Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,784,021	-		HGI48_RS12745	0.48	-0.5
2,784,047	+		HGI48_RS12745	0.56	+0.6
2,784,047	+		HGI48_RS12745	0.56	-0.7
2,784,047	+		HGI48_RS12745	0.56	+0.1
2,784,048	-		HGI48_RS12745	0.57	-0.4
2,784,074	-		HGI48_RS12745	0.65	+0.0
2,784,149	+		HGI48_RS12745	0.87	+0.6
2,784,170	+				+0.5
2,784,289	+				+0.1
2,784,290	-				+0.5
2,784,308	-				-1.9
2,784,316	-				-0.6
2,784,343	+				+0.7
2,784,378	-				-0.8
2,784,401	+				+0.4
2,784,457	+				+1.0
2,784,458	-				-0.1
2,784,467	+				-3.2
2,784,470	+				+1.0
2,784,470	+				-0.4
2,784,470	+				-1.2
2,784,471	-				+0.9
2,784,471	-				+1.4
2,784,483	+				+0.4
2,784,483	+				-2.2
2,784,484	-				-1.9
2,784,502	+		HGI48_RS12750	0.13	-2.2
2,784,502	+				+0.8
2,784,502	+		HGI48_RS12750	0.13	+0.1
2,784,502	+		HGI48_RS12750	0.13	-1.6
2,784,503	+		HGI48_RS12750	0.14	-0.9
2,784,503	-		HGI48_RS12750	0.14	+1.1
2,784,503	-				+0.4
2,784,503	-		HGI48_RS12750	0.14	-0.5
2,784,503	-		HGI48_RS12750	0.14	+0.2
2,784,503	-		HGI48_RS12750	0.14	+0.4
2,784,503	-		HGI48_RS12750	0.14	-0.1
2,784,503	-		HGI48_RS12750	0.14	-0.4
2,784,503	-		HGI48_RS12750	0.14	-1.4
2,784,556	-		HGI48_RS12750	0.29	+0.2
2,784,559	+		HGI48_RS12750	0.30	+0.9
2,784,560	-		HGI48_RS12750	0.30	-1.2
2,784,560	-		HGI48_RS12750	0.30	+0.1
2,784,604	+		HGI48_RS12750	0.43	+0.2
2,784,604	+		HGI48_RS12750	0.43	-0.2
2,784,605	-		HGI48_RS12750	0.43	-1.9
2,784,605	-		HGI48_RS12750	0.43	-0.8
2,784,605	-				+1.7
2,784,678	+		HGI48_RS12750	0.64	-2.2
2,784,679	-		HGI48_RS12750	0.64	-0.6
2,784,736	+		HGI48_RS12750	0.80	-0.7
2,784,820	+				+0.4
2,784,822	+				-1.6
2,784,831	-				-1.2
2,784,841	+				-0.1
2,784,842	-				+0.2
2,784,842	-				-0.5
2,784,843	+				-0.0
2,784,843	+				+0.4
2,784,844	-				+0.9
2,784,844	-				-0.6
2,784,844	-				-0.3
2,784,844	-				+0.6
2,784,851	-				-1.2
2,784,851	-				+0.1
2,784,852	+				+1.2
2,784,852	+				-0.8
2,784,852	+				-1.4
2,784,852	+				-2.4
2,784,853	-				+0.4
2,784,853	-				-2.4
2,784,853	-				-1.2
2,784,853	-				-2.2
2,784,853	-				-0.5
2,784,853	-				-0.0
2,784,921	-				-0.2
2,784,966	+				+1.1
2,784,967	-				+0.4
2,784,967	-				-0.4
2,784,967	-				+2.5
2,784,971	-				-0.2
2,785,006	+		HGI48_RS12755	0.24	-2.2
2,785,006	+		HGI48_RS12755	0.24	+1.2
2,785,006	+		HGI48_RS12755	0.24	-0.4
2,785,007	-		HGI48_RS12755	0.24	+0.6
2,785,008	+				+0.8
2,785,008	+		HGI48_RS12755	0.24	+1.0
2,785,008	+		HGI48_RS12755	0.24	-1.9
2,785,008	+		HGI48_RS12755	0.24	-1.8
2,785,009	-		HGI48_RS12755	0.25	-0.2
