+0.0
3,596,261	+				+1.1
3,596,336	+				+0.5
3,596,342	+				-0.7
3,596,342	+				-0.1
3,596,343	-				-0.3
3,596,343	-				+0.7
3,596,343	-				-0.7
3,596,344	+				+1.2
3,596,344	+				+0.1
3,596,344	+				-0.9
3,596,344	+				-0.7
3,596,344	+				-0.6
3,596,344	+				-2.3
3,596,344	+				-1.5
3,596,344	+				+0.5
3,596,344	+				-1.9
3,596,344	+				+0.2
3,596,345	-				-1.1
3,596,345	-				+0.1
3,596,366	+				-2.3
3,596,367	-				-1.5
3,596,391	-				+3.0
3,596,393	+				+1.2
3,596,393	+				+0.7
3,596,394	-				-0.5
3,596,394	-				+0.1
3,596,394	-				-0.9
3,596,394	-				+0.3
3,596,394	-				-2.6
3,596,394	-				-0.3
3,596,394	-				-1.3
3,596,396	+				-0.4
3,596,397	-				-0.3
3,596,397	-				+0.8
3,596,397	-				-3.1
3,596,397	-				+2.1
3,596,490	-		HGI48_RS16005	0.12	-3.1
3,596,579	+		HGI48_RS16005	0.18	+0.2
3,596,579	+		HGI48_RS16005	0.18	-1.3
3,596,579	+		HGI48_RS16005	0.18	-1.0
3,596,580	-		HGI48_RS16005	0.18	-0.5
3,596,580	-		HGI48_RS16005	0.18	-1.1
3,596,580	-		HGI48_RS16005	0.18	-0.9
3,596,580	-				+0.7
3,596,601	+				-0.9
3,596,601	+				-0.9
3,596,646	+		HGI48_RS16005	0.23	-2.8
3,596,647	-		HGI48_RS16005	0.23	-0.9
3,596,744	+				+0.1
3,596,745	-		HGI48_RS16005	0.29	-1.5
3,596,745	-		HGI48_RS16005	0.29	+0.8
3,596,784	-		HGI48_RS16005	0.32	-0.5
3,596,957	+		HGI48_RS16005	0.43	-0.6
3,596,957	+		HGI48_RS16005	0.43	-1.5
3,597,006	-		HGI48_RS16005	0.46	-0.6
3,597,012	+		HGI48_RS16005	0.47	-1.4
3,597,012	+				+3.3
3,597,013	-		HGI48_RS16005	0.47	-0.3
3,597,035	+		HGI48_RS16005	0.48	-0.8
3,597,035	+		HGI48_RS16005	0.48	-1.3
3,597,035	+		HGI48_RS16005	0.48	-0.7
3,597,035	+		HGI48_RS16005	0.48	-1.3
3,597,035	+		HGI48_RS16005	0.48	+1.0
3,597,035	+		HGI48_RS16005	0.48	-0.6
3,597,036	-				+0.7
3,597,036	-		HGI48_RS16005	0.48	-1.1
3,597,036	-		HGI48_RS16005	0.48	-2.1
3,597,036	-				+1.1
3,597,036	-		HGI48_RS16005	0.48	-2.3
3,597,036	-		HGI48_RS16005	0.48	+0.3
3,597,036	-		HGI48_RS16005	0.48	-1.9
3,597,036	-		HGI48_RS16005	0.48	-0.3
3,597,113	+		HGI48_RS16005	0.53	-1.6
3,597,114	-		HGI48_RS16005	0.53	-1.1
3,597,137	+		HGI48_RS16005	0.55	+0.7
3,597,137	+		HGI48_RS16005	0.55	+0.7
3,597,137	+		HGI48_RS16005	0.55	+0.2
3,597,137	+		HGI48_RS16005	0.55	-1.9
3,597,137	+		HGI48_RS16005	0.55	-2.6
3,597,138	-		HGI48_RS16005	0.55	-0.3
3,597,138	-		HGI48_RS16005	0.55	-0.1
3,597,143	+		HGI48_RS16005	0.55	-2.3
3,597,143	+		HGI48_RS16005	0.55	-1.2
3,597,170	+		HGI48_RS16005	0.57	-1.1
3,597,185	+				-0.3
3,597,185	+		HGI48_RS16005	0.58	-0.6
3,597,186	-		HGI48_RS16005	0.58	+0.9
3,597,196	-		HGI48_RS16005	0.59	-1.3
3,597,212	+		HGI48_RS16005	0.60	-0.3
3,597,213	-		HGI48_RS16005	0.60	+0.5
3,597,213	-		HGI48_RS16005	0.60	-0.9
3,597,213	-		HGI48_RS16005	0.60	-2.0
3,597,241	+		HGI48_RS16005	0.62	-1.6
3,597,420	+		HGI48_RS16005	0.74	-0.5
3,597,420	+		HGI48_RS16005	0.74	-1.2
3,597,421	-		HGI48_RS16005	0.74	-1.3
3,597,421	-		HGI48_RS16005	0.74	-1.1
3,597,421	-		HGI48_RS16005	0.74	-1.9
3,597,421	-		HGI48_RS16005	0.74	-1.2
3,597,552	+		HGI48_RS16005	0.82	+0.4
3,597,553	-		HGI48_RS16005	0.82	+0.1
3,597,582	+		HGI48_RS16005	0.84	-0.7
3,597,584	+		HGI48_RS16005	0.84	-0.2
3,597,584	+		HGI48_RS16005	0.84	-0.3
3,597,584	+		HGI48_RS16005	0.84	-1.1
3,597,585	-				+0.1
3,597,585	-		HGI48_RS16005	0.85	-2.1
3,597,585	-				+1.7
3,597,743	+				-0.9
3,597,743	+				+0.7
3,597,743	+				-0.5
3,597,744	-				-0.3
3,597,819	+				+0.7
3,597,819	+				-1.0
3,597,819	+				-0.3
3,597,820	-				+0.9
3,597,820	-				+3.0
3,597,820	-				-1.3
3,597,833	+				-0.6
3,597,833	+				+1.4
3,597,833	+				-1.4
3,597,833	+				-0.7
3,597,833	+				+0.7
3,597,833	+				-1.5
3,597,833	+				-0.5
3,597,833	+				-0.0
3,597,833	+				+1.7
3,597,833	+				-2.1
3,597,833	+				-2.3
3,597,834	-				+0.1
3,597,834	-				+1.3
3,597,834	-				-0.6
3,597,834	-				-1.6
3,597,834	-				+0.1
3,597,834	-				+1.9
3,597,834	-				+0.7
3,597,834	-				+0.1
3,597,919	+				+1.5
3,597,919	+				-3.1
3,597,938	+				+0.9
3,597,958	+				+0.2
3,597,958	+				-0.2
3,597,958	+				-0.9
3,597,986	+				-2.1