Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05000

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,048,985	+		HGI48_RS04995	0.79	-0.3
1,048,985	+		HGI48_RS04995	0.79	-0.5
1,048,985	+				-0.3
1,048,986	-				+1.5
1,048,986	-		HGI48_RS04995	0.79	-0.1
1,048,986	-		HGI48_RS04995	0.79	-1.6
1,048,986	-		HGI48_RS04995	0.79	-1.3
1,048,986	-		HGI48_RS04995	0.79	+1.0
1,048,986	-		HGI48_RS04995	0.79	-0.6
1,048,986	-		HGI48_RS04995	0.79	-2.1
1,048,987	+		HGI48_RS04995	0.79	-0.5
1,049,000	+		HGI48_RS04995	0.79	+0.0
1,049,024	+		HGI48_RS04995	0.80	-2.6
1,049,025	-		HGI48_RS04995	0.80	-0.7
1,049,025	-		HGI48_RS04995	0.80	-0.3
1,049,030	-		HGI48_RS04995	0.80	+1.1
1,049,030	-		HGI48_RS04995	0.80	+1.2
1,049,046	+		HGI48_RS04995	0.81	-2.5
1,049,046	+		HGI48_RS04995	0.81	+0.2
1,049,046	+		HGI48_RS04995	0.81	-0.0
1,049,046	+				-0.9
1,049,046	+				+1.7
1,049,047	-		HGI48_RS04995	0.81	-0.6
1,049,180	+		HGI48_RS04995	0.85	-0.3
1,049,180	+		HGI48_RS04995	0.85	-0.3
1,049,181	-		HGI48_RS04995	0.85	-0.0
1,049,181	-		HGI48_RS04995	0.85	-3.0
1,049,187	-		HGI48_RS04995	0.86	-0.0
1,049,187	-		HGI48_RS04995	0.86	-0.3
1,049,263	+		HGI48_RS04995	0.88	+0.9
1,049,263	+		HGI48_RS04995	0.88	-1.6
1,049,263	+		HGI48_RS04995	0.88	-1.3
1,049,264	-		HGI48_RS04995	0.88	-0.5
1,049,264	-		HGI48_RS04995	0.88	+0.3
1,049,398	+				-0.6
1,049,398	+				-1.6
1,049,439	+				+2.5
1,049,439	+				+0.3
1,049,440	-				+1.3
1,049,440	-				-0.3
1,049,440	-				-0.3
1,049,501	+				+0.1
1,049,528	+				-1.3
1,049,528	+				+0.9
1,049,528	+				-1.1
1,049,528	+				+2.9
1,049,529	-				-1.3
1,049,529	-				-1.5
1,049,529	-				+0.7
1,049,529	-				-1.1
1,049,529	-				-1.1
1,049,600	+				-1.6
1,049,601	-				+0.0
1,049,601	-				+0.5
1,049,675	-				-1.6
1,049,675	-				-1.0
1,049,675	-				-0.7
1,049,675	-				-0.3
1,049,717	+				+0.5
1,049,717	+				-0.3
1,049,718	-				-1.6
1,049,718	-				-0.4
1,049,718	-				-0.9
1,049,725	+				-1.9
1,049,739	+				+0.7
1,049,739	+				-1.6
1,049,740	-				-1.3
1,049,767	+				+0.7
1,049,767	+				-0.0
1,049,767	+				-1.6
1,049,767	+				+0.9
1,049,767	+				+1.5
1,049,768	-				-2.3
1,049,768	-				-0.3
1,049,768	-				-0.2
1,049,768	-				+0.4
1,049,781	+				+0.1
1,049,781	+				-0.9
1,049,781	+				+2.5
1,049,782	-				-0.6
1,049,782	-				+0.0
1,049,782	-				+0.7
1,049,782	-				-0.1
1,049,782	-				-0.9
1,049,782	-				-0.0
1,049,782	-				-0.3
1,049,782	-				+0.9
1,049,795	+				-0.9
1,049,795	+				-0.5
1,049,795	+				-0.1
1,049,795	+				+0.6
1,049,795	+				-2.1
1,049,831	+				-0.1
1,049,832	-				+0.1
1,049,832	-				-1.3
1,049,832	-				+1.3
1,049,837	+				-0.2
1,049,837	+				+1.7
1,049,837	+				-2.3
1,049,837	+				-0.3
1,049,838	-				+0.5
1,049,838	-				-0.7
1,049,838	-				+1.0
1,049,838	-				-0.6
1,049,970	+		HGI48_RS05000	0.13	-0.0
1,050,121	+		HGI48_RS05000	0.24	+0.6
1,050,121	+				+2.3
1,050,122	-		HGI48_RS05000	0.24	-1.9
1,050,253	+		HGI48_RS05000	0.34	+0.1
1,050,253	+				+1.7
1,050,253	+				+0.1
1,050,254	-		HGI48_RS05000	0.34	-0.7
1,050,254	-		HGI48_RS05000	0.34	-0.1
1,050,254	-		HGI48_RS05000	0.34	+0.3
1,050,254	-		HGI48_RS05000	0.34	+1.0
1,050,254	-		HGI48_RS05000	0.34	-1.3
1,050,254	-				+2.3
1,050,254	-		HGI48_RS05000	0.34	-0.3
1,050,254	-		HGI48_RS05000	0.34	-0.3
1,050,314	+		HGI48_RS05000	0.39	-1.6
1,050,315	-		HGI48_RS05000	0.39	+0.0
1,050,338	-		HGI48_RS05000	0.40	-0.9