2,785,009	-				-0.2
2,785,009	-		HGI48_RS12755	0.25	+1.0
2,785,009	-		HGI48_RS12755	0.25	-0.8
2,785,009	-		HGI48_RS12755	0.25	+0.7
2,785,033	-		HGI48_RS12755	0.34	-0.6
2,785,033	-		HGI48_RS12755	0.34	-0.1
2,785,054	+		HGI48_RS12755	0.42	-0.1
2,785,055	-		HGI48_RS12755	0.43	-1.2
2,785,055	-		HGI48_RS12755	0.43	+1.7
2,785,065	+		HGI48_RS12755	0.47	+0.6
2,785,065	+		HGI48_RS12755	0.47	-1.9
2,785,065	+		HGI48_RS12755	0.47	-1.4
2,785,065	+		HGI48_RS12755	0.47	+0.8
2,785,066	-				+1.8
2,785,066	-		HGI48_RS12755	0.47	-0.3
2,785,066	-		HGI48_RS12755	0.47	-1.0
2,785,066	-		HGI48_RS12755	0.47	-1.4
2,785,096	+				-0.6
2,785,158	-		HGI48_RS12755	0.83	-0.3
2,785,158	-		HGI48_RS12755	0.83	+0.1
2,785,182	+				+0.1
2,785,182	+				+0.4
2,785,183	-				-1.6
2,785,183	-				+0.8
2,785,196	+				+2.0
2,785,196	+				-0.1
2,785,196	+				-0.8
2,785,197	-				-0.9
2,785,197	-				+1.1
2,785,469	-				-0.2
2,785,469	-				+0.1
2,785,474	+				+0.0
2,785,474	+				-0.6
2,785,474	+				+0.8
2,785,474	+				-1.8
2,785,475	-				-0.2
2,785,475	-				-1.2
2,785,475	-				+1.2
2,785,514	+				+0.6
2,785,514	+				+0.4
2,785,568	+				-1.2
2,785,568	+				-1.4
2,785,568	+				+1.7
2,785,568	+				-1.9
2,785,569	-				-1.6
2,785,569	-				-0.0
2,785,569	-				-0.7
2,785,569	-				-0.4
2,785,580	+				+0.4
2,785,581	-				+0.4
2,785,581	-				-1.0
2,785,595	+				+0.7
2,785,596	-				+0.0
2,785,596	-				+0.4
2,785,650	+				-0.0
2,785,651	-				+1.0
2,785,651	-				-0.6
2,785,654	+				+0.4
2,785,655	-				-0.5
2,785,655	-				+1.0
2,785,655	-				+0.1
2,785,775	+		HGI48_RS12765	0.16	+4.2
2,785,775	+		HGI48_RS12765	0.16	-1.1
2,785,776	-		HGI48_RS12765	0.16	-1.4
2,785,789	-		HGI48_RS12765	0.17	-1.6
2,785,812	+		HGI48_RS12765	0.20	+0.2
2,785,813	-		HGI48_RS12765	0.20	-1.0
2,785,846	-				+2.0
2,785,909	-		HGI48_RS12765	0.31	-1.9
2,785,927	-		HGI48_RS12765	0.34	-1.6
2,785,927	-		HGI48_RS12765	0.34	-3.2
2,785,935	+		HGI48_RS12765	0.35	+0.7
2,785,935	+		HGI48_RS12765	0.35	+1.4
2,785,980	+		HGI48_RS12765	0.40	-0.9
2,785,980	+		HGI48_RS12765	0.40	+0.1
2,785,980	+		HGI48_RS12765	0.40	-1.4
2,785,980	+				-1.2
2,785,982	+		HGI48_RS12765	0.40	-0.2
2,785,982	+		HGI48_RS12765	0.40	+0.1
2,785,982	+		HGI48_RS12765	0.40	+1.0
2,785,982	+				-0.2
2,785,983	-		HGI48_RS12765	0.40	-2.4
2,785,983	-		HGI48_RS12765	0.40	-0.6
2,785,983	-		HGI48_RS12765	0.40	-0.8
2,785,983	-		HGI48_RS12765	0.40	+0.6
2,785,983	-		HGI48_RS12765	0.40	+1.2
2,786,093	-		HGI48_RS12765	0.53	+0.6
2,786,158	-		HGI48_RS12765	0.61	-0.1