Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13365

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,927,159	+		HGI48_RS13360	0.45	-1.3
2,927,252	-		HGI48_RS13360	0.53	+1.0
2,927,252	-		HGI48_RS13360	0.53	+0.1
2,927,255	+		HGI48_RS13360	0.54	-0.1
2,927,256	-		HGI48_RS13360	0.54	-0.8
2,927,256	-		HGI48_RS13360	0.54	+0.0
2,927,256	-		HGI48_RS13360	0.54	-0.8
2,927,308	-		HGI48_RS13360	0.59	-0.5
2,927,374	+		HGI48_RS13360	0.65	-1.0
2,927,447	-		HGI48_RS13360	0.71	+0.2
2,927,447	-		HGI48_RS13360	0.71	+0.7
2,927,596	+		HGI48_RS13360	0.85	+0.4
2,927,596	+		HGI48_RS13360	0.85	-2.9
2,927,596	+		HGI48_RS13360	0.85	+0.3
2,927,596	+		HGI48_RS13360	0.85	+0.0
2,927,597	-		HGI48_RS13360	0.85	+0.2
2,927,597	-		HGI48_RS13360	0.85	+1.3
2,927,606	+		HGI48_RS13360	0.86	-1.0
2,927,647	+				+1.0
2,927,664	+				-1.9
2,927,664	+				-0.8
2,927,664	+				+0.4
2,927,664	+				-1.6
2,927,665	-				+0.6
2,927,665	-				-1.6
2,927,665	-				-0.3
2,927,665	-				-1.6
2,927,665	-				+0.4
2,927,665	-				-1.6
2,927,665	-				+0.2
2,927,668	+				-0.7
2,927,668	+				+0.1
2,927,669	-				-0.6
2,927,675	+				+0.6
2,927,676	-				+0.2
2,927,676	-				-2.6
2,927,742	-				-0.3
2,927,772	+				-0.8
2,927,897	-				-2.4
2,928,050	+				+0.3
2,928,052	+				+2.5
2,928,052	+				-0.7
2,928,052	+				+1.0
2,928,052	+				+0.7
2,928,052	+				+0.4
2,928,052	+				-0.2
2,928,053	-				-1.3
2,928,058	+				+0.0
2,928,058	+				+0.7
2,928,059	-				+1.4
2,928,103	-				+0.2
2,928,170	+				-0.3
2,928,170	+				-1.9
2,928,170	+				-0.6
2,928,171	-				-2.4
2,928,194	+		HGI48_RS13365	0.11	-1.4
2,928,212	+		HGI48_RS13365	0.12	+0.9
2,928,212	+		HGI48_RS13365	0.12	+0.6
2,928,215	+		HGI48_RS13365	0.13	-0.6
2,928,215	+		HGI48_RS13365	0.13	-1.2
2,928,215	+		HGI48_RS13365	0.13	+1.3
2,928,215	+		HGI48_RS13365	0.13	+0.5
2,928,215	+		HGI48_RS13365	0.13	-1.0
2,928,215	+		HGI48_RS13365	0.13	-1.6
2,928,216	-		HGI48_RS13365	0.13	+0.4
2,928,216	-		HGI48_RS13365	0.13	-1.2
2,928,216	-		HGI48_RS13365	0.13	-1.4
2,928,234	+		HGI48_RS13365	0.14	+0.4
2,928,258	+		HGI48_RS13365	0.16	+0.4
2,928,259	-		HGI48_RS13365	0.16	-0.3
2,928,259	-		HGI48_RS13365	0.16	+1.0
2,928,269	+		HGI48_RS13365	0.17	-2.3
2,928,269	+		HGI48_RS13365	0.17	-0.1
2,928,269	+		HGI48_RS13365	0.17	-1.3
2,928,270	-		HGI48_RS13365	0.17	+0.3
2,928,270	-		HGI48_RS13365	0.17	-1.3
2,928,270	-		HGI48_RS13365	0.17	-0.1
2,928,321	-		HGI48_RS13365	0.22	+0.1
2,928,321	-		HGI48_RS13365	0.22	+0.4
2,928,446	+		HGI48_RS13365	0.33	+0.4
2,928,453	-				+0.4
2,928,486	+		HGI48_RS13365	0.36	-0.3
2,928,487	-		HGI48_RS13365	0.37	+0.4
2,928,487	-		HGI48_RS13365	0.37	+0.9
2,928,542	+		HGI48_RS13365	0.41	+0.4
2,928,542	+		HGI48_RS13365	0.41	-0.9
2,928,542	+		HGI48_RS13365	0.41	+0.4
2,928,542	+		HGI48_RS13365	0.41	-0.2
2,928,543	-		HGI48_RS13365	0.41	-2.4
2,928,543	-		HGI48_RS13365	0.41	-1.4
2,928,543	-		HGI48_RS13365	0.41	+0.8
2,928,568	-		HGI48_RS13365	0.44	-0.6
2,928,572	+		HGI48_RS13365	0.44	-1.4
