Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03610 and HGI48_RS03615 overlap by 8 nucleotides HGI48_RS03615 and HGI48_RS03620 are separated by 42 nucleotides HGI48_RS03620 and HGI48_RS03625 are separated by 340 nucleotides
HGI48_RS03610: HGI48_RS03610 - ABC transporter permease, at 764,890 to 765,795
_RS03610
HGI48_RS03615: HGI48_RS03615 - ABC transporter ATP-binding protein, at 765,788 to 766,663
_RS03615
HGI48_RS03620: HGI48_RS03620 - ABC transporter ATP-binding protein, at 766,706 to 767,479
_RS03620
HGI48_RS03625: HGI48_RS03625 - AI-2E family transporter, at 767,820 to 768,830
_RS03625
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 765.764 kb on + strand at 765.764 kb on + strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.817 kb on + strand at 765.817 kb on + strand at 766.124 kb on + strand at 766.124 kb on + strand, within HGI48_RS03615 at 766.124 kb on + strand, within HGI48_RS03615 at 766.125 kb on - strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.333 kb on - strand, within HGI48_RS03615 at 766.453 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand at 766.509 kb on - strand, within HGI48_RS03615 at 766.509 kb on - strand, within HGI48_RS03615 at 766.654 kb on + strand at 766.672 kb on + strand at 766.672 kb on + strand at 766.673 kb on - strand at 766.687 kb on - strand at 766.721 kb on - strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.871 kb on - strand, within HGI48_RS03620 at 766.871 kb on - strand at 766.890 kb on + strand, within HGI48_RS03620 at 766.890 kb on + strand, within HGI48_RS03620 at 766.891 kb on - strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.068 kb on - strand, within HGI48_RS03620 at 767.256 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand at 767.326 kb on + strand, within HGI48_RS03620 at 767.353 kb on + strand, within HGI48_RS03620 at 767.382 kb on + strand, within HGI48_RS03620 at 767.409 kb on - strand at 767.409 kb on - strand at 767.410 kb on + strand at 767.410 kb on + strand at 767.411 kb on - strand at 767.411 kb on - strand at 767.442 kb on - strand at 767.477 kb on + strand at 767.478 kb on - strand at 767.478 kb on - strand at 767.506 kb on + strand at 767.506 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.646 kb on + strand at 767.647 kb on - strand at 767.647 kb on - strand at 767.666 kb on + strand at 767.667 kb on - strand at 767.690 kb on - strand at 767.698 kb on - strand at 767.715 kb on + strand at 767.716 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.802 kb on + strand at 767.802 kb on + strand at 767.819 kb on + strand at 767.819 kb on + strand at 767.819 kb on + strand at 767.820 kb on - strand at 767.820 kb on - strand at 767.820 kb on - strand at 767.868 kb on - strand at 767.868 kb on - strand at 767.918 kb on + strand at 767.937 kb on + strand, within HGI48_RS03625 at 767.937 kb on + strand, within HGI48_RS03625 at 767.938 kb on - strand, within HGI48_RS03625 at 767.949 kb on - strand, within HGI48_RS03625 at 767.953 kb on + strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.159 kb on + strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.171 kb on + strand, within HGI48_RS03625 at 768.188 kb on - strand, within HGI48_RS03625 at 768.293 kb on + strand, within HGI48_RS03625 at 768.294 kb on - strand, within HGI48_RS03625 at 768.294 kb on - strand, within HGI48_RS03625 at 768.321 kb on + strand, within HGI48_RS03625 at 768.321 kb on + strand at 768.321 kb on + strand, within HGI48_RS03625 at 768.322 kb on - strand at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.323 kb on + strand, within HGI48_RS03625 at 768.323 kb on + strand, within HGI48_RS03625 at 768.324 kb on - strand, within HGI48_RS03625 at 768.324 kb on - strand at 768.324 kb on - strand, within HGI48_RS03625 at 768.340 kb on + strand, within HGI48_RS03625 at 768.439 kb on + strand at 768.464 kb on + strand, within HGI48_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 765,764 + +0.1 765,764 + -0.8 765,765 - -1.8 765,765 - -1.1 765,765 - -1.6 