Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05865

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,237,956	+		HGI48_RS05860	0.75	-0.4
1,237,956	+		HGI48_RS05860	0.75	-0.3
1,237,957	-		HGI48_RS05860	0.75	-0.3
1,238,184	-		HGI48_RS05860	0.88	+1.2
1,238,273	-				-1.3
1,238,291	+				-0.0
1,238,291	+				-1.6
1,238,291	+				-1.3
1,238,291	+				-1.9
1,238,292	-				+4.9
1,238,292	-				+1.0
1,238,372	+				+0.1
1,238,373	-				-1.9
1,238,494	+				-0.3
1,238,494	+				+0.3
1,238,494	+				+0.5
1,238,494	+				+0.1
1,238,494	+				-1.9
1,238,494	+				-1.6
1,238,494	+				-0.6
1,238,494	+				+0.4
1,238,494	+				-0.6
1,238,494	+				-0.3
1,238,494	+				+0.1
1,238,495	-				+1.1
1,238,495	-				-0.2
1,238,495	-				-0.6
1,238,495	-				-1.6
1,238,495	-				-1.6
1,238,498	+				-1.9
1,238,498	+				+0.4
1,238,498	+				-2.1
1,238,498	+				-1.6
1,238,498	+				+0.4
1,238,499	-				+0.9
1,238,499	-				+0.4
1,238,594	+				-0.6
1,238,594	+				-2.3
1,238,595	-				-0.8
1,238,625	+				+0.1
1,238,670	-				-1.2
1,238,724	-				+0.7
1,238,724	-				-2.0
1,238,724	-				-1.6
1,238,762	+				+0.0
1,238,763	-				+1.5
1,238,766	-				+0.7
1,238,766	-				-0.9
1,238,807	+				-0.3
1,238,807	+				+0.3
1,238,838	-				-0.5
1,238,862	+				-1.9
1,238,868	-				-1.6
1,238,876	+				+0.1
1,238,876	+				-0.3
1,238,889	+				+0.3
1,238,905	+				+0.2
1,238,992	+				-0.9
1,238,999	+				-2.1
1,238,999	+				-2.4
1,238,999	+				+0.7
1,238,999	+				+1.1
1,239,000	-				-0.0
1,239,000	-				+0.1
1,239,019	+				+0.6
1,239,019	+				+0.3
1,239,157	+		HGI48_RS05865	0.15	+0.0
1,239,332	+		HGI48_RS05865	0.26	-0.6
1,239,332	+		HGI48_RS05865	0.26	+0.3
1,239,333	-		HGI48_RS05865	0.26	+0.9
1,239,453	-		HGI48_RS05865	0.33	-0.2
1,239,566	+		HGI48_RS05865	0.40	+0.5
1,239,566	+		HGI48_RS05865	0.40	-0.3
1,239,567	-		HGI48_RS05865	0.40	-1.6
1,239,710	+		HGI48_RS05865	0.49	+1.0
1,239,710	+		HGI48_RS05865	0.49	-0.0
1,239,710	+		HGI48_RS05865	0.49	-1.7
1,239,710	+		HGI48_RS05865	0.49	+0.4
1,239,711	-		HGI48_RS05865	0.49	+1.0
1,239,711	-		HGI48_RS05865	0.49	+1.5
1,239,711	-		HGI48_RS05865	0.49	-1.0
1,239,711	-		HGI48_RS05865	0.49	-0.1
1,239,711	-		HGI48_RS05865	0.49	+0.9
1,239,711	-				-0.9
1,239,711	-		HGI48_RS05865	0.49	-0.4
1,239,711	-		HGI48_RS05865	0.49	+0.8
