Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04285

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04270 and HGI48_RS04275 overlap by 4 nucleotidesHGI48_RS04275 and HGI48_RS04280 are separated by 1 nucleotidesHGI48_RS04280 and HGI48_RS04285 are separated by 202 nucleotidesHGI48_RS04285 and HGI48_RS04290 are separated by 76 nucleotides HGI48_RS04270: HGI48_RS04270 - hypothetical protein, at 897,026 to 897,436 _RS04270 HGI48_RS04275: HGI48_RS04275 - hypothetical protein, at 897,433 to 897,669 _RS04275 HGI48_RS04280: HGI48_RS04280 - hypothetical protein, at 897,671 to 898,135 _RS04280 HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083 _RS04285 HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380 _RS04290 Position (kb) 898 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2 3at 897.360 kb on + strandat 897.648 kb on + strandat 897.751 kb on - strand, within HGI48_RS04280at 897.872 kb on - strand, within HGI48_RS04280at 898.149 kb on + strandat 898.183 kb on + strandat 898.214 kb on + strandat 898.249 kb on + strandat 898.270 kb on - strandat 898.291 kb on - strandat 898.304 kb on + strandat 898.311 kb on - strandat 898.341 kb on + strandat 898.419 kb on + strandat 898.420 kb on - strandat 898.426 kb on - strandat 898.467 kb on - strandat 898.516 kb on - strand, within HGI48_RS04285at 898.716 kb on - strand, within HGI48_RS04285at 898.716 kb on - strand, within HGI48_RS04285at 898.872 kb on - strand, within HGI48_RS04285at 899.025 kb on + strand, within HGI48_RS04285at 899.029 kb on + strand, within HGI48_RS04285at 899.188 kb on - strandat 899.244 kb on + strandat 899.563 kb on - strand, within HGI48_RS04285at 899.570 kb on - strand, within HGI48_RS04285at 899.681 kb on + strand, within HGI48_RS04285at 899.765 kb on + strand, within HGI48_RS04285at 899.793 kb on + strand, within HGI48_RS04285at 899.826 kb on - strandat 899.829 kb on + strand, within HGI48_RS04285at 899.830 kb on - strand, within HGI48_RS04285at 900.023 kb on + strandat 900.024 kb on - strandat 900.142 kb on - strandat 900.158 kb on + strandat 900.239 kb on + strandat 900.240 kb on - strandat 900.240 kb on - strandat 900.255 kb on - strandat 900.351 kb on + strand, within HGI48_RS04290at 900.351 kb on + strand, within HGI48_RS04290at 900.361 kb on - strand, within HGI48_RS04290at 900.411 kb on + strand, within HGI48_RS04290at 900.429 kb on + strand, within HGI48_RS04290at 900.430 kb on - strand, within HGI48_RS04290at 900.430 kb on - strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.504 kb on + strand, within HGI48_RS04290at 900.505 kb on - strand, within HGI48_RS04290at 900.505 kb on - strand, within HGI48_RS04290at 900.510 kb on + strand, within HGI48_RS04290at 900.511 kb on - strand, within HGI48_RS04290at 900.511 kb on - strand, within HGI48_RS04290at 900.646 kb on + strandat 900.647 kb on - strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strandat 900.666 kb on + strand, within HGI48_RS04290at 900.666 kb on + strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strandat 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.667 kb on - strand, within HGI48_RS04290at 900.682 kb on + strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.683 kb on - strand, within HGI48_RS04290at 900.685 kb on - strand, within HGI48_RS04290at 900.718 kb on + strand, within HGI48_RS04290at 900.718 kb on + strandat 900.719 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.805 kb on - strand, within HGI48_RS04290at 900.854 kb on - strand, within HGI48_RS04290at 900.919 kb on - strand, within HGI48_RS04290at 900.933 kb on + strandat 900.933 kb on + strand, within HGI48_RS04290at 900.955 kb on - strandat 900.988 kb on - strand, within HGI48_RS04290at 900.993 kb on + strandat 901.010 kb on - strand, within HGI48_RS04290

