Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15020

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,378,841	+		HGI48_RS15015	0.20	+1.1
3,378,841	+		HGI48_RS15015	0.20	-0.8
3,378,842	-		HGI48_RS15015	0.20	-0.5
3,378,842	-		HGI48_RS15015	0.20	+1.2
3,378,842	-		HGI48_RS15015	0.20	-1.7
3,378,959	+		HGI48_RS15015	0.30	-0.6
3,378,960	-		HGI48_RS15015	0.30	-0.2
3,379,016	+		HGI48_RS15015	0.35	-0.4
3,379,022	+		HGI48_RS15015	0.35	+0.8
3,379,022	+		HGI48_RS15015	0.35	-0.2
3,379,022	+		HGI48_RS15015	0.35	-0.7
3,379,023	-		HGI48_RS15015	0.35	+0.9
3,379,023	-		HGI48_RS15015	0.35	-0.1
3,379,023	-		HGI48_RS15015	0.35	-1.7
3,379,273	+		HGI48_RS15015	0.56	-1.0
3,379,274	-		HGI48_RS15015	0.56	-2.2
3,379,274	-		HGI48_RS15015	0.56	-1.3
3,379,280	-				+0.6
3,379,332	+		HGI48_RS15015	0.61	-1.4
3,379,333	-		HGI48_RS15015	0.61	-1.4
3,379,334	+		HGI48_RS15015	0.61	-3.2
3,379,334	+		HGI48_RS15015	0.61	+0.8
3,379,334	+		HGI48_RS15015	0.61	-3.4
3,379,334	+		HGI48_RS15015	0.61	+0.1
3,379,334	+		HGI48_RS15015	0.61	-3.2
3,379,334	+		HGI48_RS15015	0.61	-0.7
3,379,334	+		HGI48_RS15015	0.61	-1.1
3,379,334	+		HGI48_RS15015	0.61	-0.7
3,379,334	+		HGI48_RS15015	0.61	-2.7
3,379,334	+		HGI48_RS15015	0.61	+0.2
3,379,335	-		HGI48_RS15015	0.61	+0.3
3,379,335	-		HGI48_RS15015	0.61	-0.6
3,379,335	-				+0.6
3,379,335	-		HGI48_RS15015	0.61	-2.0
3,379,335	-		HGI48_RS15015	0.61	-0.1
3,379,335	-				+0.6
3,379,338	+		HGI48_RS15015	0.61	-0.0
3,379,338	+		HGI48_RS15015	0.61	-1.0
3,379,338	+		HGI48_RS15015	0.61	-1.2
3,379,338	+		HGI48_RS15015	0.61	-0.6
3,379,339	-				+1.4
3,379,339	-		HGI48_RS15015	0.61	-2.4
3,379,339	-		HGI48_RS15015	0.61	+1.3
3,379,339	-				+0.0
3,379,339	-		HGI48_RS15015	0.61	+0.0
3,379,365	-		HGI48_RS15015	0.64	+0.2
3,379,444	+		HGI48_RS15015	0.70	-1.1
3,379,445	-		HGI48_RS15015	0.70	+0.3
3,379,517	+		HGI48_RS15015	0.76	+0.3
3,379,566	+		HGI48_RS15015	0.80	+0.2
3,379,567	-		HGI48_RS15015	0.81	-0.3
3,379,568	+		HGI48_RS15015	0.81	-0.4
3,379,568	+		HGI48_RS15015	0.81	+0.6
3,379,568	+		HGI48_RS15015	0.81	-1.7
3,379,568	+				+1.2
3,379,568	+		HGI48_RS15015	0.81	-1.4
3,379,568	+		HGI48_RS15015	0.81	-2.0
3,379,569	-		HGI48_RS15015	0.81	-0.8
3,379,569	-		HGI48_RS15015	0.81	-1.4
3,379,569	-		HGI48_RS15015	0.81	-0.4
3,379,628	+				+0.0
3,379,629	-		HGI48_RS15015	0.86	-0.4
3,379,629	-		HGI48_RS15015	0.86	-2.5
3,379,687	-				-0.1
3,379,716	+				+0.6
3,379,716	+				-2.0
3,379,720	-				+1.6
3,379,787	-				-0.7
3,379,817	+				+0.6
3,379,818	-				-0.5
3,379,846	+				-0.8
3,379,847	-				-0.4
3,379,864	+				-1.0
3,379,865	-				-0.4
