Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08540 and HGI48_RS08545 are separated by 300 nucleotides HGI48_RS08545 and HGI48_RS08550 are separated by 92 nucleotides HGI48_RS08550 and HGI48_RS08555 are separated by 106 nucleotides HGI48_RS08555 and HGI48_RS08560 are separated by 101 nucleotides HGI48_RS08560 and HGI48_RS08565 are separated by 71 nucleotides HGI48_RS08565 and HGI48_RS08570 are separated by 9 nucleotides
HGI48_RS08540: HGI48_RS08540 - H-NS histone family protein, at 1,837,145 to 1,837,546
_RS08540
HGI48_RS08545: HGI48_RS08545 - helix-turn-helix transcriptional regulator, at 1,837,847 to 1,838,065
_RS08545
HGI48_RS08550: HGI48_RS08550 - helix-turn-helix transcriptional regulator, at 1,838,158 to 1,838,388
_RS08550
HGI48_RS08555: HGI48_RS08555 - helix-turn-helix domain-containing protein, at 1,838,495 to 1,838,740
_RS08555
HGI48_RS08560: HGI48_RS08560 - hypothetical protein, at 1,838,842 to 1,838,985
_RS08560
HGI48_RS08565: HGI48_RS08565 - immunity protein RhsIA, at 1,839,057 to 1,839,464
_RS08565
HGI48_RS08570: HGI48_RS08570 - PAAR domain-containing protein, at 1,839,474 to 1,843,823
_RS08570
Position (kb) 1838
1839 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 1837.519 kb on + strand at 1837.524 kb on - strand at 1837.585 kb on - strand at 1837.588 kb on - strand at 1837.610 kb on + strand at 1837.613 kb on + strand at 1837.701 kb on + strand at 1837.701 kb on + strand at 1837.767 kb on + strand at 1837.767 kb on + strand at 1837.768 kb on - strand at 1837.949 kb on - strand, within HGI48_RS08545 at 1837.950 kb on + strand, within HGI48_RS08545 at 1837.950 kb on + strand, within HGI48_RS08545 at 1837.950 kb on + strand, within HGI48_RS08545 at 1837.950 kb on + strand, within HGI48_RS08545 at 1837.951 kb on - strand, within HGI48_RS08545 at 1837.951 kb on - strand, within HGI48_RS08545 at 1837.951 kb on - strand, within HGI48_RS08545 at 1838.125 kb on + strand at 1838.125 kb on + strand at 1838.126 kb on - strand at 1838.126 kb on - strand at 1838.177 kb on - strand at 1838.199 kb on + strand, within HGI48_RS08550 at 1838.220 kb on + strand, within HGI48_RS08550 at 1838.221 kb on - strand, within HGI48_RS08550 at 1838.221 kb on - strand, within HGI48_RS08550 at 1838.222 kb on + strand, within HGI48_RS08550 at 1838.222 kb on + strand at 1838.222 kb on + strand, within HGI48_RS08550 at 1838.223 kb on - strand, within HGI48_RS08550 at 1838.223 kb on - strand at 1838.223 kb on - strand, within HGI48_RS08550 at 1838.273 kb on + strand, within HGI48_RS08550 at 1838.274 kb on - strand, within HGI48_RS08550 at 1838.274 kb on - strand, within HGI48_RS08550 at 1838.274 kb on - strand, within HGI48_RS08550 at 1838.274 kb on - strand, within HGI48_RS08550 at 1838.393 kb on + strand at 1838.393 kb on + strand at 1838.394 kb on - strand at 1838.394 kb on - strand at 1838.468 kb on - strand at 1838.494 kb on + strand at 1838.494 kb on + strand at 1838.495 kb on - strand at 1838.597 kb on - strand, within HGI48_RS08555 at 1838.597 kb on - strand at 1838.608 kb on + strand, within HGI48_RS08555 at 1838.609 kb on - strand, within HGI48_RS08555 at 1838.781 kb on - strand at 1838.781 kb on - strand at 1838.956 kb on - strand, within HGI48_RS08560 at 1838.984 kb on - strand at 1839.014 kb on - strand at 1839.637 kb on + strand at 1839.654 kb on - strand at 1839.714 kb on + strand at 1839.714 kb on + strand at 1839.714 kb on + strand at 1839.715 kb on - strand at 1839.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,837,519 + +0.0 1,837,524 - -1.5 1,837,585 - -1.9 1,837,588 - -0.1 1,837,610 + +0.3 1,837,613 + +1.3 1,837,701 + -1.1 1,837,701 + -0.3 1,837,767 + -0.3 1,837,767 + -0.1 1,837,768 - +0.2 1,837,949 - HGI48_RS08545 0.47 -2.9 1,837,950 + HGI48_RS08545 0.47 -0.1 1,837,950 + HGI48_RS08545 0.47 -0.5 1,837,950 + HGI48_RS08545 0.47 +0.1 1,837,950 + HGI48_RS08545 0.47 -0.7 1,837,951 - HGI48_RS08545 0.47 +0.4 1,837,951 - HGI48_RS08545 0.47 -0.1 1,837,951 - HGI48_RS08545 0.47 -0.0 1,838,125 + -0.6 1,838,125 + +0.2 1,838,126 - -0.6 1,838,126 - +0.2 1,838,177 - +0.4 1,838,199 + HGI48_RS08550 0.18 +0.3 1,838,220 + HGI48_RS08550 0.27 -1.6 1,838,221 - HGI48_RS08550 0.27 +0.0 1,838,221 - HGI48_RS08550 0.27 +0.5 1,838,222 + HGI48_RS08550 0.28 -0.9 1,838,222 + +2.0 1,838,222 + HGI48_RS08550 0.28 -0.2 1,838,223 - HGI48_RS08550 0.28 -2.6 1,838,223 - +1.7 1,838,223 - HGI48_RS08550 0.28 +0.7 1,838,273 + HGI48_RS08550 0.50 -0.8 1,838,274 - HGI48_RS08550 0.50 +0.0 1,838,274 - HGI48_RS08550 0.50 -0.7 1,838,274 - HGI48_RS08550 0.50 -1.9 1,838,274 - HGI48_RS08550 0.50 +0.1 1,838,393 + -0.7 1,838,393 + -0.6 1,838,394 - -0.1 1,838,394 - +0.4 1,838,468 - -0.0 1,838,494 + -1.4 1,838,494 + -1.9 1,838,495 - -0.6 1,838,597 - HGI48_RS08555 0.41 -1.6 1,838,597 - +0.4 1,838,608 + HGI48_RS08555 0.46 -1.6 1,838,609 - HGI48_RS08555 0.46 +0.3 1,838,781 - +1.5 1,838,781 - +0.4 1,838,956 - HGI48_RS08560 0.79 +0.8 1,838,984 - +0.6 1,839,014 - -1.3 1,839,637 + -2.1 1,839,654 - +0.1 1,839,714 + -0.9 1,839,714 + -1.6 1,839,714 + -6.3 1,839,715 - -0.4 1,839,715 - -1.0
Or see this region's nucleotide sequence