1,050,393	+		HGI48_RS05000	0.45	-0.1
1,050,393	+		HGI48_RS05000	0.45	-0.7
1,050,394	-		HGI48_RS05000	0.45	+0.3
1,050,394	-		HGI48_RS05000	0.45	-0.5
1,050,394	-		HGI48_RS05000	0.45	-1.1
1,050,394	-		HGI48_RS05000	0.45	+0.1
1,050,395	+		HGI48_RS05000	0.45	+1.9
1,050,395	+		HGI48_RS05000	0.45	+0.3
1,050,395	+		HGI48_RS05000	0.45	-2.8
1,050,395	+				-0.3
1,050,396	-				+1.5
1,050,396	-		HGI48_RS05000	0.45	+0.3
1,050,462	+		HGI48_RS05000	0.50	+0.5
1,050,462	+		HGI48_RS05000	0.50	+3.0
1,050,462	+				-0.9
1,050,463	-		HGI48_RS05000	0.50	-1.4
1,050,463	-		HGI48_RS05000	0.50	-0.3
1,050,567	+				+0.1
1,050,568	-		HGI48_RS05000	0.58	-0.9
1,050,568	-		HGI48_RS05000	0.58	-1.3
1,050,657	+		HGI48_RS05000	0.64	-0.0
1,050,683	+		HGI48_RS05000	0.66	+0.8
1,050,684	-		HGI48_RS05000	0.66	-1.3
1,050,768	+		HGI48_RS05000	0.72	-0.7
1,050,890	+				+1.7
1,050,935	+		HGI48_RS05000	0.85	+0.5
1,050,963	+		HGI48_RS05000	0.87	-0.3
1,050,963	+		HGI48_RS05000	0.87	+0.7
1,050,968	-		HGI48_RS05000	0.87	-2.1
1,051,067	+				-1.3
1,051,067	+				-0.0
1,051,067	+				+0.2
1,051,067	+				+0.1
1,051,068	-				-0.5
1,051,068	-				-0.9
1,051,068	-				-0.2
1,051,068	-				-1.9
1,051,068	-				-0.9
1,051,068	-				-0.1
1,051,068	-				-0.0
1,051,068	-				-2.6
1,051,104	+				-0.0
1,051,104	+				-0.8
1,051,104	+				-0.5
1,051,105	-				-2.1
1,051,107	+				+0.3
1,051,107	+				-0.3
1,051,107	+				+0.1
1,051,107	+				+0.3
1,051,107	+				+1.3
1,051,107	+				-0.9
1,051,107	+				-1.0
1,051,107	+				-1.2
1,051,107	+				-0.3
1,051,107	+				-0.1
1,051,107	+				-1.3
1,051,107	+				-1.9
1,051,108	-				+1.1
1,051,108	-				-0.1
1,051,108	-				-1.9
1,051,162	+				-0.3
1,051,211	+				+1.0
1,051,211	+				-0.2
1,051,217	-				+0.3
1,051,217	-				-1.6
1,051,217	-				-0.5
1,051,218	-				-2.2
1,051,230	+				-1.3
1,051,248	-				+0.7
1,051,381	+				-1.3
1,051,382	-				+0.9
1,051,385	-				-0.4
1,051,416	-				-2.6
1,051,483	-		HGI48_RS05005	0.11	-0.1
1,051,483	-		HGI48_RS05005	0.11	-1.6
1,051,483	-		HGI48_RS05005	0.11	-0.9
1,051,521	+		HGI48_RS05005	0.14	-2.7
1,051,521	+		HGI48_RS05005	0.14	-1.6
1,051,521	+		HGI48_RS05005	0.14	-1.9
1,051,521	+		HGI48_RS05005	0.14	-0.6
1,051,522	-				+1.3
1,051,522	-		HGI48_RS05005	0.14	-0.7
1,051,522	-		HGI48_RS05005	0.14	+0.3
1,051,670	+		HGI48_RS05005	0.26	-0.3
1,051,670	+		HGI48_RS05005	0.26	+0.7
1,051,671	-		HGI48_RS05005	0.26	-1.4
1,051,671	-		HGI48_RS05005	0.26	-0.1
1,051,693	+		HGI48_RS05005	0.28	-1.3
1,051,722	-		HGI48_RS05005	0.31	+0.3
1,051,788	+		HGI48_RS05005	0.36	+0.1
1,051,830	+		HGI48_RS05005	0.39	+0.9
1,051,830	+		HGI48_RS05005	0.39	+0.2
1,051,830	+		HGI48_RS05005	0.39	-0.6
1,051,830	+				+2.3
1,051,830	+		HGI48_RS05005	0.39	-0.3
1,051,830	+		HGI48_RS05005	0.39	-0.3
1,051,835	+		HGI48_RS05005	0.40	+0.7
1,051,835	+		HGI48_RS05005	0.40	+1.0
1,052,046	+		HGI48_RS05005	0.57	+0.9
1,052,046	+				+0.1
1,052,046	+		HGI48_RS05005	0.57	-0.1
1,052,046	+		HGI48_RS05005	0.57	+0.3
1,052,046	+		HGI48_RS05005	0.57	+1.0
1,052,046	+		HGI48_RS05005	0.57	-1.8
1,052,046	+		HGI48_RS05005	0.57	-1.3
1,052,047	-		HGI48_RS05005	0.57	-0.1
1,052,047	-		HGI48_RS05005	0.57	+1.1
1,052,047	-		HGI48_RS05005	0.57	-0.9
1,052,047	-		HGI48_RS05005	0.57	-0.0
1,052,086	+		HGI48_RS05005	0.60	+0.7
1,052,086	+		HGI48_RS05005	0.60	-0.5
1,052,086	+		HGI48_RS05005	0.60	-1.3
1,052,086	+		HGI48_RS05005	0.60	-2.3