Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05735 and HGI48_RS05740 are separated by 294 nucleotides HGI48_RS05740 and HGI48_RS05745 are separated by 42 nucleotides HGI48_RS05745 and HGI48_RS05750 are separated by 101 nucleotides
HGI48_RS05735: HGI48_RS05735 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 1,210,217 to 1,212,010
_RS05735
HGI48_RS05740: HGI48_RS05740 - P-II family nitrogen regulator, at 1,212,305 to 1,212,643
_RS05740
HGI48_RS05745: HGI48_RS05745 - ammonium transporter AmtB, at 1,212,686 to 1,213,978
_RS05745
HGI48_RS05750: HGI48_RS05750 - acyl-CoA thioesterase II, at 1,214,080 to 1,214,943
_RS05750
Position (kb) 1212
1213
1214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1211.828 kb on - strand, within HGI48_RS05735 at 1211.921 kb on + strand at 1211.921 kb on + strand at 1211.930 kb on + strand at 1211.930 kb on + strand at 1211.930 kb on + strand at 1211.931 kb on - strand at 1211.931 kb on - strand at 1211.931 kb on - strand at 1211.931 kb on - strand at 1211.931 kb on - strand at 1211.931 kb on - strand at 1211.994 kb on + strand at 1212.040 kb on + strand at 1212.040 kb on + strand at 1212.040 kb on + strand at 1212.041 kb on - strand at 1212.145 kb on + strand at 1212.145 kb on + strand at 1212.145 kb on + strand at 1212.146 kb on - strand at 1212.146 kb on - strand at 1212.153 kb on - strand at 1212.171 kb on - strand at 1212.191 kb on + strand at 1212.247 kb on + strand at 1212.248 kb on - strand at 1212.248 kb on - strand at 1212.253 kb on + strand at 1212.253 kb on + strand at 1212.253 kb on + strand at 1212.253 kb on + strand at 1212.254 kb on - strand at 1212.254 kb on - strand at 1212.254 kb on - strand at 1212.254 kb on - strand at 1212.254 kb on - strand at 1212.284 kb on + strand at 1212.284 kb on + strand at 1212.285 kb on - strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.288 kb on + strand at 1212.289 kb on - strand at 1212.289 kb on - strand at 1212.289 kb on - strand at 1212.289 kb on - strand at 1212.289 kb on - strand at 1212.289 kb on - strand at 1212.292 kb on + strand at 1212.292 kb on + strand at 1212.293 kb on - strand at 1212.329 kb on - strand at 1212.351 kb on + strand, within HGI48_RS05740 at 1212.351 kb on + strand, within HGI48_RS05740 at 1212.351 kb on + strand, within HGI48_RS05740 at 1212.351 kb on + strand, within HGI48_RS05740 at 1212.351 kb on + strand, within HGI48_RS05740 at 1212.352 kb on - strand, within HGI48_RS05740 at 1212.352 kb on - strand, within HGI48_RS05740 at 1212.441 kb on - strand at 1212.455 kb on + strand, within HGI48_RS05740 at 1212.456 kb on - strand, within HGI48_RS05740 at 1212.538 kb on + strand, within HGI48_RS05740 at 1212.538 kb on + strand, within HGI48_RS05740 at 1212.538 kb on + strand, within HGI48_RS05740 at 1212.538 kb on + strand, within HGI48_RS05740 at 1212.539 kb on - strand, within HGI48_RS05740 at 1212.539 kb on - strand, within