Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15450

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,474,409	+				-0.1
3,474,409	+				-1.5
3,474,409	+				-0.8
3,474,410	-				-0.0
3,474,410	-				+1.2
3,474,410	-				+1.6
3,474,410	-				-0.3
3,474,453	-				-1.9
3,474,464	-				+0.2
3,474,464	-				+1.0
3,474,637	+				-1.7
3,474,638	-				-2.2
3,474,720	-				+0.8
3,474,732	-				+0.6
3,474,741	-				+1.3
3,474,837	+				+2.2
3,475,117	-		HGI48_RS15445	0.48	-1.2
3,475,142	+				-0.9
3,475,144	+		HGI48_RS15445	0.54	+0.4
3,475,145	-		HGI48_RS15445	0.54	-1.4
3,475,145	-		HGI48_RS15445	0.54	+1.7
3,475,238	+		HGI48_RS15445	0.73	+1.2
3,475,614	-		HGI48_RS15450	0.11	-0.0
3,475,696	-		HGI48_RS15450	0.15	+0.4
3,475,696	-		HGI48_RS15450	0.15	-0.0
3,475,704	-		HGI48_RS15450	0.15	+0.8
3,475,708	+		HGI48_RS15450	0.15	-2.1
3,475,708	+		HGI48_RS15450	0.15	-0.6
3,475,708	+		HGI48_RS15450	0.15	+0.4
3,475,709	-		HGI48_RS15450	0.15	+0.2
3,475,803	-		HGI48_RS15450	0.20	+0.1
3,475,899	+		HGI48_RS15450	0.25	-0.6
3,475,900	-		HGI48_RS15450	0.25	-0.0
3,475,900	-		HGI48_RS15450	0.25	-1.8
3,475,998	-				+0.1
3,475,998	-		HGI48_RS15450	0.29	+0.2
3,476,016	-		HGI48_RS15450	0.30	+0.1
3,476,063	+		HGI48_RS15450	0.32	-1.5
3,476,136	-		HGI48_RS15450	0.36	+0.2
3,476,136	-		HGI48_RS15450	0.36	+0.1
3,476,141	-		HGI48_RS15450	0.36	-2.4
3,476,141	-		HGI48_RS15450	0.36	-1.4
3,476,447	+		HGI48_RS15450	0.51	-0.7
3,476,448	-		HGI48_RS15450	0.51	+1.1
3,476,448	-		HGI48_RS15450	0.51	-0.4
3,476,448	-		HGI48_RS15450	0.51	-1.7
3,476,448	-		HGI48_RS15450	0.51	-0.8
3,476,448	-		HGI48_RS15450	0.51	+0.9
3,476,504	+		HGI48_RS15450	0.54	+0.4
3,476,507	+		HGI48_RS15450	0.54	-0.6
3,476,507	+		HGI48_RS15450	0.54	-1.1
3,476,507	+		HGI48_RS15450	0.54	+0.5
3,476,508	-		HGI48_RS15450	0.54	+1.2
3,476,508	-		HGI48_RS15450	0.54	-1.2
3,476,562	-		HGI48_RS15450	0.56	-0.9
3,476,563	+		HGI48_RS15450	0.56	-1.4
3,476,564	-		HGI48_RS15450	0.56	-0.7
3,476,564	-		HGI48_RS15450	0.56	-0.7
3,476,564	-		HGI48_RS15450	0.56	+0.2
3,476,564	-		HGI48_RS15450	0.56	-0.7
3,476,564	-		HGI48_RS15450	0.56	-0.4
3,476,564	-				+3.2
3,476,564	-		HGI48_RS15450	0.56	+1.3
3,476,664	-		HGI48_RS15450	0.61	+0.6
3,476,670	+		HGI48_RS15450	0.61	+0.1
3,476,671	-		HGI48_RS15450	0.62	-0.2
3,476,696	+		HGI48_RS15450	0.63	-0.8
3,476,696	+		HGI48_RS15450	0.63	-2.5
3,476,696	+		HGI48_RS15450	0.63	-0.4
3,476,696	+		HGI48_RS15450	0.63	-1.8
3,476,696	+		HGI48_RS15450	0.63	-0.4
3,476,697	-		HGI48_RS15450	0.63	+0.6
3,476,697	-		HGI48_RS15450	0.63	+0.3