1,239,762	+		HGI48_RS05865	0.52	-0.6
1,239,762	+				+0.1
1,239,763	-		HGI48_RS05865	0.52	-0.2
1,239,785	+		HGI48_RS05865	0.53	+0.5
1,239,785	+		HGI48_RS05865	0.53	-1.7
1,239,785	+		HGI48_RS05865	0.53	+0.2
1,239,785	+		HGI48_RS05865	0.53	+1.4
1,239,786	-		HGI48_RS05865	0.53	-0.5
1,239,786	-		HGI48_RS05865	0.53	+1.2
1,239,805	+		HGI48_RS05865	0.54	+0.2
1,239,806	-		HGI48_RS05865	0.54	+1.5
1,239,839	+		HGI48_RS05865	0.56	+0.4
1,239,839	+		HGI48_RS05865	0.56	+0.6
1,239,839	+		HGI48_RS05865	0.56	-0.3
1,239,839	+		HGI48_RS05865	0.56	+1.0
1,239,840	-		HGI48_RS05865	0.57	+1.3
1,239,840	-		HGI48_RS05865	0.57	+0.7
1,239,840	-		HGI48_RS05865	0.57	+1.1
1,239,905	+		HGI48_RS05865	0.60	-2.9
1,239,906	-		HGI48_RS05865	0.60	+0.9
1,239,908	+		HGI48_RS05865	0.61	+0.4
1,239,908	+		HGI48_RS05865	0.61	+0.2
1,239,908	+		HGI48_RS05865	0.61	-0.1
1,239,908	+		HGI48_RS05865	0.61	-2.1
1,239,908	+		HGI48_RS05865	0.61	-1.3
1,239,908	+		HGI48_RS05865	0.61	-0.0
1,239,908	+				+1.1
1,239,908	+		HGI48_RS05865	0.61	-1.6
1,239,908	+		HGI48_RS05865	0.61	-0.4
1,239,909	-		HGI48_RS05865	0.61	-2.1
1,239,909	-				-0.3
1,239,909	-		HGI48_RS05865	0.61	-1.9
1,240,163	+		HGI48_RS05865	0.76	-0.3
1,240,164	-		HGI48_RS05865	0.76	-0.9
1,240,164	-		HGI48_RS05865	0.76	-1.3
1,240,208	+		HGI48_RS05865	0.79	-1.6
1,240,209	-		HGI48_RS05865	0.79	-0.9
1,240,283	+		HGI48_RS05865	0.83	+0.7
1,240,283	+				-0.3
1,240,376	+		HGI48_RS05865	0.89	-0.1
1,240,387	+		HGI48_RS05865	0.90	+0.4
1,240,387	+		HGI48_RS05865	0.90	+0.9
1,240,448	+				+0.9
1,240,448	+				-0.3
1,240,448	+				-1.0
1,240,449	-				-1.1
1,240,449	-				+1.5
1,240,490	+				+0.1
1,240,491	-				-0.7
1,240,491	-				+0.7
1,240,550	+				+0.1
1,240,556	+				-0.0
1,240,556	+				-0.7
1,240,557	-				+0.5
1,240,567	+				-1.6
1,240,567	+				-0.0
1,240,567	+				+0.3
1,240,636	+				+1.0
1,240,636	+				+0.1
1,240,636	+				+1.4
1,240,637	-				+0.4
1,240,637	-				-1.6
1,240,644	+				-0.3
1,240,644	+				-0.3
1,240,644	+				+0.6
1,240,645	-				-1.6
1,240,645	-				-1.6
1,240,704	-				+0.4
1,240,788	-				-1.3
1,240,796	+				-0.3
1,240,796	+				+0.6
1,240,796	+				+0.4
1,240,798	+				-0.0
1,240,805	+				-0.9
1,240,805	+				+0.9
1,240,806	-				-0.6
1,240,824	-				+0.9
1,240,824	-				-2.1
1,240,849	+				-0.2
1,240,857	+				+1.2