HGI48_RS05740 at 1212.548 kb on + strand, within HGI48_RS05740 at 1212.556 kb on + strand, within HGI48_RS05740 at 1212.639 kb on + strand at 1212.639 kb on + strand at 1212.639 kb on + strand at 1212.639 kb on + strand at 1212.639 kb on + strand at 1212.640 kb on - strand at 1212.640 kb on - strand at 1212.641 kb on + strand at 1212.641 kb on + strand at 1212.641 kb on + strand at 1212.641 kb on + strand at 1212.648 kb on + strand at 1212.649 kb on - strand at 1212.657 kb on + strand at 1212.657 kb on + strand at 1212.657 kb on + strand at 1212.658 kb on - strand at 1212.663 kb on + strand at 1212.663 kb on + strand at 1212.663 kb on + strand at 1212.666 kb on + strand at 1212.666 kb on + strand at 1212.666 kb on + strand at 1212.666 kb on + strand at 1212.667 kb on - strand at 1212.667 kb on - strand at 1212.667 kb on - strand at 1212.670 kb on + strand at 1212.670 kb on + strand at 1212.708 kb on + strand at 1212.708 kb on + strand at 1212.708 kb on + strand at 1212.709 kb on - strand at 1212.806 kb on - strand at 1212.941 kb on + strand, within HGI48_RS05745 at 1212.941 kb on + strand, within HGI48_RS05745 at 1212.942 kb on - strand, within HGI48_RS05745 at 1212.942 kb on - strand, within HGI48_RS05745 at 1212.942 kb on - strand at 1213.019 kb on - strand, within HGI48_RS05745 at 1213.019 kb on - strand, within HGI48_RS05745 at 1213.036 kb on + strand, within HGI48_RS05745 at 1213.043 kb on + strand, within HGI48_RS05745 at 1213.065 kb on - strand, within HGI48_RS05745 at 1213.123 kb on + strand, within HGI48_RS05745 at 1213.124 kb on - strand, within HGI48_RS05745 at 1213.124 kb on - strand, within HGI48_RS05745 at 1213.175 kb on + strand, within HGI48_RS05745 at 1213.175 kb on + strand, within HGI48_RS05745 at 1213.254 kb on + strand, within HGI48_RS05745 at 1213.254 kb on + strand, within HGI48_RS05745 at 1213.255 kb on - strand at 1213.360 kb on - strand, within HGI48_RS05745 at 1213.382 kb on + strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.383 kb on - strand, within HGI48_RS05745 at 1213.435 kb on - strand, within HGI48_RS05745 at 1213.659 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand at 1213.728 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand at 1213.728 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand at 1213.728 kb on + strand, within HGI48_RS05745 at 1213.728 kb on + strand at 1213.729 kb on - strand, within HGI48_RS05745 at 1213.799 kb on - strand, within HGI48_RS05745 at 1213.812 kb on + strand, within HGI48_RS05745 at 1213.812 kb on + strand, within HGI48_RS05745 at 1213.848 kb on + strand, within HGI48_RS05745 at 1213.848 kb on + strand, within HGI48_RS05745 at 1213.848 kb on + strand, within HGI48_RS05745 at 1213.849 kb on - strand at 1213.849 kb on - strand at 1213.891 kb on + strand at 1213.891 kb on + strand at 1213.891 kb on + strand at 1213.892 kb on - strand at 1213.892 kb on - strand at 