Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03350 and HGI48_RS03355 are separated by 116 nucleotides HGI48_RS03355 and HGI48_RS03360 are separated by 32 nucleotides HGI48_RS03360 and HGI48_RS03365 are separated by 76 nucleotides HGI48_RS03365 and HGI48_RS03370 are separated by 111 nucleotides HGI48_RS03370 and HGI48_RS03375 are separated by 126 nucleotides
HGI48_RS03350: HGI48_RS03350 - LysR family transcriptional regulator, at 705,734 to 706,636
_RS03350
HGI48_RS03355: HGI48_RS03355 - tRNA-Leu, at 706,753 to 706,838
_RS03355
HGI48_RS03360: HGI48_RS03360 - tRNA-Leu, at 706,871 to 706,956
_RS03360
HGI48_RS03365: HGI48_RS03365 - tRNA-Leu, at 707,033 to 707,118
_RS03365
HGI48_RS03370: HGI48_RS03370 - DUF1435 domain-containing protein, at 707,230 to 707,514
_RS03370
HGI48_RS03375: HGI48_RS03375 - LysR family transcriptional regulator, at 707,641 to 708,534
_RS03375
Position (kb) 706
707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.929 kb on + strand, within HGI48_RS03350 at 706.226 kb on - strand, within HGI48_RS03350 at 706.226 kb on - strand, within HGI48_RS03350 at 706.307 kb on + strand, within HGI48_RS03350 at 706.308 kb on - strand, within HGI48_RS03350 at 706.321 kb on + strand, within HGI48_RS03350 at 706.321 kb on + strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.366 kb on + strand, within HGI48_RS03350 at 706.367 kb on - strand, within HGI48_RS03350 at 706.415 kb on + strand at 706.415 kb on + strand at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.676 kb on + strand at 706.677 kb on - strand at 706.677 kb on - strand at 706.728 kb on + strand at 706.728 kb on + strand at 706.728 kb on + strand at 706.729 kb on - strand at 706.737 kb on + strand at 706.737 kb on + strand at 706.737 kb on + strand at 706.738 kb on - strand at 706.738 kb on - strand at 706.794 kb on + strand, within HGI48_RS03355 at 706.794 kb on + strand at 706.891 kb on - strand, within HGI48_RS03360 at 707.013 kb on + strand at 707.135 kb on + strand at 707.136 kb on - strand at 707.169 kb on + strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.231 kb on + strand at 707.243 kb on - strand at 707.366 kb on + strand, within HGI48_RS03370 at 707.367 kb on - strand, within HGI48_RS03370 at 707.386 kb on + strand, within HGI48_RS03370 at 707.386 kb on + strand at 707.431 kb on + strand, within HGI48_RS03370 at 707.431 kb on + strand, within HGI48_RS03370 at 707.431 kb on + strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.433 kb on + strand, within HGI48_RS03370 at 707.433 kb on + strand, within HGI48_RS03370 at 707.434 kb on - strand, within HGI48_RS03370 at 707.434 kb on - strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.474 kb on - strand, within HGI48_RS03370 at 707.539 kb on + strand at 707.551 kb on + strand at 707.569 kb on - strand at 707.569 kb on - strand at 707.569 kb on - strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.595 kb on + strand at 707.627 kb on - strand at 707.657 kb on + strand at 707.657 kb on + strand at 707.658 kb on - strand at 707.658 kb on - strand at 707.733 kb on + strand, within HGI48_RS03375 at 707.734 kb on - strand, within HGI48_RS03375 at 707.762 kb on + strand, within HGI48_RS03375 at 707.762 kb on + strand, within HGI48_RS03375 at 707.762 kb on + strand at 707.763 kb on - strand, within HGI48_RS03375 at 707.763 kb on - strand, within HGI48_RS03375 at 707.763 kb on - strand, within HGI48_RS03375 at 707.897 kb on + strand, within HGI48_RS03375 at 707.898 kb on - strand, within HGI48_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 705,926 + HGI48_RS03350 0.21 +0.2 705,926 + HGI48_RS03350 0.21 -0.6 705,926 + HGI48_RS03350 0.21 -0.1 705,926 + HGI48_RS03350 0.21 -0.5 705,926 + HGI48_RS03350 0.21 +1.0 705,926 + HGI48_RS03350 0.21 -1.3 705,926 + HGI48_RS03350 0.21 +0.4 705,927 - HGI48_RS03350 0.21 -1.8 705,927 - HGI48_RS03350 0.21 +0.3 705,927 - HGI48_RS03350 0.21 -0.8 705,927 - HGI48_RS03350 0.21 +2.0 705,929 + HGI48_RS03350 0.22 +0.2 706,226 - HGI48_RS03350 0.54 -1.2 706,226 - HGI48_RS03350 0.54 -1.8 706,307 + HGI48_RS03350 0.63 +0.2 706,308 - HGI48_RS03350 0.64 -1.0 706,321 + HGI48_RS03350 0.65 -0.3 706,321 + HGI48_RS03350 0.65 -0.2 706,322 - HGI48_RS03350 0.65 -0.7 706,322 - HGI48_RS03350 0.65 +0.3 706,322 - HGI48_RS03350 0.65 +0.2 706,322 - HGI48_RS03350 0.65 -0.3 706,322 - HGI48_RS03350 0.65 -1.0 706,322 - HGI48_RS03350 0.65 +0.0 706,322 - HGI48_RS03350 0.65 -0.8 706,322 - HGI48_RS03350 0.65 -1.1 706,366 + HGI48_RS03350 0.70 +0.4 706,367 - HGI48_RS03350 0.70 -0.2 706,415 + +1.8 706,415 + +0.2 706,415 + HGI48_RS03350 0.75 -2.2 706,415 + +2.1 706,415 + HGI48_RS03350 0.75 -1.2 706,415 + HGI48_RS03350 0.75 -0.2 706,415 + HGI48_RS03350 0.75 -1.0 706,415 + HGI48_RS03350 0.75 -0.4 706,415 + HGI48_RS03350 0.75 -1.5 706,415 + HGI48_RS03350 0.75 -0.2 706,416 - HGI48_RS03350 0.76 -1.3 706,416 - HGI48_RS03350 0.76 -0.2 706,416 - HGI48_RS03350 0.76 -0.4 706,416 - HGI48_RS03350 0.76 -1.7 706,416 - HGI48_RS03350 0.76 -0.0 706,416 - HGI48_RS03350 0.76 -0.8 706,416 - HGI48_RS03350 0.76 -1.8 706,541 + HGI48_RS03350 0.89 +1.1 706,541 + HGI48_RS03350 0.89 -1.5 706,541 + HGI48_RS03350 0.89 -0.5 706,542 - HGI48_RS03350 0.89 +1.3 706,542 - HGI48_RS03350 0.89 -2.2 706,542 - HGI48_RS03350 0.89 +0.2 706,550 + -4.1 706,550 + -1.8 706,550 + +0.3 706,550 + -1.2 706,550 + -0.3 706,550 + +0.1 706,550 + +0.5 706,551 - -0.3 706,551 - -0.2 706,551 - +0.3 706,551 - +0.0 706,551 - -0.2 706,551 - -0.2 706,551 - -0.2 706,676 + -0.5 706,677 - +0.3 706,677 - -0.8 706,728 + +1.8 706,728 + -0.5 706,728 + +1.2 706,729 - +1.4 706,737 + +3.6 706,737 + +1.1 706,737 + -0.2 706,738 - -0.8 706,738 - -1.5 706,794 + HGI48_RS03355 0.48 -1.2 706,794 + +5.0 706,891 - HGI48_RS03360 0.23 -0.6 707,013 + -1.8 707,135 + -1.3 707,136 - +2.6 707,169 + +2.4 707,170 - -1.8 707,170 - +0.7 707,170 - +0.6 707,170 - +1.3 707,231 + -0.3 707,243 - +0.2 707,366 + HGI48_RS03370 0.48 +0.3 707,367 - HGI48_RS03370 0.48 -1.5 707,386 + HGI48_RS03370 0.55 +0.5 707,386 + -0.2 707,431 + HGI48_RS03370 0.71 +0.1 707,431 + HGI48_RS03370 0.71 +1.0 707,431 + HGI48_RS03370 0.71 +0.2 707,432 - HGI48_RS03370 0.71 -0.5 707,432 - HGI48_RS03370 0.71 -2.5 707,432 - HGI48_RS03370 0.71 -2.9 707,432 - HGI48_RS03370 0.71 -0.1 707,432 - HGI48_RS03370 0.71 -1.5 707,432 - HGI48_RS03370 0.71 -0.4 707,433 + HGI48_RS03370 0.71 +0.2 707,433 + HGI48_RS03370 0.71 +0.8 707,434 - HGI48_RS03370 0.72 -0.2 707,434 - HGI48_RS03370 0.72 -0.5 707,473 + HGI48_RS03370 0.85 -0.5 707,473 + HGI48_RS03370 0.85 +1.1 707,473 + HGI48_RS03370 0.85 +1.2 707,473 + HGI48_RS03370 0.85 -0.2 707,474 - HGI48_RS03370 0.86 -0.4 707,539 + -0.2 707,551 + -1.0 707,569 - +0.1 707,569 - +0.3 707,569 - -1.2 707,570 + -1.8 707,570 + -0.2 707,570 + +0.4 707,570 + -4.1 707,570 + +0.7 707,570 + +0.8 707,571 - +1.4 707,571 - +0.5 707,571 - +0.4 707,571 - -0.2 707,571 - -0.1 707,571 - -3.2 707,571 - +0.6 707,571 - -2.0 707,571 - -0.8 707,571 - -1.2 707,595 + -0.9 707,627 - +0.7 707,657 + -0.6 707,657 + +0.4 707,658 - -0.2 707,658 - -0.5 707,733 + HGI48_RS03375 0.10 +1.2 707,734 - HGI48_RS03375 0.10 -1.0 707,762 + HGI48_RS03375 0.14 -1.5 707,762 + HGI48_RS03375 0.14 +0.3 707,762 + +0.8 707,763 - HGI48_RS03375 0.14 -0.2 707,763 - HGI48_RS03375 0.14 +0.2 707,763 - HGI48_RS03375 0.14 -1.2 707,897 + HGI48_RS03375 0.29 -0.0 707,898 - HGI48_RS03375 0.29 +0.3
Or see this region's nucleotide sequence