Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,095,430	+				+0.4
2,095,431	-				-1.4
2,095,446	+				-1.9
2,095,748	+				+0.8
2,095,755	-				+0.4
2,095,766	+				-0.3
2,095,767	-				-2.4
2,095,767	-				-0.9
2,095,767	-				-1.2
2,095,782	+				-1.6
2,095,783	-				-2.3
2,095,786	+				+1.1
2,095,786	+				+1.1
2,095,786	+				-0.6
2,095,787	-				-1.4
2,095,787	-				-1.2
2,095,837	+				+1.4
2,095,904	+				-0.6
2,095,905	-				+0.9
2,095,905	-				-0.6
2,095,935	+				+0.0
2,095,935	+				-0.4
2,095,936	-				-1.0
2,095,936	-				+0.1
2,095,936	-				-0.1
2,095,940	-				-2.8
2,095,999	+				-1.6
2,096,082	+				-0.0
2,096,136	-				-0.8
2,096,165	+				+0.2
2,096,169	-				-0.2
2,096,169	-				+0.4
2,096,169	-				+1.1
2,096,183	+				-1.2
2,096,183	+				+0.2
2,096,265	-				+1.2
2,096,265	-				+0.8
2,096,320	+		HGI48_RS09705	0.12	+1.2
2,096,357	+		HGI48_RS09705	0.13	+0.1
2,096,391	+		HGI48_RS09705	0.15	+1.2
2,096,392	-		HGI48_RS09705	0.15	-1.9
2,096,392	-		HGI48_RS09705	0.15	-1.2
2,096,397	+		HGI48_RS09705	0.16	-0.0
2,096,397	+		HGI48_RS09705	0.16	-0.8
2,096,398	-				+1.7
2,096,398	-		HGI48_RS09705	0.16	-0.4
2,096,398	-		HGI48_RS09705	0.16	-2.1
2,096,398	-		HGI48_RS09705	0.16	-0.8
2,096,437	+		HGI48_RS09705	0.18	+0.2
2,096,438	-		HGI48_RS09705	0.18	+0.5
2,096,459	+		HGI48_RS09705	0.19	-0.2
2,096,586	+		HGI48_RS09705	0.25	+0.4
2,096,586	+		HGI48_RS09705	0.25	+0.2
2,096,586	+		HGI48_RS09705	0.25	+0.4
2,096,666	+		HGI48_RS09705	0.29	-1.9
2,096,666	+		HGI48_RS09705	0.29	+0.1
2,096,667	-		HGI48_RS09705	0.29	-1.2
2,096,744	+		HGI48_RS09705	0.33	+0.8
2,096,745	-		HGI48_RS09705	0.33	-1.6
2,096,784	+		HGI48_RS09705	0.36	-0.9
2,096,785	-		HGI48_RS09705	0.36	-1.0
2,096,785	-		HGI48_RS09705	0.36	+0.8
2,096,785	-		HGI48_RS09705	0.36	-0.5
2,096,786	+		HGI48_RS09705	0.36	-1.3
2,096,787	-		HGI48_RS09705	0.36	-3.4
2,096,790	-		HGI48_RS09705	0.36	-0.0
2,096,790	-		HGI48_RS09705	0.36	+1.0
2,096,820	+		HGI48_RS09705	0.37	-2.2
2,096,820	+		HGI48_RS09705	0.37	+0.2
2,096,821	-				+1.6
2,096,823	+		HGI48_RS09705	0.38	+1.7
2,096,823	+		HGI48_RS09705	0.38	+0.7
2,096,824	-		HGI48_RS09705	0.38	+0.4
2,096,825	+		HGI48_RS09705	0.38	+0.9
2,096,826	-		HGI48_RS09705	0.38	-2.4
2,096,831	+		HGI48_RS09705	0.38	-2.6
2,096,878	+				-1.2
2,096,878	+		HGI48_RS09705	0.40	-0.8