1213.967 kb on + strand at 1213.976 kb on + strand at 1213.976 kb on + strand at 1213.984 kb on + strand at 1213.985 kb on - strand at 1214.081 kb on + strand at 1214.147 kb on + strand at 1214.147 kb on + strand at 1214.147 kb on + strand at 1214.147 kb on + strand at 1214.148 kb on - strand at 1214.148 kb on - strand at 1214.148 kb on - strand at 1214.148 kb on - strand at 1214.148 kb on - strand at 1214.148 kb on - strand at 1214.204 kb on + strand, within HGI48_RS05750 at 1214.204 kb on + strand, within HGI48_RS05750 at 1214.204 kb on + strand, within HGI48_RS05750 at 1214.275 kb on - strand, within HGI48_RS05750 at 1214.340 kb on + strand at 1214.340 kb on + strand, within HGI48_RS05750 at 1214.340 kb on + strand, within HGI48_RS05750 at 1214.341 kb on - strand, within HGI48_RS05750 at 1214.341 kb on - strand, within HGI48_RS05750 at 1214.343 kb on - strand, within HGI48_RS05750 at 1214.354 kb on + strand, within HGI48_RS05750 at 1214.355 kb on - strand, within HGI48_RS05750 at 1214.355 kb on - strand at 1214.355 kb on - strand, within HGI48_RS05750 at 1214.355 kb on - strand, within HGI48_RS05750 at 1214.404 kb on + strand at 1214.404 kb on + strand, within HGI48_RS05750 at 1214.404 kb on + strand, within HGI48_RS05750 at 1214.404 kb on + strand, within HGI48_RS05750 at 1214.405 kb on - strand, within HGI48_RS05750 at 1214.405 kb on - strand, within HGI48_RS05750 at 1214.527 kb on - strand, within HGI48_RS05750 at 1214.634 kb on + strand, within HGI48_RS05750 at 1214.634 kb on + strand, within HGI48_RS05750 at 1214.634 kb on + strand, within HGI48_RS05750 at 1214.635 kb on - strand, within HGI48_RS05750 at 1214.635 kb on - strand, within HGI48_RS05750 at 1214.635 kb on - strand, within HGI48_RS05750 at 1214.636 kb on + strand, within HGI48_RS05750 at 1214.637 kb on - strand, within HGI48_RS05750 at 1214.692 kb on - strand, within HGI48_RS05750 at 1214.717 kb on + strand, within HGI48_RS05750 at 1214.717 kb on + strand, within HGI48_RS05750 at 1214.717 kb on + strand at 1214.756 kb on + strand, within HGI48_RS05750 at 1214.757 kb on - strand, within HGI48_RS05750 at 1214.757 kb on - strand, within HGI48_RS05750 at 1214.757 kb on - strand, within HGI48_RS05750 at 1214.757 kb on - strand, within HGI48_RS05750 at 1214.909 kb on - strand at 1214.929 kb on + strand at 1214.929 kb on + strand at 1214.943 kb on + strand at 1214.943 kb on + strand at 1214.944 kb on - strand at 1214.944 kb on - strand at 1214.947 kb on + strand at 1214.947 kb on + strand at 1214.947 kb on + strand at 1214.948 kb on - strand at 1214.948 kb on - strand at 1214.948 kb on - strand at 1214.948 kb on - strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.963 kb on + strand at 1214.964 kb on - strand at 1214.968 kb on - strand at 1214.