Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09175

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,968,028	+		HGI48_RS09170	0.45	-0.3
1,968,029	-		HGI48_RS09170	0.45	-0.3
1,968,029	-		HGI48_RS09170	0.45	-1.3
1,968,029	-		HGI48_RS09170	0.45	-0.0
1,968,052	+		HGI48_RS09170	0.46	-1.1
1,968,210	+		HGI48_RS09170	0.55	+0.1
1,968,210	+		HGI48_RS09170	0.55	+1.0
1,968,211	-		HGI48_RS09170	0.56	+0.2
1,968,211	-				-0.2
1,968,211	-		HGI48_RS09170	0.56	+0.4
1,968,211	-		HGI48_RS09170	0.56	-0.6
1,968,218	-		HGI48_RS09170	0.56	+0.1
1,968,218	-		HGI48_RS09170	0.56	-0.0
1,968,240	+		HGI48_RS09170	0.57	-2.2
1,968,241	-		HGI48_RS09170	0.57	-0.2
1,968,396	+		HGI48_RS09170	0.66	+0.4
1,968,396	+		HGI48_RS09170	0.66	+0.1
1,968,396	+		HGI48_RS09170	0.66	+0.7
1,968,396	+		HGI48_RS09170	0.66	-0.6
1,968,396	+		HGI48_RS09170	0.66	-0.1
1,968,396	+		HGI48_RS09170	0.66	-2.2
1,968,396	+		HGI48_RS09170	0.66	-0.4
1,968,396	+				+0.4
1,968,396	+		HGI48_RS09170	0.66	+0.1
1,968,397	-		HGI48_RS09170	0.66	-1.4
1,968,397	-		HGI48_RS09170	0.66	-0.8
1,968,397	-				-0.2
1,968,397	-		HGI48_RS09170	0.66	-0.9
1,968,402	+		HGI48_RS09170	0.67	-0.1
1,968,402	+		HGI48_RS09170	0.67	+1.6
1,968,403	-		HGI48_RS09170	0.67	-0.6
1,968,403	-		HGI48_RS09170	0.67	-1.4
1,968,478	-		HGI48_RS09170	0.71	-1.6
1,968,541	+		HGI48_RS09170	0.75	-2.1
1,968,541	+		HGI48_RS09170	0.75	-1.2
1,968,596	+		HGI48_RS09170	0.78	-0.1
1,968,596	+		HGI48_RS09170	0.78	-1.5
1,968,596	+		HGI48_RS09170	0.78	-0.8
1,968,596	+		HGI48_RS09170	0.78	-0.9
1,968,596	+		HGI48_RS09170	0.78	-3.1
1,968,596	+				+1.4
1,968,597	-		HGI48_RS09170	0.78	+0.1
1,968,597	-		HGI48_RS09170	0.78	-0.6
1,968,597	-		HGI48_RS09170	0.78	+0.9
1,968,597	-		HGI48_RS09170	0.78	+0.1
1,968,597	-		HGI48_RS09170	0.78	-0.1
1,968,597	-		HGI48_RS09170	0.78	-0.2
1,968,597	-		HGI48_RS09170	0.78	-0.7
1,968,663	-		HGI48_RS09170	0.82	-1.0
1,968,681	+		HGI48_RS09170	0.83	-0.0
1,968,681	+		HGI48_RS09170	0.83	-0.9
1,968,682	-		HGI48_RS09170	0.83	-2.2
1,968,682	-		HGI48_RS09170	0.83	-0.4
1,968,687	+				+3.0
1,968,688	-		HGI48_RS09170	0.84	-0.9
1,968,708	+		HGI48_RS09170	0.85	+0.1
1,968,729	+		HGI48_RS09170	0.86	-0.3
1,968,730	-				-0.2
1,968,730	-				-0.6
1,968,856	+				-0.0
1,968,856	+				+0.1
1,968,856	+				-1.6
1,968,856	+				-0.9
1,968,856	+				+1.7
1,968,856	+				-0.9
1,968,857	-				-0.3
1,968,857	-				+0.6
1,968,857	-				-2.5
1,968,857	-				+0.1
1,968,945	+				-1.2
1,969,049	-				-0.6
1,969,112	+		HGI48_RS09175	0.16	-0.3
1,969,113	-		HGI48_RS09175	0.16	+0.4
1,969,113	-		HGI48_RS09175	0.16	-0.9
1,969,113	-		HGI48_RS09175	0.16	-1.6
1,969,113	-		HGI48_RS09175	0.16	+0.6
1,969,138	+		HGI48_RS09175	0.20	+0.3
1,969,139	-		HGI48_RS09175	0.20	+0.3
1,969,221	+		HGI48_RS09175	0.31	-1.6
1,969,222	-				+2.5
1,969,222	-		HGI48_RS09175	0.31	-0.4
1,969,284	-		HGI48_RS09175	0.40	+0.0
1,969,284	-		HGI48_RS09175	0.40	-1.6
1,969,284	-		HGI48_RS09175	0.40	+1.1