2,096,879	-		HGI48_RS09705	0.40	+0.4
2,096,885	+		HGI48_RS09705	0.41	-0.5
2,096,885	+		HGI48_RS09705	0.41	-0.6
2,096,888	+		HGI48_RS09705	0.41	+0.6
2,096,889	-		HGI48_RS09705	0.41	-0.8
2,096,889	-				+0.4
2,096,947	+		HGI48_RS09705	0.44	+0.0
2,096,966	+		HGI48_RS09705	0.45	-2.2
2,096,967	-		HGI48_RS09705	0.45	+0.6
2,096,967	-		HGI48_RS09705	0.45	-0.0
2,096,967	-		HGI48_RS09705	0.45	+0.4
2,097,004	+		HGI48_RS09705	0.47	-0.4
2,097,071	-		HGI48_RS09705	0.50	-0.0
2,097,206	+		HGI48_RS09705	0.57	-2.2
2,097,206	+		HGI48_RS09705	0.57	+0.1
2,097,207	-		HGI48_RS09705	0.57	-0.3
2,097,253	+				+1.6
2,097,254	-		HGI48_RS09705	0.60	-0.1
2,097,275	+		HGI48_RS09705	0.61	-0.4
2,097,276	-		HGI48_RS09705	0.61	-0.2
2,097,279	+		HGI48_RS09705	0.61	-0.1
2,097,324	-		HGI48_RS09705	0.63	-0.3
2,097,341	+		HGI48_RS09705	0.64	-0.1
2,097,342	-		HGI48_RS09705	0.64	-1.1
2,097,368	+		HGI48_RS09705	0.66	-1.0
2,097,369	+		HGI48_RS09705	0.66	-0.2
2,097,371	+		HGI48_RS09705	0.66	-1.1
2,097,371	+		HGI48_RS09705	0.66	-0.0
2,097,371	+		HGI48_RS09705	0.66	-0.8
2,097,371	+		HGI48_RS09705	0.66	+0.4
2,097,371	+		HGI48_RS09705	0.66	+0.4
2,097,372	-		HGI48_RS09705	0.66	-1.9
2,097,372	-		HGI48_RS09705	0.66	+0.0
2,097,462	+		HGI48_RS09705	0.71	+0.2
2,097,462	+		HGI48_RS09705	0.71	-1.6
2,097,462	+		HGI48_RS09705	0.71	-0.2
2,097,463	-		HGI48_RS09705	0.71	+0.7
2,097,463	-		HGI48_RS09705	0.71	-1.2
2,097,463	-				+2.2
2,097,464	+		HGI48_RS09705	0.71	+0.4
2,097,524	+				+2.4
2,097,525	-		HGI48_RS09705	0.74	-0.6
2,097,573	+		HGI48_RS09705	0.76	-0.6
2,097,586	+		HGI48_RS09705	0.77	-0.6
2,097,587	-		HGI48_RS09705	0.77	-0.8
2,097,587	-		HGI48_RS09705	0.77	-1.6
2,097,587	-		HGI48_RS09705	0.77	-2.4
2,097,599	+		HGI48_RS09705	0.78	+0.8
2,097,599	+		HGI48_RS09705	0.78	-1.0
2,097,599	+		HGI48_RS09705	0.78	-0.4
2,097,668	+		HGI48_RS09705	0.81	-0.0
2,097,759	-		HGI48_RS09705	0.86	-0.9
2,097,759	-		HGI48_RS09705	0.86	-2.2
2,097,759	-		HGI48_RS09705	0.86	-0.2
2,097,828	+		HGI48_RS09705	0.89	+0.1
2,097,829	-		HGI48_RS09705	0.90	-0.2
2,097,829	-				+0.4
2,097,927	+				-0.0
2,097,928	-				-1.6
2,097,928	-				-2.4
2,097,942	-				+0.4
2,097,942	-				+0.4
2,097,947	+				-2.4
2,097,980	-				+0.1
2,098,029	+				+0.4
2,098,029	+				+0.9
2,098,030	-				+0.4
2,098,030	-				+0.6
2,098,057	+				-0.2
2,098,058	-				+1.2