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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897,360 + -0.8
897,648 + +0.9
897,751 - HGI48_RS04280 0.17 -2.3
897,872 - HGI48_RS04280 0.43 +0.3
898,149 + +0.3
898,183 + -0.8
898,214 + -2.0
898,249 + +0.1
898,270 - -0.7
898,291 - -2.4
898,304 + -1.8
898,311 - -0.2
898,341 + -0.0
898,419 + +0.0
898,420 - -0.1
898,426 - +0.2
898,467 - +0.3
898,516 - HGI48_RS04285 0.10 +0.0
898,716 - HGI48_RS04285 0.22 -1.7
898,716 - HGI48_RS04285 0.22 +0.3
898,872 - HGI48_RS04285 0.31 -0.1
899,025 + HGI48_RS04285 0.39 -0.3
899,029 + HGI48_RS04285 0.40 +0.5
899,188 - +0.2
899,244 + +0.2
899,563 - HGI48_RS04285 0.70 -2.4
899,570 - HGI48_RS04285 0.71 +0.4
899,681 + HGI48_RS04285 0.77 +1.5
899,765 + HGI48_RS04285 0.82 +0.7
899,793 + HGI48_RS04285 0.83 -0.6
899,826 - -0.8
899,829 + HGI48_RS04285 0.85 +0.2
899,830 - HGI48_RS04285 0.85 -2.1
900,023 + +0.3
900,024 - -0.8
900,142 - -1.1
900,158 + -1.1
900,239 + +0.5
900,240 - -0.6
900,240 - -0.3
900,255 - +0.5
900,351 + HGI48_RS04290 0.16 -1.8
900,351 + HGI48_RS04290 0.16 -1.6
900,361 - HGI48_RS04290 0.16 +0.3
900,411 + HGI48_RS04290 0.21 -2.7
900,429 + HGI48_RS04290 0.22 +0.3
900,430 - HGI48_RS04290 0.22 -1.3
900,430 - HGI48_RS04290 0.22 +0.5
900,504 + HGI48_RS04290 0.28 +0.2
900,504 + HGI48_RS04290 0.28 -0.8
900,504 + HGI48_RS04290 0.28 -2.6
900,505 - HGI48_RS04290 0.28 +0.1
900,505 - HGI48_RS04290 0.28 -2.1
900,510 + HGI48_RS04290 0.29 -0.2
900,511 - HGI48_RS04290 0.29 +0.9
900,511 - HGI48_RS04290 0.29 +0.4
900,646 + +1.3
900,647 - HGI48_RS04290 0.40 +1.5
900,666 + HGI48_RS04290 0.41 +0.3
900,666 + HGI48_RS04290 0.41 -0.4
900,666 + HGI48_RS04290 0.41 -0.6
900,666 + HGI48_RS04290 0.41 -0.4
900,666 + HGI48_RS04290 0.41 +0.0
900,666 + HGI48_RS04290 0.41 -0.3
900,666 + HGI48_RS04290 0.41 -0.1
900,666 + HGI48_RS04290 0.41 -0.6
900,666 + HGI48_RS04290 0.41 -1.1
900,666 + +0.2
900,666 + HGI48_RS04290 0.41 -0.3
900,666 + HGI48_RS04290 0.41 -0.3
900,667 - HGI48_RS04290 0.42 -0.0
900,667 - HGI48_RS04290 0.42 -0.6
900,667 - HGI48_RS04290 0.42 -0.4
900,667 - HGI48_RS04290 0.42 -0.3
900,667 - -0.3
900,667 - HGI48_RS04290 0.42 -1.6
900,667 - HGI48_RS04290 0.42 -0.6
900,667 - HGI48_RS04290 0.42 +1.3
900,682 + HGI48_RS04290 0.43 +0.2
900,683 - HGI48_RS04290 0.43 -1.1
900,683 - HGI48_RS04290 0.43 +1.2
900,683 - HGI48_RS04290 0.43 -0.8
900,683 - HGI48_RS04290 0.43 -1.3
900,685 - HGI48_RS04290 0.43 +1.0
900,718 + HGI48_RS04290 0.46 +1.0
900,718 + +2.9
900,719 - HGI48_RS04290 0.46 -1.6
900,805 - HGI48_RS04290 0.53 +1.3
900,805 - HGI48_RS04290 0.53 +0.9
900,805 - HGI48_RS04290 0.53 -0.5
900,854 - HGI48_RS04290 0.57 -1.6
900,919 - HGI48_RS04290 0.62 -0.2
900,933 + -0.8
900,933 + HGI48_RS04290 0.63 -0.3
900,955 - +0.7
900,988 - HGI48_RS04290 0.68 -0.5
900,993 + -0.8
901,010 - HGI48_RS04290 0.70 +0.1

Or see this region's nucleotide sequence