3,379,865	-				-1.4
3,379,918	+		HGI48_RS15020	0.13	-0.6
3,379,918	+		HGI48_RS15020	0.13	+0.2
3,379,952	-		HGI48_RS15020	0.18	-0.1
3,379,972	+				+0.0
3,379,972	+				+2.4
3,379,972	+		HGI48_RS15020	0.20	-1.4
3,379,972	+		HGI48_RS15020	0.20	-1.5
3,379,973	-		HGI48_RS15020	0.20	+0.3
3,379,973	-		HGI48_RS15020	0.20	+0.1
3,379,973	-		HGI48_RS15020	0.20	-1.4
3,379,977	-		HGI48_RS15020	0.21	+0.6
3,380,079	-				+0.6
3,380,097	-		HGI48_RS15020	0.35	-0.5
3,380,176	+		HGI48_RS15020	0.44	-0.4
3,380,176	+		HGI48_RS15020	0.44	-0.4
3,380,177	-		HGI48_RS15020	0.44	-0.2
3,380,177	-		HGI48_RS15020	0.44	-2.2
3,380,177	-		HGI48_RS15020	0.44	-1.4
3,380,206	+		HGI48_RS15020	0.48	+0.1
3,380,206	+		HGI48_RS15020	0.48	-0.2
3,380,267	+		HGI48_RS15020	0.55	-1.7
3,380,267	+		HGI48_RS15020	0.55	+1.2
3,380,268	-		HGI48_RS15020	0.55	-0.1
3,380,268	-		HGI48_RS15020	0.55	+0.3
3,380,383	-		HGI48_RS15020	0.69	+0.0
3,380,383	-		HGI48_RS15020	0.69	+0.3
3,380,383	-		HGI48_RS15020	0.69	+0.3
3,380,443	+		HGI48_RS15020	0.76	-0.3
3,380,443	+		HGI48_RS15020	0.76	-0.0
3,380,444	-				+0.6
3,380,474	-		HGI48_RS15020	0.80	-0.7
3,380,514	+		HGI48_RS15020	0.85	+0.3
3,380,567	-				-1.5
3,380,636	+				-1.5
3,380,637	-				-0.8
3,380,651	+				-0.1
3,380,669	+				-1.0
3,380,877	-				+1.6
3,380,951	+		HGI48_RS15025	0.16	-1.0
3,380,952	-		HGI48_RS15025	0.16	-0.2
3,380,952	-		HGI48_RS15025	0.16	+0.9
3,380,952	-		HGI48_RS15025	0.16	-1.7
3,380,955	+		HGI48_RS15025	0.16	-0.1
3,380,955	+		HGI48_RS15025	0.16	-1.4
3,380,955	+		HGI48_RS15025	0.16	-3.5
3,380,955	+		HGI48_RS15025	0.16	-0.1
3,380,956	-		HGI48_RS15025	0.16	+0.3
3,380,956	-		HGI48_RS15025	0.16	-1.0
3,380,956	-		HGI48_RS15025	0.16	+0.5
3,380,956	-		HGI48_RS15025	0.16	-1.1
3,380,971	-		HGI48_RS15025	0.17	-0.8
3,381,014	+		HGI48_RS15025	0.21	-1.7
3,381,014	+		HGI48_RS15025	0.21	-0.7
3,381,014	+		HGI48_RS15025	0.21	+0.1
3,381,015	-		HGI48_RS15025	0.21	-0.7
3,381,015	-		HGI48_RS15025	0.21	-0.4
3,381,015	-		HGI48_RS15025	0.21	+0.9
3,381,110	-		HGI48_RS15025	0.28	-1.7
3,381,110	-		HGI48_RS15025	0.28	-0.4
3,381,349	-		HGI48_RS15025	0.46	+0.4
3,381,400	-		HGI48_RS15025	0.50	-1.7
3,381,400	-		HGI48_RS15025	0.50	-0.1
3,381,546	-		HGI48_RS15025	0.61	+1.9
3,381,554	+		HGI48_RS15025	0.62	-1.2
3,381,554	+		HGI48_RS15025	0.62	-0.8
3,381,554	+		HGI48_RS15025	0.62	-0.3
3,381,554	+		HGI48_RS15025	0.62	-1.7
3,381,554	+		HGI48_RS15025	0.62	+0.0
3,381,555	-		HGI48_RS15025	0.62	+0.0
3,381,555	-		HGI48_RS15025	0.62	+0.1
3,381,555	-				+2.4
3,381,631	-		HGI48_RS15025	0.68	+0.1
3,381,631	-		HGI48_RS15025	0.68	-0.4