1,240,891	+				-0.0
1,240,891	+				-0.9
1,240,892	-				-0.9
1,240,892	-				+1.3
1,240,892	-				-0.2
1,240,914	+				+0.7
1,240,915	-				+1.3
1,240,915	-				-1.9
1,240,924	-				+0.3
1,240,955	-				-0.7
1,240,960	+				+3.9
1,240,961	-				-0.5
1,240,991	+				+0.4
1,241,001	+				+0.4
1,241,043	+				-0.9
1,241,043	+				+0.1
1,241,044	-				+0.7
1,241,044	-				+0.7
1,241,073	+				-0.8
1,241,084	-		HGI48_RS05870	0.11	+0.4
1,241,084	-		HGI48_RS05870	0.11	-1.9
1,241,181	-		HGI48_RS05870	0.17	-0.3
1,241,193	+				+0.7
1,241,193	+		HGI48_RS05870	0.17	-0.1
1,241,193	+		HGI48_RS05870	0.17	+0.4
1,241,193	+		HGI48_RS05870	0.17	-0.2
1,241,194	-		HGI48_RS05870	0.18	+0.2
1,241,214	+		HGI48_RS05870	0.19	+0.3
1,241,215	-		HGI48_RS05870	0.19	-1.3
1,241,215	-		HGI48_RS05870	0.19	-0.5
1,241,215	-		HGI48_RS05870	0.19	+0.3
1,241,227	-		HGI48_RS05870	0.20	+0.4
1,241,227	-		HGI48_RS05870	0.20	+1.2
1,241,327	+		HGI48_RS05870	0.26	+0.3
1,241,328	-				-0.9
1,241,329	+		HGI48_RS05870	0.26	+0.2
1,241,329	+		HGI48_RS05870	0.26	-1.8
1,241,329	+		HGI48_RS05870	0.26	-1.9
1,241,329	+		HGI48_RS05870	0.26	-0.6
1,241,330	-		HGI48_RS05870	0.26	-0.9
1,241,336	+		HGI48_RS05870	0.26	+1.3
1,241,336	+				+0.7
1,241,337	-		HGI48_RS05870	0.27	-1.6
1,241,374	+		HGI48_RS05870	0.29	-2.1
1,241,375	-		HGI48_RS05870	0.29	-2.6
1,241,375	-		HGI48_RS05870	0.29	+0.9
1,241,384	+		HGI48_RS05870	0.29	-0.0
1,241,384	+		HGI48_RS05870	0.29	+0.6
1,241,384	+		HGI48_RS05870	0.29	-0.9
1,241,385	-		HGI48_RS05870	0.30	+1.0
1,241,385	-		HGI48_RS05870	0.30	+1.0
1,241,386	+				-0.9
1,241,386	+		HGI48_RS05870	0.30	+0.4
1,241,387	-		HGI48_RS05870	0.30	+1.1
1,241,387	-		HGI48_RS05870	0.30	-1.9
1,241,387	-		HGI48_RS05870	0.30	-1.6
1,241,387	-		HGI48_RS05870	0.30	-0.4
1,241,387	-		HGI48_RS05870	0.30	-0.1
1,241,396	+		HGI48_RS05870	0.30	+0.5
1,241,416	-		HGI48_RS05870	0.32	+0.5
1,241,416	-		HGI48_RS05870	0.32	+1.0
1,241,419	+		HGI48_RS05870	0.32	-2.5
1,241,419	+		HGI48_RS05870	0.32	+2.3
1,241,432	+		HGI48_RS05870	0.33	+0.7
1,241,432	+				-0.9
1,241,444	-		HGI48_RS05870	0.33	-0.7
1,241,462	+		HGI48_RS05870	0.34	+0.4
1,241,462	+		HGI48_RS05870	0.34	-1.6
1,241,463	-				+0.7
1,241,470	-		HGI48_RS05870	0.35	-0.5
1,241,496	+		HGI48_RS05870	0.37	-1.3
1,241,497	-		HGI48_RS05870	0.37	-1.3