Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08510

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,832,982	+		HGI48_RS08505	0.75	-1.4
1,832,982	+		HGI48_RS08505	0.75	-1.0
1,832,983	-		HGI48_RS08505	0.76	+0.4
1,833,045	+				+0.0
1,833,060	+				-0.2
1,833,060	+				+0.0
1,833,061	-				+0.2
1,833,101	-				-0.1
1,833,128	-				-1.3
1,833,128	-				-2.4
1,833,141	+				+1.4
1,833,169	-				+0.4
1,833,225	+				+0.3
1,833,225	+				+0.4
1,833,225	+				+1.2
1,833,226	-				-2.3
1,833,226	-				+0.7
1,833,226	-				+0.2
1,833,240	+				-1.1
1,833,248	+				+0.9
1,833,248	+				+0.1
1,833,248	+				+1.2
1,833,252	+				-0.5
1,833,252	+				+0.9
1,833,252	+				-0.3
1,833,252	+				-0.8
1,833,252	+				-1.1
1,833,253	-				+0.1
1,833,253	-				-0.6
1,833,253	-				-1.5
1,833,256	-				+0.2
1,833,256	-				+0.5
1,833,264	+				-0.0
1,833,264	+				-0.9
1,833,264	+				-0.1
1,833,264	+				-1.6
1,833,264	+				+1.2
1,833,264	+				-0.4
1,833,264	+				+1.0
1,833,265	-				+0.4
1,833,265	-				+0.0
1,833,265	-				+1.8
1,833,265	-				+1.3
1,833,265	-				-0.0
1,833,268	+				-0.3
1,833,268	+				+0.4
1,833,268	+				+0.5
1,833,269	-				-2.1
1,833,279	+				+0.3
1,833,279	+				-0.2
1,833,280	-				+1.1
1,833,280	-				-0.9
1,833,280	-				+1.0
1,833,283	+				+0.6
1,833,283	+				+1.3
1,833,283	+				-0.6
1,833,283	+				-0.9
1,833,284	-				-0.9
1,833,284	-				-0.6
1,833,284	-				-0.5
1,833,288	+				+0.6
1,833,322	+				-0.1
1,833,406	-				+0.0
1,833,411	+				+0.0
1,833,411	+				+0.0
1,833,411	+				+0.0
1,833,411	+				-2.6
1,833,411	+				+0.5
1,833,412	-				-0.1
1,833,412	-				-0.7
1,833,412	-				+1.6
1,833,452	-				+0.0
1,833,485	-				+1.8
1,833,538	+				+1.4
1,833,538	+				+0.1
1,833,628	+				-0.2
1,833,629	-				-2.1
1,833,629	-				-1.6
1,833,655	+				-0.6
1,833,656	-				-0.6
1,833,676	-				-0.9
1,833,676	-				+0.6
1,833,683	-				-0.3
1,833,683	-				+0.0
1,833,689	-				-0.6
1,833,689	-				-1.8
1,833,714	+				+0.0
1,833,724	+				+0.2
1,833,724	+				+0.2
1,833,724	+				+0.2
1,833,724	+				-1.1
1,833,724	+				-1.1
1,833,724	+				-0.2
1,833,725	-				+0.0
1,833,725	-				+2.0
1,833,725	-				+2.5
1,833,748	+				-0.2
1,833,748	+				-1.1
1,833,748	+				+1.3
1,833,749	-				+1.0
1,833,752	+				-2.0
1,833,752	+				+1.6
1,833,752	+				-0.9
1,833,752	+				-0.1
1,833,753	-				-2.7
1,833,753	-				-1.1
1,833,753	-				+1.0
1,833,753	-				-0.3
1,833,758	+				-0.7
1,833,760	+				-0.4
1,833,760	+				-0.1
1,833,840	+				+0.2
1,833,840	+				-0.6
1,833,841	-				+0.4
1,833,876	+				-1.1
1,833,877	-				-0.6
1,833,879	+				-0.6
1,833,879	+				+0.1
1,833,879	+				+0.1
1,833,879	+				-0.7
1,833,880	-				+0.1
1,833,880	-				-0.1
1,833,901	-				+0.7
1,833,929	+				+0.4
1,833,930	-				+0.8
1,833,931	+				-0.6
1,833,931	+				+0.0
1,833,931	+				-0.1
1,833,985	+		HGI48_RS08510	0.13	-2.0
1,833,985	+		HGI48_RS08510	0.13	-1.7
1,833,986	-		HGI48_RS08510	0.13	-0.2