3,476,751	-		HGI48_RS15450	0.65	+0.3
3,476,775	+		HGI48_RS15450	0.67	-0.6
3,476,826	-		HGI48_RS15450	0.69	-0.7
3,476,828	+		HGI48_RS15450	0.69	+0.9
3,476,829	-				+0.1
3,476,829	-				+1.2
3,476,829	-		HGI48_RS15450	0.69	+1.1
3,476,831	+		HGI48_RS15450	0.69	+0.2
3,476,832	-		HGI48_RS15450	0.69	+0.1
3,476,832	-		HGI48_RS15450	0.69	-0.7
3,476,832	-		HGI48_RS15450	0.69	+0.6
3,476,899	+		HGI48_RS15450	0.72	-1.2
3,476,900	-		HGI48_RS15450	0.73	-0.1
3,476,900	-		HGI48_RS15450	0.73	+0.9
3,476,900	-		HGI48_RS15450	0.73	+0.4
3,476,900	-				-0.9
3,476,900	-		HGI48_RS15450	0.73	+0.6
3,476,904	-		HGI48_RS15450	0.73	+1.1
3,476,939	+		HGI48_RS15450	0.74	-0.7
3,476,949	-		HGI48_RS15450	0.75	-0.9
3,476,976	-		HGI48_RS15450	0.76	-0.3
3,476,998	+		HGI48_RS15450	0.77	-0.2
3,477,075	-		HGI48_RS15450	0.81	+0.3
3,477,092	+		HGI48_RS15450	0.82	+1.2
3,477,093	-		HGI48_RS15450	0.82	-1.9
3,477,096	-		HGI48_RS15450	0.82	-0.7
3,477,110	+		HGI48_RS15450	0.83	-0.4
3,477,111	-		HGI48_RS15450	0.83	+0.4
3,477,238	-		HGI48_RS15450	0.89	+0.1
3,477,238	-		HGI48_RS15450	0.89	-0.8
3,477,238	-		HGI48_RS15450	0.89	+0.3
3,477,238	-		HGI48_RS15450	0.89	-1.1
3,477,239	+		HGI48_RS15450	0.89	+0.3
3,477,239	+		HGI48_RS15450	0.89	-2.5
3,477,239	+		HGI48_RS15450	0.89	-0.6
3,477,249	-		HGI48_RS15450	0.89	+0.7
3,477,290	+				-3.4
3,477,290	+				+1.4
3,477,471	+				+3.3
3,477,471	+				+1.8
3,477,555	-				+0.2
3,477,680	-		HGI48_RS15455	0.14	+0.1
3,477,734	+		HGI48_RS15455	0.18	+0.3
3,477,735	-				+3.4
3,477,761	+				-0.9
3,477,787	+		HGI48_RS15455	0.21	-2.5
3,477,788	-		HGI48_RS15455	0.21	+1.5
3,477,973	+		HGI48_RS15455	0.34	+0.9
3,477,973	+		HGI48_RS15455	0.34	-1.7
3,477,973	+		HGI48_RS15455	0.34	-0.1
3,477,973	+		HGI48_RS15455	0.34	+0.1
3,477,974	-		HGI48_RS15455	0.34	-0.1
3,478,035	+		HGI48_RS15455	0.38	-0.4
3,478,035	+		HGI48_RS15455	0.38	+1.0
3,478,036	-		HGI48_RS15455	0.38	+0.4
3,478,082	+				+1.6
3,478,082	+		HGI48_RS15455	0.41	-0.4
3,478,083	-				+2.1
3,478,127	-		HGI48_RS15455	0.44	-0.4
3,478,150	+		HGI48_RS15455	0.46	-0.7
3,478,238	-		HGI48_RS15455	0.52	-0.0
3,478,253	+		HGI48_RS15455	0.53	-0.3
3,478,253	+		HGI48_RS15455	0.53	+1.0
3,478,254	-		HGI48_RS15455	0.53	+0.4
3,478,254	-		HGI48_RS15455	0.53	-2.0
3,478,254	-		HGI48_RS15455	0.53	-2.3
3,478,292	-		HGI48_RS15455	0.55	-0.4
3,478,292	-		HGI48_RS15455	0.55	-0.9
3,478,292	-		HGI48_RS15455	0.55	-0.9
3,478,301	-		HGI48_RS15455	0.56	-1.7
3,478,320	-		HGI48_RS15455	0.57	-0.5
3,478,351	+				-0.4
3,478,366	+		HGI48_RS15455	0.60	-2.2
3,478,464	+		HGI48_RS15455	0.67	-0.7