Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07780

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,663,768	+		HGI48_RS07775	0.51	-1.5
1,663,782	+		HGI48_RS07775	0.52	+0.5
1,663,782	+				-1.1
1,663,782	+		HGI48_RS07775	0.52	-0.5
1,663,783	-		HGI48_RS07775	0.52	-1.8
1,663,989	+		HGI48_RS07775	0.75	+0.8
1,663,989	+		HGI48_RS07775	0.75	+0.3
1,663,990	-		HGI48_RS07775	0.75	-0.5
1,663,990	-		HGI48_RS07775	0.75	-0.8
1,664,017	+		HGI48_RS07775	0.78	-0.5
1,664,017	+		HGI48_RS07775	0.78	-1.5
1,664,017	+		HGI48_RS07775	0.78	-0.4
1,664,017	+				+0.5
1,664,018	-				-0.5
1,664,018	-		HGI48_RS07775	0.78	+1.8
1,664,069	+		HGI48_RS07775	0.84	-3.2
1,664,070	-		HGI48_RS07775	0.84	+0.2
1,664,070	-		HGI48_RS07775	0.84	-0.5
1,664,083	-		HGI48_RS07775	0.86	-0.8
1,664,125	+				+1.1
1,664,126	-				+0.5
1,664,126	-				+1.1
1,664,195	+				+0.2
1,664,195	+				-0.7
1,664,195	+				+0.2
1,664,195	+				+1.2
1,664,196	-				-0.5
1,664,213	-				+0.8
1,664,213	-				-1.1
1,664,213	-				+0.2
1,664,270	+				+1.4
1,664,286	+				-0.3
1,664,286	+				+0.8
1,664,286	+				-0.4
1,664,286	+				+1.8
1,664,286	+				+0.6
1,664,286	+				+0.9
1,664,286	+				-1.1
1,664,287	-				-0.5
1,664,287	-				+1.1
1,664,287	-				-2.7
1,664,287	-				-2.0
1,664,305	+				+1.3
1,664,305	+				+1.8
1,664,317	+				+0.1
1,664,317	+				+1.2
1,664,318	-				-0.4
1,664,318	-				-0.5
1,664,337	+				-0.5
1,664,338	-				-1.8
1,664,338	-				-0.3
1,664,365	+				+1.5
1,664,365	+				-1.1
1,664,365	+				-0.1
1,664,366	-				-0.2
1,664,366	-				-1.1
1,664,373	+				-1.8
1,664,489	+				+2.7
1,664,490	-				+0.5
1,664,490	-				-2.3
1,664,567	-		HGI48_RS07780	0.12	-0.9
1,664,567	-		HGI48_RS07780	0.12	-0.3
1,664,597	-		HGI48_RS07780	0.14	+1.8
1,664,620	+		HGI48_RS07780	0.16	-0.2
1,664,620	+		HGI48_RS07780	0.16	+0.5
1,664,621	-		HGI48_RS07780	0.16	+0.5
1,664,621	-		HGI48_RS07780	0.16	-1.8
1,664,621	-				+1.9
1,664,730	-		HGI48_RS07780	0.23	-0.1
1,664,738	+		HGI48_RS07780	0.23	+0.8
1,664,738	+		HGI48_RS07780	0.23	-0.1
1,664,738	+		HGI48_RS07780	0.23	-0.7
1,664,739	-		HGI48_RS07780	0.23	-0.7
1,664,739	-		HGI48_RS07780	0.23	+0.1
1,664,933	+		HGI48_RS07780	0.36	+0.5
1,664,933	+		HGI48_RS07780	0.36	+1.3
1,664,933	+		HGI48_RS07780	0.36	-0.2
1,664,933	+		HGI48_RS07780	0.36	+1.1
1,664,933	+		HGI48_RS07780	0.36	+1.3
1,664,933	+		HGI48_RS07780	0.36	+0.2
1,664,934	-		HGI48_RS07780	0.36	-0.9
1,664,934	-		HGI48_RS07780	0.36	+0.5
1,664,934	-		HGI48_RS07780	0.36	-0.8
1,664,934	-		HGI48_RS07780	0.36	-0.5
1,664,934	-		HGI48_RS07780	0.36	-0.9