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,211,828 - HGI48_RS05735 0.90 -0.5 1,211,921 + -1.1 1,211,921 + -0.9 1,211,930 + -1.9 1,211,930 + -0.4 1,211,930 + -1.2 1,211,931 - +0.7 1,211,931 - -1.3 1,211,931 - -1.6 1,211,931 - +0.1 1,211,931 - +0.7 1,211,931 - +0.7 1,211,994 + +0.5 1,212,040 + -0.3 1,212,040 + +0.1 1,212,040 + -0.4 1,212,041 - -1.1 1,212,145 + -1.6 1,212,145 + -0.9 1,212,145 + -2.1 1,212,146 - -2.3 1,212,146 - -1.3 1,212,153 - -1.0 1,212,171 - -0.3 1,212,191 + +0.6 1,212,247 + -0.3 1,212,248 - -2.2 1,212,248 - -0.0 1,212,253 + +1.0 1,212,253 + -0.8 1,212,253 + +0.3 1,212,253 + +1.2 1,212,254 - +1.3 1,212,254 - -0.0 1,212,254 - -1.1 1,212,254 - -1.1 1,212,254 - +0.7 1,212,284 + -1.1 1,212,284 + -1.3 1,212,285 - -0.1 1,212,288 + +2.0 1,212,288 + -0.5 1,212,288 + +0.4 1,212,288 + -0.6 1,212,288 + -0.7 1,212,288 + -0.4 1,212,288 + -0.6 1,212,288 + -1.4 1,212,289 - +0.7 1,212,289 - -1.3 1,212,289 - -0.1 1,212,289 - -0.1 1,212,289 - -0.7 1,212,289 - +0.5 1,212,292 + +0.9 1,212,292 + +0.9 1,212,293 - -1.1 1,212,329 - -0.3 1,212,351 + HGI48_RS05740 0.14 -1.6 1,212,351 + HGI48_RS05740 0.14 -0.1 1,212,351 + HGI48_RS05740 0.14 +2.3 1,212,351 + HGI48_RS05740 0.14 -0.9 1,212,351 + HGI48_RS05740 0.14 -1.0 1,212,352 - HGI48_RS05740 0.14 +2.6 1,212,352 - HGI48_RS05740 0.14 +1.0 1,212,441 - -0.9 1,212,455 + HGI48_RS05740 0.44 +0.3 1,212,456 - HGI48_RS05740 0.45 +0.4 1,212,538 + HGI48_RS05740 0.69 +0.2 1,212,538 + HGI48_RS05740 0.69 -1.1 1,212,538 + HGI48_RS05740 0.69 -1.0 1,212,538 + HGI48_RS05740 0.69 -1.6 1,212,539 - HGI48_RS05740 0.69 +1.9 1,212,539 - HGI48_RS05740 0.69 -2.3 1,212,548 + HGI48_RS05740 0.72 +0.0 1,212,556 + HGI48_RS05740 0.74 -0.3 1,212,639 + -1.7 1,212,639 + -0.7 1,212,639 + -0.3 1,212,639 + +0.5 1,212,639 + -1.3 1,212,640 - +0.4 1,212,640 - -0.6 1,212,641 + -2.1 1,212,641 + +0.4 1,212,641 + -0.7 1,212,641 + -1.3 1,212,648 + -0.7 1,212,649 - +0.4 1,212,657 + -0.3 1,212,657 + -0.3 1,212,657 + -0.7 1,212,658 - -0.1 1,212,663 + -0.3 1,212,663 + +0.4 1,212,663 + +2.1 1,212,666 + +1.1 1,212,666 + -0.5 1,212,666 + -0.9 1,212,666 + +1.3 1,212,667 - -0.3 1,212,667 - -2.4 1,212,667 - -1.3 1,212,670 + +0.2 1,212,670 + -1.4 1,212,708 + +0.7 1,212,708 + +1.5 1,212,708 + -0.3 1,212,709 - -1.4 1,212,806 - +0.7 1,212,941 + HGI48_RS05745 0.20 -2.3 1,212,941 + HGI48_RS05745 0.20 -0.4 1,212,942 - HGI48_RS05745 0.20 -0.7 1,212,942 - HGI48_RS05745 0.20 -0.4 1,212,942 - +1.3 1,213,019 - HGI48_RS05745 0.26 +0.3 1,213,019 - HGI48_RS05745 0.26 -1.3 1,213,036 + HGI48_RS05745 0.27 -2.6 1,213,043 + HGI48_RS05745 0.28 +0.1 1,213,065 - HGI48_RS05745 0.29 +1.3 1,213,123 + HGI48_RS05745 0.34 -0.7 1,213,124 - HGI48_RS05745 0.34 +1.4 1,213,124 - HGI48_RS05745 0.34 +0.7 1,213,175 + HGI48_RS05745 0.38 +0.2 1,213,175 + HGI48_RS05745 0.38 -1.4 1,213,254 + HGI48_RS05745 0.44 -1.3 1,213,254 + HGI48_RS05745 0.44 -1.9 1,213,255 - +0.1 1,213,360 - HGI48_RS05745 0.52 -0.5 1,213,382 + HGI48_RS05745 0.54 -0.9 1,213,383 - HGI48_RS05745 0.54 +0.3 1,213,383 - HGI48_RS05745 0.54 +0.6 1,213,383 - HGI48_RS05745 0.54 -0.1 1,213,383 - HGI48_RS05745 0.54 -0.0 1,213,383 - HGI48_RS05745 0.54 +0.8 1,213,383 - HGI48_RS05745 0.54 +2.0 1,213,383 - HGI48_RS05745 0.54 -0.3 1,213,435 - HGI48_RS05745 0.58 +1.0 1,213,659 + HGI48_RS05745 0.75 -0.3 1,213,728 + +1.7 1,213,728 + HGI48_RS05745 0.81 -1.3 1,213,728 + HGI48_RS05745 0.81 +1.2 1,213,728 + -0.9 1,213,728 + HGI48_RS05745 0.81 -2.3 1,213,728 + HGI48_RS05745 0.81 -1.9 1,213,728 + -0.3 1,213,728 + HGI48_RS05745 0.81 -0.7 1,213,728 + +0.7 1,213,729 - HGI48_RS05745 0.81 +0.4 1,213,799 - HGI48_RS05745 0.86 -1.4 1,213,812 + HGI48_RS05745 0.87 -1.6 1,213,812 + HGI48_RS05745 0.87 -0.6 1,213,848 + HGI48_RS05745 0.90 -0.2 1,213,848 + HGI48_RS05745 0.90 -0.3 1,213,848 + HGI48_RS05745 0.90 -0.3 1,213,849 - +1.1 1,213,849 - -0.4 1,213,891 + -1.9 1,213,891 + -0.0 1,213,891 + +1.4 1,213,892 - -1.1 1,213,892 - +0.7 1,213,967 + -0.4 1,213,976 + -1.6 1,213,976 + -0.1 1,213,984 + -0.0 1,213,985 - -1.3 1,214,081 + -0.3 1,214,147 + -1.3 1,214,147 + +0.2 1,214,147 + -1.0 1,214,147 + -2.1 1,214,148 - +0.4 1,214,148 - +0.7 1,214,148 - +0.7 1,214,148 - +0.9 1,214,148 - -1.3 1,214,148 - +0.1 1,214,204 + HGI48_RS05750 0.14 -1.1 1,214,204 + HGI48_RS05750 0.14 +0.7 1,214,204 + HGI48_RS05750 0.14 +0.2 1,214,275 - HGI48_RS05750 0.23 -2.6 1,214,340 + -0.9 1,214,340 + HGI48_RS05750 0.30 -1.3 1,214,340 + HGI48_RS05750 0.30 -0.9 1,214,341 - HGI48_RS05750 0.30 -1.1 1,214,341 - HGI48_RS05750 0.30 -0.3 1,214,343 - HGI48_RS05750 0.30 -0.9 1,214,354 + HGI48_RS05750 0.32 -1.6 1,214,355 - HGI48_RS05750 0.32 +1.2 1,214,355 - +0.7 1,214,355 - HGI48_RS05750 0.32 -1.5 1,214,355 - HGI48_RS05750 0.32 +0.4 1,214,404 + +0.1 1,214,404 + HGI48_RS05750 0.38 +0.1 1,214,404 + HGI48_RS05750 0.38 -2.1 1,214,404 + HGI48_RS05750 0.38 -0.3 1,214,405 - HGI48_RS05750 0.38 -0.6 1,214,405 - HGI48_RS05750 0.38 -0.7 1,214,527 - HGI48_RS05750 0.52 -1.9 1,214,634 + HGI48_RS05750 0.64 -1.7 1,214,634 + HGI48_RS05750 0.64 +0.1 1,214,634 + HGI48_RS05750 0.64 +1.1 1,214,635 - HGI48_RS05750 0.64 -0.1 1,214,635 - HGI48_RS05750 0.64 -2.1 1,214,635 - HGI48_RS05750 0.64 +0.7 1,214,636 + HGI48_RS05750 0.64 -0.4 1,214,637 - HGI48_RS05750 0.64 +0.7 1,214,692 - HGI48_RS05750 0.71 +0.7 1,214,717 + HGI48_RS05750 0.74 +0.1 1,214,717 + HGI48_RS05750 0.74 -0.0 1,214,717 + +0.7 1,214,756 + HGI48_RS05750 0.78 +0.1 1,214,757 - HGI48_RS05750 0.78 -0.0 1,214,757 - HGI48_RS05750 0.78 +0.2 1,214,757 - HGI48_RS05750 0.78 -1.6 1,214,757 - HGI48_RS05750 0.78 -0.3 1,214,909 - -1.1 1,214,929 + -0.9 1,214,929 + -1.6 1,214,943 + +0.4 1,214,943 + +1.6 1,214,944 - +0.2 1,214,944 - -0.3 1,214,947 + -0.1 1,214,947 + +1.5 1,214,947 + -2.3 1,214,948 - -0.8 1,214,948 - +1.0 1,214,948 - +0.7 1,214,948 - +0.7 1,214,963 + -2.1 1,214,963 + -1.9 1,214,963 + +1.2 1,214,963 + +1.0 1,214,963 + -1.1 1,214,963 + -1.5 1,214,963 + +0.7 1,214,963 + -0.9 1,214,964 - -0.6 1,214,968 - +0.3 1,214,968 - -0.7
Or see this region's nucleotide sequence