2,928,572	+		HGI48_RS13365	0.44	+0.9
2,928,572	+		HGI48_RS13365	0.44	-2.3
2,928,572	+		HGI48_RS13365	0.44	+0.8
2,928,572	+				-0.2
2,928,573	-		HGI48_RS13365	0.44	-1.7
2,928,723	+		HGI48_RS13365	0.57	-0.3
2,928,788	+		HGI48_RS13365	0.63	-0.9
2,928,788	+				+1.4
2,928,789	-		HGI48_RS13365	0.63	-0.9
2,928,906	+		HGI48_RS13365	0.73	-2.8
2,928,907	-		HGI48_RS13365	0.74	+0.4
2,928,907	-		HGI48_RS13365	0.74	+0.7
2,928,921	+		HGI48_RS13365	0.75	+0.4
2,928,921	+		HGI48_RS13365	0.75	+2.4
2,928,921	+		HGI48_RS13365	0.75	+0.9
2,928,921	+		HGI48_RS13365	0.75	+0.9
2,928,921	+		HGI48_RS13365	0.75	-0.1
2,928,922	-		HGI48_RS13365	0.75	+0.3
2,929,056	+		HGI48_RS13365	0.87	-1.0
2,929,056	+		HGI48_RS13365	0.87	-1.2
2,929,056	+		HGI48_RS13365	0.87	+0.0
2,929,057	-				-0.2
2,929,057	-		HGI48_RS13365	0.87	-0.8
2,929,147	-				+0.1
2,929,246	+				-0.6
2,929,247	-				+0.2
2,929,247	-				+0.9
2,929,298	+				-0.6
2,929,298	+				+0.1
2,929,298	+				+0.1
2,929,375	-		HGI48_RS13370	0.15	-0.2
2,929,439	+		HGI48_RS13370	0.20	-1.2
2,929,439	+				+0.8
2,929,440	-		HGI48_RS13370	0.20	-1.9
2,929,440	-		HGI48_RS13370	0.20	-0.3
2,929,453	+				+0.8
2,929,453	+		HGI48_RS13370	0.21	+1.0
2,929,453	+		HGI48_RS13370	0.21	-2.2
2,929,453	+		HGI48_RS13370	0.21	+0.7
2,929,453	+		HGI48_RS13370	0.21	-1.4
2,929,453	+		HGI48_RS13370	0.21	-1.1
2,929,453	+		HGI48_RS13370	0.21	-0.9
2,929,454	-		HGI48_RS13370	0.21	+0.1
2,929,454	-		HGI48_RS13370	0.21	-0.6
2,929,454	-		HGI48_RS13370	0.21	+0.0
2,929,454	-		HGI48_RS13370	0.21	+0.3
2,929,454	-		HGI48_RS13370	0.21	-0.3
2,929,454	-		HGI48_RS13370	0.21	-0.6
2,929,519	+		HGI48_RS13370	0.27	+0.1
2,929,541	+		HGI48_RS13370	0.29	+0.7
2,929,542	-		HGI48_RS13370	0.29	-0.7
2,929,564	+		HGI48_RS13370	0.31	-0.6
2,929,564	+		HGI48_RS13370	0.31	+0.7
2,929,565	-		HGI48_RS13370	0.31	-1.5
2,929,596	+		HGI48_RS13370	0.33	-1.8
2,929,596	+		HGI48_RS13370	0.33	-1.5
2,929,597	-		HGI48_RS13370	0.33	-0.3
2,929,653	+		HGI48_RS13370	0.38	+0.7
2,929,654	-		HGI48_RS13370	0.38	-1.0
2,929,654	-		HGI48_RS13370	0.38	-1.2
2,929,654	-		HGI48_RS13370	0.38	-0.5
2,929,673	+		HGI48_RS13370	0.40	+0.3
2,929,674	-		HGI48_RS13370	0.40	+2.2
2,929,674	-		HGI48_RS13370	0.40	+1.7
2,929,768	+		HGI48_RS13370	0.48	-0.8
2,929,768	+				+1.0
2,929,769	-				-0.2
2,929,769	-		HGI48_RS13370	0.48	+0.9
2,929,805	+		HGI48_RS13370	0.51	+1.7
2,929,854	+		HGI48_RS13370	0.55	+0.4
2,929,854	+		HGI48_RS13370	0.55	-0.4
2,929,854	+		HGI48_RS13370	0.55	-1.0
2,929,898	-		HGI48_RS13370	0.59	-1.3
2,929,951	+		HGI48_RS13370	0.63	+0.2
2,929,952	-		HGI48_RS13370	0.63	-1.6
2,929,952	-		HGI48_RS13370	0.63	-0.3
2,930,039	+		HGI48_RS13370	0.71	+1.0
2,930,039	+		HGI48_RS13370	0.71	+1.4
2,930,040	-		HGI48_RS13370	0.71	-0.9
2,930,040	-		HGI48_RS13370	0.71	-1.6
2,930,050	+		HGI48_RS13370	0.72	-0.1
2,930,051	-		HGI48_RS13370	0.72	-0.8
2,930,115	-		HGI48_RS13370	0.77	-0.8
2,930,178	-		HGI48_RS13370	0.82	-1.7
2,930,184	-		HGI48_RS13370	0.83	-1.6