2,098,084	+				-1.2
2,098,085	-				-0.6
2,098,088	+				+0.9
2,098,089	-				-2.2
2,098,089	-				+0.3
2,098,089	-				-0.2
2,098,089	-				-0.2
2,098,102	-				+0.6
2,098,119	-				-1.3
2,098,185	+				+0.5
2,098,202	+				+1.2
2,098,240	+		HGI48_RS09710	0.12	+0.2
2,098,244	+		HGI48_RS09710	0.12	-0.9
2,098,245	-		HGI48_RS09710	0.12	-0.2
2,098,245	-		HGI48_RS09710	0.12	+2.3
2,098,258	+		HGI48_RS09710	0.14	-0.4
2,098,258	+		HGI48_RS09710	0.14	+0.1
2,098,259	-		HGI48_RS09710	0.15	-0.9
2,098,261	-		HGI48_RS09710	0.15	-0.0
2,098,261	-		HGI48_RS09710	0.15	+0.7
2,098,261	-		HGI48_RS09710	0.15	-0.6
2,098,345	+		HGI48_RS09710	0.28	-0.5
2,098,346	-		HGI48_RS09710	0.28	+0.4
2,098,346	-				+1.1
2,098,362	+		HGI48_RS09710	0.31	+0.1
2,098,363	-		HGI48_RS09710	0.31	-0.9
2,098,425	+		HGI48_RS09710	0.41	-1.6
2,098,437	+		HGI48_RS09710	0.43	+1.1
2,098,438	-		HGI48_RS09710	0.43	-0.8
2,098,441	+		HGI48_RS09710	0.43	+0.4
2,098,442	-		HGI48_RS09710	0.43	+0.5
2,098,442	-		HGI48_RS09710	0.43	-1.4
2,098,442	-		HGI48_RS09710	0.43	-0.4
2,098,443	+		HGI48_RS09710	0.44	+0.1
2,098,444	-		HGI48_RS09710	0.44	+0.5
2,098,453	+		HGI48_RS09710	0.45	-2.6
2,098,454	-		HGI48_RS09710	0.45	-1.6
2,098,454	-		HGI48_RS09710	0.45	-0.6
2,098,495	+		HGI48_RS09710	0.52	-0.5
2,098,495	+		HGI48_RS09710	0.52	+3.3
2,098,496	-		HGI48_RS09710	0.52	+1.5
2,098,496	-		HGI48_RS09710	0.52	+1.4
2,098,496	-				-0.6
2,098,496	-				-0.2
2,098,496	-		HGI48_RS09710	0.52	+0.6
2,098,497	+		HGI48_RS09710	0.52	+0.2
2,098,497	+		HGI48_RS09710	0.52	+0.4
2,098,498	-		HGI48_RS09710	0.52	-0.6
2,098,551	+		HGI48_RS09710	0.61	+0.2
2,098,551	+				+0.8
2,098,551	+		HGI48_RS09710	0.61	+0.1
2,098,551	+		HGI48_RS09710	0.61	-0.8
2,098,552	-		HGI48_RS09710	0.61	-0.3
2,098,552	-		HGI48_RS09710	0.61	-0.2
2,098,552	-		HGI48_RS09710	0.61	+0.5
2,098,606	+		HGI48_RS09710	0.69	-0.8
2,098,637	+		HGI48_RS09710	0.74	-2.4
2,098,637	+		HGI48_RS09710	0.74	+0.1
2,098,638	-		HGI48_RS09710	0.74	-0.4
2,098,653	+		HGI48_RS09710	0.77	+1.3
2,098,654	-		HGI48_RS09710	0.77	+2.1
2,098,672	+				+1.4
2,098,673	-		HGI48_RS09710	0.80	-0.9
2,098,763	+				-0.1
2,098,763	+				-0.5
2,098,764	-				-1.6
2,098,764	-				+0.1
2,098,764	-				+0.2
2,098,779	+				+0.0
2,098,780	-				-0.7
2,098,801	+				-1.2
2,098,912	+				+0.9
2,098,913	-				+1.4