1,834,103	+				+1.8
1,834,103	+		HGI48_RS08510	0.26	-1.9
1,834,103	+		HGI48_RS08510	0.26	-0.6
1,834,103	+		HGI48_RS08510	0.26	+0.5
1,834,103	+		HGI48_RS08510	0.26	-2.4
1,834,104	-		HGI48_RS08510	0.26	+0.7
1,834,104	-		HGI48_RS08510	0.26	+1.0
1,834,104	-		HGI48_RS08510	0.26	-1.1
1,834,105	+		HGI48_RS08510	0.26	+0.9
1,834,105	+		HGI48_RS08510	0.26	-0.6
1,834,106	-		HGI48_RS08510	0.26	-1.1
1,834,106	-		HGI48_RS08510	0.26	-1.1
1,834,121	+		HGI48_RS08510	0.28	-2.1
1,834,122	-		HGI48_RS08510	0.28	+2.0
1,834,122	-		HGI48_RS08510	0.28	+0.1
1,834,134	-		HGI48_RS08510	0.30	+0.3
1,834,134	-		HGI48_RS08510	0.30	+0.3
1,834,134	-				-0.1
1,834,135	+		HGI48_RS08510	0.30	+1.3
1,834,135	+		HGI48_RS08510	0.30	-0.7
1,834,135	+		HGI48_RS08510	0.30	+0.4
1,834,135	+		HGI48_RS08510	0.30	+0.9
1,834,136	-		HGI48_RS08510	0.30	-0.9
1,834,136	-		HGI48_RS08510	0.30	+1.1
1,834,136	-		HGI48_RS08510	0.30	+0.1
1,834,136	-		HGI48_RS08510	0.30	+0.3
1,834,136	-		HGI48_RS08510	0.30	-0.4
1,834,172	+		HGI48_RS08510	0.34	-1.1
1,834,172	+		HGI48_RS08510	0.34	-0.0
1,834,173	-		HGI48_RS08510	0.34	+0.3
1,834,173	-		HGI48_RS08510	0.34	-0.7
1,834,173	-		HGI48_RS08510	0.34	-1.6
1,834,255	+		HGI48_RS08510	0.43	-0.0
1,834,255	+		HGI48_RS08510	0.43	-2.6
1,834,255	+				-1.1
1,834,266	+		HGI48_RS08510	0.44	-2.4
1,834,266	+		HGI48_RS08510	0.44	-0.6
1,834,266	+		HGI48_RS08510	0.44	-0.0
1,834,266	+		HGI48_RS08510	0.44	+0.4
1,834,266	+		HGI48_RS08510	0.44	-0.1
1,834,267	-		HGI48_RS08510	0.44	-0.4
1,834,267	-		HGI48_RS08510	0.44	-1.9
1,834,267	-		HGI48_RS08510	0.44	-0.1
1,834,352	+		HGI48_RS08510	0.53	-0.2
1,834,353	-		HGI48_RS08510	0.53	+0.4
1,834,399	+		HGI48_RS08510	0.58	-0.6
1,834,498	+		HGI48_RS08510	0.69	+1.0
1,834,499	-		HGI48_RS08510	0.69	-0.6
1,834,520	-		HGI48_RS08510	0.72	-1.9
1,834,535	+		HGI48_RS08510	0.73	-0.2
1,834,535	+		HGI48_RS08510	0.73	-2.2
1,834,535	+				-1.1
1,834,535	+		HGI48_RS08510	0.73	-0.9
1,834,535	+		HGI48_RS08510	0.73	+0.4
1,834,536	-		HGI48_RS08510	0.73	+2.1
1,834,536	-		HGI48_RS08510	0.73	+1.4
1,834,536	-		HGI48_RS08510	0.73	-0.4
1,834,582	+		HGI48_RS08510	0.78	-1.4
1,834,583	-		HGI48_RS08510	0.78	+0.0
1,834,583	-				+1.7
1,834,675	+		HGI48_RS08510	0.88	-1.6
1,834,675	+		HGI48_RS08510	0.88	+0.4
1,834,676	-		HGI48_RS08510	0.89	+1.3
1,834,676	-		HGI48_RS08510	0.89	-0.9
1,834,676	-		HGI48_RS08510	0.89	+0.4
1,834,676	-				+1.2
1,834,686	+		HGI48_RS08510	0.90	+0.9
1,834,686	+		HGI48_RS08510	0.90	-1.1
1,834,686	+		HGI48_RS08510	0.90	-0.8
1,834,687	-		HGI48_RS08510	0.90	+1.4
1,834,696	+				-0.9
1,834,696	+				-1.9
1,834,697	-				-0.8
1,834,697	-				-1.1
1,834,697	-				-0.7
1,834,699	+				-0.9
1,834,699	+				-0.7
1,834,699	+				-3.4
1,834,699	+				-0.3
1,834,700	-				+0.3
1,834,701	+				+0.6
1,834,701	+				-0.1
1,834,701	+				-0.6
1,834,702	-				-0.6
1,834,718	+				-0.7
1,834,748	-				+0.0
1,834,774	+				+0.3