1,664,934	-		HGI48_RS07780	0.36	-1.4
1,665,161	+		HGI48_RS07780	0.51	+0.1
1,665,161	+		HGI48_RS07780	0.51	-0.5
1,665,162	-		HGI48_RS07780	0.51	-2.5
1,665,181	+				+2.1
1,665,181	+		HGI48_RS07780	0.52	-1.7
1,665,182	-		HGI48_RS07780	0.52	-1.2
1,665,377	+		HGI48_RS07780	0.65	-0.7
1,665,378	-				-1.1
1,665,835	+				-1.1
1,665,835	+				+0.0
1,665,859	+				-0.5
1,665,859	+				+0.5
1,665,859	+				-0.7
1,665,859	+				+0.4
1,665,860	-				-1.3
1,665,860	-				+1.7
1,665,863	+				-0.2
1,665,863	+				+1.9
1,665,863	+				-0.8
1,665,863	+				+1.6
1,665,863	+				+0.5
1,665,863	+				+2.7
1,665,864	-				-1.5
1,665,864	-				-1.7
1,665,864	-				-0.8
1,665,864	-				-0.1
1,665,864	-				-1.8
1,665,897	-				+0.2
1,665,914	+				+0.7
1,665,960	-				+0.3
1,665,960	-				-0.5
1,665,960	-				-1.7
1,665,960	-				+0.8
1,665,969	+				-0.5
1,665,970	-				+0.5
1,666,016	+				-1.1
1,666,016	+				-1.1
1,666,016	+				-0.5
1,666,016	+				-0.2
1,666,016	+				-2.5
1,666,016	+				+0.0
1,666,016	+				-1.0
1,666,017	-				-1.7
1,666,017	-				+0.8
1,666,017	-				-0.3
1,666,017	-				-1.8
1,666,017	-				+0.5
1,666,017	-				-0.6
1,666,024	+				-2.5
1,666,024	+				-0.1
1,666,024	+				-1.8
1,666,024	+				+1.2
1,666,024	+				-0.2
1,666,025	-				+0.5
1,666,025	-				-0.2
1,666,072	+				+0.2
1,666,073	-				-0.2
1,666,073	-				-1.1
1,666,073	-				-2.5
1,666,081	+				-1.8
1,666,082	-				+1.1
1,666,083	+				-0.1
1,666,084	-				-1.8
1,666,084	-				-0.7
1,666,084	-				+0.5
1,666,084	-				+1.5
1,666,084	-				+0.8
1,666,084	-				-3.0
1,666,182	-				+0.7
1,666,182	-				+0.9
1,666,182	-				+1.4
1,666,182	-				-0.2
1,666,202	-				-1.1
1,666,202	-				-0.5
1,666,210	-				-1.3
1,666,246	+				-1.8
1,666,247	-				+0.5
1,666,247	-				-0.5
1,666,247	-				-2.3
1,666,249	+				+1.5
1,666,276	+				+0.5
1,666,277	-				+1.2
1,666,277	-				-2.5
1,666,277	-				-1.4
1,666,277	-				-0.5
1,666,425	+		HGI48_RS07785	0.16	+1.6
1,666,426	-		HGI48_RS07785	0.17	-0.8
1,666,426	-		HGI48_RS07785	0.17	+0.5
1,666,426	-		HGI48_RS07785	0.17	-1.8
1,666,426	-		HGI48_RS07785	0.17	+0.8
1,666,434	+		HGI48_RS07785	0.17	+0.5
1,666,434	+		HGI48_RS07785	0.17	-0.1
1,666,434	+		HGI48_RS07785	0.17	-0.7
1,666,434	+		HGI48_RS07785	0.17	-1.2
1,666,435	-		HGI48_RS07785	0.18	+0.4
1,666,450	+		HGI48_RS07785	0.19	-2.3
1,666,450	+		HGI48_RS07785	0.19	+0.3
1,666,556	-		HGI48_RS07785	0.30	-0.2
1,666,630	+		HGI48_RS07785	0.38	-0.8
1,666,630	+		HGI48_RS07785	0.38	-0.9
1,666,631	-		HGI48_RS07785	0.38	-0.5
1,666,631	-				+1.2
1,666,631	-		HGI48_RS07785	0.38	+0.4