1,969,285	+		HGI48_RS09175	0.40	-1.9
1,969,286	-		HGI48_RS09175	0.40	+0.4
1,969,286	-		HGI48_RS09175	0.40	-0.6
1,969,424	-		HGI48_RS09175	0.59	-1.2
1,969,445	-				-1.2
1,969,454	-				-0.2
1,969,454	-		HGI48_RS09175	0.63	+0.4
1,969,457	+		HGI48_RS09175	0.63	-0.7
1,969,457	+		HGI48_RS09175	0.63	+0.9
1,969,457	+		HGI48_RS09175	0.63	+0.7
1,969,457	+		HGI48_RS09175	0.63	-0.6
1,969,458	-		HGI48_RS09175	0.63	+1.0
1,969,458	-		HGI48_RS09175	0.63	+0.1
1,969,458	-		HGI48_RS09175	0.63	-1.0
1,969,458	-		HGI48_RS09175	0.63	+0.1
1,969,458	-		HGI48_RS09175	0.63	-0.9
1,969,458	-		HGI48_RS09175	0.63	+0.4
1,969,563	-		HGI48_RS09175	0.78	-0.6
1,969,563	-		HGI48_RS09175	0.78	-0.0
1,969,599	+		HGI48_RS09175	0.83	+0.2
1,969,599	+		HGI48_RS09175	0.83	+0.6
1,969,599	+		HGI48_RS09175	0.83	-0.0
1,969,599	+		HGI48_RS09175	0.83	-0.9
1,969,599	+		HGI48_RS09175	0.83	-1.4
1,969,600	-		HGI48_RS09175	0.83	+0.1
1,969,600	-		HGI48_RS09175	0.83	-0.9
1,969,600	-		HGI48_RS09175	0.83	-0.4
1,969,636	+		HGI48_RS09175	0.88	-1.6
1,969,636	+		HGI48_RS09175	0.88	-0.8
1,969,636	+		HGI48_RS09175	0.88	-1.6
1,969,636	+		HGI48_RS09175	0.88	-0.1
1,969,636	+		HGI48_RS09175	0.88	+0.1
1,969,636	+		HGI48_RS09175	0.88	-1.9
1,969,636	+				+1.1
1,969,636	+				-0.6
1,969,637	-				+2.0
1,969,637	-		HGI48_RS09175	0.88	-0.3
1,969,637	-		HGI48_RS09175	0.88	-0.6
1,969,640	+		HGI48_RS09175	0.88	-2.2
1,969,640	+		HGI48_RS09175	0.88	-2.8
1,969,641	-		HGI48_RS09175	0.88	+0.1
1,969,641	-		HGI48_RS09175	0.88	+0.6
1,969,641	-				+2.1
1,969,641	-		HGI48_RS09175	0.88	+0.4
1,969,641	-		HGI48_RS09175	0.88	-4.1
1,969,641	-		HGI48_RS09175	0.88	-0.4
1,969,641	-		HGI48_RS09175	0.88	+0.1
1,969,641	-				+0.4
1,969,643	-		HGI48_RS09175	0.89	-0.4
1,969,769	-				+0.4
1,969,769	-				+2.0
1,969,834	-				+1.1
1,969,834	-				+0.7
1,969,844	+				+1.4
1,969,844	+				+0.4
1,969,845	-				-0.6
1,969,845	-				+2.4
1,969,845	-				+0.1
1,969,845	-				-0.6
1,969,846	+				+0.1
1,969,846	+				-0.3
1,969,846	+				+0.4
1,969,846	+				+0.1
1,969,862	-				+0.1
1,969,906	-				+0.1
1,969,928	+				+0.1
1,969,935	+				+4.1
1,969,936	-				-0.8
1,969,942	-				+0.0
1,969,945	-				+1.2
1,969,987	+				-0.1
1,969,988	-				-0.3
1,969,988	-				-1.6
1,969,988	-				+1.0
1,969,988	-				-0.1
1,970,002	+				+0.3
1,970,002	+				-0.1
1,970,067	-		HGI48_RS09180	0.13	+0.0
1,970,133	+		HGI48_RS09180	0.18	+1.0
1,970,257	+		HGI48_RS09180	0.28	-1.2
1,970,257	+		HGI48_RS09180	0.28	+0.5
1,970,258	-		HGI48_RS09180	0.28	-2.4
1,970,283	+		HGI48_RS09180	0.30	-3.2
1,970,284	-		HGI48_RS09180	0.31	-0.3
1,970,362	+		HGI48_RS09180	0.37	-0.9
1,970,363	-		HGI48_RS09180	0.37	+1.9
1,970,363	-		HGI48_RS09180	0.37	-3.2
1,970,521	-		HGI48_RS09180	0.50	-1.7
1,970,545	-		HGI48_RS09180	0.52	+0.4
1,970,599	+		HGI48_RS09180	0.56	+0.4
1,970,599	+		HGI48_RS09180	0.56	+0.0
1,970,600	-		HGI48_RS09180	0.56	-0.9
1,970,600	-		HGI48_RS09180	0.56	-0.4