1,834,774	+				+0.9
1,834,774	+				+0.0
1,834,775	-				-0.9
1,834,778	+				-0.1
1,834,778	+				-1.1
1,834,778	+				+0.0
1,834,778	+				-0.4
1,834,779	-				-0.6
1,834,779	-				+0.7
1,834,779	-				+1.2
1,834,833	+				+0.9
1,834,833	+				-2.4
1,834,833	+				+0.5
1,834,833	+				+0.9
1,834,834	-				+1.2
1,834,834	-				+0.5
1,834,834	-				-1.1
1,834,836	-				-2.4
1,834,864	+				+0.7
1,834,878	+				-2.4
1,834,878	+				-0.9
1,834,879	-				-0.9
1,834,910	+				-0.1
1,834,910	+				+0.4
1,834,910	+				-1.1
1,834,911	-				-0.9
1,834,966	-		HGI48_RS08515	0.17	-0.2
1,834,966	-		HGI48_RS08515	0.17	-0.6
1,834,966	-		HGI48_RS08515	0.17	-0.3
1,834,966	-		HGI48_RS08515	0.17	-1.6
1,834,966	-				-0.1
1,834,966	-		HGI48_RS08515	0.17	-1.6
1,834,966	-		HGI48_RS08515	0.17	+0.8
1,835,111	+		HGI48_RS08515	0.80	-0.3
1,835,212	+				-0.3
1,835,256	+		HGI48_RS08520	0.14	+0.8
1,835,256	+		HGI48_RS08520	0.14	-0.3
1,835,257	-		HGI48_RS08520	0.15	-0.2
1,835,257	-		HGI48_RS08520	0.15	+0.4
1,835,262	+		HGI48_RS08520	0.16	-1.4
1,835,262	+		HGI48_RS08520	0.16	-0.9
1,835,262	+				+2.2
1,835,267	+				-0.1
1,835,267	+		HGI48_RS08520	0.18	+0.5
1,835,267	+		HGI48_RS08520	0.18	-1.6
1,835,267	+		HGI48_RS08520	0.18	+0.6
1,835,267	+		HGI48_RS08520	0.18	-0.4
1,835,267	+		HGI48_RS08520	0.18	+0.9
1,835,267	+		HGI48_RS08520	0.18	-2.1
1,835,267	+		HGI48_RS08520	0.18	+1.0
1,835,267	+		HGI48_RS08520	0.18	-0.6
1,835,268	-		HGI48_RS08520	0.18	-0.0
1,835,268	-		HGI48_RS08520	0.18	-0.1
1,835,268	-		HGI48_RS08520	0.18	+0.9
1,835,268	-		HGI48_RS08520	0.18	-0.6
1,835,268	-		HGI48_RS08520	0.18	+0.2
1,835,268	-		HGI48_RS08520	0.18	+0.1
1,835,268	-		HGI48_RS08520	0.18	-1.8
1,835,268	-		HGI48_RS08520	0.18	+0.0
1,835,268	-				+0.4
1,835,271	+		HGI48_RS08520	0.19	+0.4
1,835,271	+		HGI48_RS08520	0.19	-0.0
1,835,271	+		HGI48_RS08520	0.19	+0.2
1,835,271	+		HGI48_RS08520	0.19	-1.6
1,835,271	+		HGI48_RS08520	0.19	-0.6
1,835,272	-		HGI48_RS08520	0.20	-0.3
1,835,272	-		HGI48_RS08520	0.20	-0.1
1,835,272	-		HGI48_RS08520	0.20	-0.1
1,835,272	-		HGI48_RS08520	0.20	+1.0
1,835,272	-		HGI48_RS08520	0.20	+0.1
1,835,272	-		HGI48_RS08520	0.20	-1.2
1,835,272	-		HGI48_RS08520	0.20	+1.0
1,835,299	+		HGI48_RS08520	0.28	+0.4
1,835,299	+		HGI48_RS08520	0.28	+0.4
1,835,299	+		HGI48_RS08520	0.28	+0.0
1,835,300	-		HGI48_RS08520	0.29	+1.0
1,835,300	-				+1.0
1,835,337	-		HGI48_RS08520	0.40	-1.0
1,835,359	-				-0.6
1,835,455	+		HGI48_RS08520	0.78	-0.3
1,835,467	+		HGI48_RS08520	0.82	-1.3
1,835,467	+		HGI48_RS08520	0.82	-0.7
1,835,468	-		HGI48_RS08520	0.82	+0.2
1,835,468	-		HGI48_RS08520	0.82	+0.4
1,835,468	-		HGI48_RS08520	0.82	+0.4
1,835,468	-		HGI48_RS08520	0.82	+0.4
1,835,490	-		HGI48_RS08520	0.89	+0.1
1,835,560	+		HGI48_RS08525	0.14	-0.6
1,835,560	+		HGI48_RS08525	0.14	-0.3
1,835,560	+		HGI48_RS08525	0.14	-0.8
1,835,611	-		HGI48_RS08525	0.32	-0.4
1,835,671	-		HGI48_RS08525	0.53	-1.1