765,765 - -0.3 765,793 + +0.5 765,793 + +0.8 765,793 + -0.9 765,794 - +3.4 765,794 - -1.0 765,794 - +1.0 765,801 + +0.0 765,801 + +0.1 765,801 + +0.2 765,801 + -1.5 765,801 + -0.2 765,801 + -0.0 765,801 + +1.4 765,801 + -0.9 765,802 - -0.8 765,802 - +1.0 765,802 - +0.4 765,802 - -2.0 765,802 - -0.3 765,802 - -0.5 765,802 - +0.8 765,817 + -0.1 765,817 + -0.2 766,124 + +1.4 766,124 + HGI48_RS03615 0.38 -1.2 766,124 + HGI48_RS03615 0.38 -0.2 766,125 - HGI48_RS03615 0.38 -1.8 766,172 + HGI48_RS03615 0.44 +0.6 766,172 + HGI48_RS03615 0.44 -1.2 766,312 + HGI48_RS03615 0.60 -0.5 766,312 + HGI48_RS03615 0.60 -0.4 766,312 + HGI48_RS03615 0.60 -2.0 766,312 + HGI48_RS03615 0.60 -1.5 766,313 - HGI48_RS03615 0.60 +0.5 766,313 - HGI48_RS03615 0.60 +2.4 766,333 - HGI48_RS03615 0.62 +0.3 766,453 + HGI48_RS03615 0.76 +0.4 766,508 + HGI48_RS03615 0.82 -0.1 766,508 + +0.2 766,509 - HGI48_RS03615 0.82 +1.1 766,509 - HGI48_RS03615 0.82 -2.4 766,654 + -0.8 766,672 + +0.4 766,672 + -0.2 766,673 - +0.6 766,687 - +0.8 766,721 - -3.7 766,769 + +0.1 766,769 + +0.3 766,769 + -2.9 766,769 + -1.7 766,769 + +4.4 766,769 + -0.4 766,770 - -0.5 766,770 - +1.3 766,770 - -0.8 766,770 - +0.6 766,770 - +0.1 766,770 - -0.7 766,770 - -1.8 766,770 - -1.2 766,871 - HGI48_RS03620 0.21 +0.8 766,871 - -0.8 766,890 + HGI48_RS03620 0.24 -1.4 766,890 + HGI48_RS03620 0.24 +0.5 766,891 - HGI48_RS03620 0.24 -0.2 767,025 + HGI48_RS03620 0.41 +1.0 767,025 + HGI48_RS03620 0.41 -1.2 767,026 - HGI48_RS03620 0.41 -0.9 767,026 - HGI48_RS03620 0.41 -1.8 767,068 - HGI48_RS03620 0.47 +1.0 767,256 + HGI48_RS03620 0.71 -2.2 767,274 + HGI48_RS03620 0.73 -1.8 767,274 + HGI48_RS03620 0.73 -0.5 767,275 - HGI48_RS03620 0.74 +0.2 767,275 - HGI48_RS03620 0.74 -0.5 767,279 + HGI48_RS03620 0.74 +1.0 767,279 + HGI48_RS03620 0.74 -2.0 767,279 + HGI48_RS03620 0.74 +0.1 767,279 + HGI48_RS03620 0.74 +0.0 767,280 - HGI48_RS03620 0.74 +0.1 767,280 - HGI48_RS03620 0.74 -0.5 767,280 - HGI48_RS03620 0.74 +0.4 767,280 - +0.8 767,326 + HGI48_RS03620 0.80 +0.3 767,353 + HGI48_RS03620 0.84 -0.8 767,382 + HGI48_RS03620 0.87 -0.5 767,409 - -0.3 767,409 - +0.4 767,410 + +0.4 767,410 + -1.8 767,411 - +0.1 767,411 - -2.7 767,442 - -0.4 767,477 + -1.2 767,478 - +1.4 767,478 - +0.5 767,506 + -0.1 767,506 + +0.2 767,635 + +0.1 767,635 + -1.2 767,635 + -0.7 767,635 + -0.6 767,635 + +0.3 767,635 + +1.6 767,636 - +0.1 767,636 - +0.8 767,636 - -1.2 767,636 - -1.8 767,636 - +0.1 767,636 - -0.4 767,636 - -1.2 767,636 - +0.1 767,640 - -1.5 767,640 - -0.0 767,646 + -1.5 767,647 - +0.5 767,647 - +0.6 767,666 + +0.2 767,667 - +0.8 767,690 - -1.8 767,698 - -0.8 767,715 + +1.2 767,716 - -1.0 767,797 - -0.2 767,797 - -0.3 767,797 - +1.8 767,797 - -0.8 767,797 - -1.5 767,802 + +0.8 767,802 + -0.5 767,819 + -0.2 767,819 + +0.1 767,819 + -0.8 767,820 - -0.2 767,820 - -0.2 767,820 - +1.5 767,868 - -1.8 767,868 - -1.3 767,918 + -0.1 767,937 + HGI48_RS03625 0.12 +1.0 767,937 + HGI48_RS03625 0.12 +1.2 767,938 - HGI48_RS03625 0.12 -0.5 767,949 - HGI48_RS03625 0.13 -0.8 767,953 + HGI48_RS03625 0.13 +1.0 768,153 - HGI48_RS03625 0.33 -0.6 768,153 - HGI48_RS03625 0.33 -0.0 768,153 - HGI48_RS03625 0.33 -0.6 768,159 + HGI48_RS03625 0.34 +1.7 768,160 - HGI48_RS03625 0.34 -0.7 768,160 - HGI48_RS03625 0.34 -1.2 768,160 - HGI48_RS03625 0.34 +0.7 768,171 + HGI48_RS03625 0.35 -0.2 768,188 - HGI48_RS03625 0.36 -2.2 768,293 + HGI48_RS03625 0.47 -1.5 768,294 - HGI48_RS03625 0.47 -0.7 768,294 - HGI48_RS03625 0.47 +0.3 768,321 + HGI48_RS03625 0.50 -0.4 768,321 + +1.8 768,321 + HGI48_RS03625 0.50 +2.2 768,322 - -0.8 768,322 - HGI48_RS03625 0.50 -1.2 768,322 - HGI48_RS03625 0.50 +0.4 768,322 - HGI48_RS03625 0.50 -1.3 768,322 - HGI48_RS03625 0.50 +0.9 768,322 - HGI48_RS03625 0.50 +1.4 768,322 - HGI48_RS03625 0.50 -1.0 768,323 + HGI48_RS03625 0.50 +0.8 768,323 + HGI48_RS03625 0.50 -1.5 768,324 - HGI48_RS03625 0.50 -0.2 768,324 - +0.2 768,324 - HGI48_RS03625 0.50 +0.8 768,340 + HGI48_RS03625 0.51 -0.6 768,439 + +1.2 768,464 + HGI48_RS03625 0.64 +0.2
Or see this region's nucleotide sequence