Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03275 and HGI48_RS03280 are separated by 65 nucleotides HGI48_RS03280 and HGI48_RS03285 are separated by 117 nucleotides
HGI48_RS03275: HGI48_RS03275 - DEAD/DEAH family ATP-dependent RNA helicase, at 691,278 to 693,164
_RS03275
HGI48_RS03280: HGI48_RS03280 - luciferase-like monooxygenase, at 693,230 to 694,249
_RS03280
HGI48_RS03285: HGI48_RS03285 - U32 family peptidase, at 694,367 to 695,245
_RS03285
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.262 kb on + strand, within HGI48_RS03275 at 692.263 kb on - strand, within HGI48_RS03275 at 692.266 kb on + strand, within HGI48_RS03275 at 692.832 kb on + strand, within HGI48_RS03275 at 692.833 kb on - strand, within HGI48_RS03275 at 692.833 kb on - strand, within HGI48_RS03275 at 693.152 kb on + strand at 693.153 kb on - strand at 693.155 kb on + strand at 693.155 kb on + strand at 693.155 kb on + strand at 693.156 kb on - strand at 693.156 kb on - strand at 693.166 kb on - strand at 693.212 kb on + strand at 693.213 kb on - strand at 693.213 kb on - strand at 693.226 kb on + strand at 693.227 kb on - strand at 693.227 kb on - strand at 693.231 kb on + strand at 693.314 kb on + strand at 693.314 kb on + strand at 693.314 kb on + strand at 693.315 kb on - strand at 693.425 kb on + strand at 693.426 kb on - strand, within HGI48_RS03280 at 693.453 kb on + strand, within HGI48_RS03280 at 693.453 kb on + strand at 693.453 kb on + strand, within HGI48_RS03280 at 693.453 kb on + strand, within HGI48_RS03280 at 693.453 kb on + strand, within HGI48_RS03280 at 693.454 kb on - strand, within HGI48_RS03280 at 693.454 kb on - strand at 693.515 kb on - strand, within HGI48_RS03280 at 693.595 kb on + strand at 693.595 kb on + strand, within HGI48_RS03280 at 693.595 kb on + strand, within HGI48_RS03280 at 693.595 kb on + strand, within HGI48_RS03280 at 693.595 kb on + strand, within HGI48_RS03280 at 693.595 kb on + strand, within HGI48_RS03280 at 693.595 kb on + strand, within HGI48_RS03280 at 693.596 kb on - strand, within HGI48_RS03280 at 693.596 kb on - strand, within HGI48_RS03280 at 693.596 kb on - strand, within HGI48_RS03280 at 693.597 kb on + strand, within HGI48_RS03280 at 693.597 kb on + strand, within HGI48_RS03280 at 693.598 kb on - strand, within HGI48_RS03280 at 693.639 kb on + strand, within HGI48_RS03280 at 693.647 kb on + strand, within HGI48_RS03280 at 693.647 kb on + strand, within HGI48_RS03280 at 693.648 kb on - strand, within HGI48_RS03280 at 693.729 kb on + strand, within HGI48_RS03280 at 693.820 kb on - strand, within HGI48_RS03280 at 693.820 kb on - strand, within HGI48_RS03280 at 693.820 kb on - strand at 693.820 kb on - strand, within HGI48_RS03280 at 693.948 kb on + strand, within HGI48_RS03280 at 693.959 kb on + strand, within HGI48_RS03280 at 693.959 kb on + strand, within HGI48_RS03280 at 693.959 kb on + strand, within HGI48_RS03280 at 693.960 kb on - strand, within HGI48_RS03280 at 694.034 kb on - strand, within HGI48_RS03280 at 694.056 kb on + strand, within HGI48_RS03280 at 694.057 kb on - strand, within HGI48_RS03280 at 694.099 kb on + strand at 694.099 kb on + strand, within HGI48_RS03280 at 694.100 kb on - strand, within HGI48_RS03280 at 694.100 kb on - strand, within HGI48_RS03280 at 694.100 kb on - strand, within HGI48_RS03280 at 694.100 kb on - strand, within HGI48_RS03280 at 694.208 kb on - strand at 694.249 kb on + strand at 694.249 kb on + strand at 694.294 kb on + strand at 694.295 kb on - strand at 694.312 kb on + strand at 694.312 kb on + strand at 694.318 kb on - strand at 694.318 kb on - strand at 694.318 kb on - strand at 694.318 kb on - strand at 694.322 kb on + strand at 694.328 kb on + strand at 694.328 kb on + strand at 694.329 kb on - strand at 694.562 kb on - strand, within HGI48_RS03285 at 694.562 kb on - strand, within HGI48_RS03285 at 694.562 kb on - strand, within HGI48_RS03285 at 694.563 kb on + strand, within HGI48_RS03285 at 694.563 kb on + strand, within HGI48_RS03285 at 694.564 kb on - strand, within HGI48_RS03285 at 694.564 kb on - strand, within HGI48_RS03285 at 694.564 kb on - strand, within HGI48_RS03285 at 694.647 kb on + strand, within HGI48_RS03285 at 694.648 kb on - strand, within HGI48_RS03285 at 694.719 kb on + strand, within HGI48_RS03285 at 694.720 kb on - strand, within HGI48_RS03285 at 694.720 kb on - strand, within HGI48_RS03285 at 694.740 kb on + strand, within HGI48_RS03285 at 694.740 kb on + strand, within HGI48_RS03285 at 694.740 kb on + strand at 694.740 kb on + strand, within HGI48_RS03285 at 694.740 kb on + strand, within HGI48_RS03285 at 694.740 kb on + strand, within HGI48_RS03285 at 694.740 kb on + strand, within HGI48_RS03285 at 694.741 kb on - strand, within HGI48_RS03285 at 694.741 kb on - strand, within HGI48_RS03285 at 694.741 kb on - strand, within HGI48_RS03285 at 694.741 kb on - strand, within HGI48_RS03285 at 694.837 kb on + strand, within HGI48_RS03285 at 694.837 kb on + strand, within HGI48_RS03285 at 694.837 kb on + strand, within HGI48_RS03285 at 694.838 kb on - strand, within HGI48_RS03285 at 694.838 kb on - strand, within HGI48_RS03285 at 694.879 kb on + strand, within HGI48_RS03285 at 694.880 kb on - strand, within HGI48_RS03285 at 694.881 kb on + strand, within HGI48_RS03285 at 694.881 kb on + strand, within HGI48_RS03285 at 694.881 kb on + strand, within HGI48_RS03285 at 694.882 kb on - strand, within HGI48_RS03285 at 694.882 kb on - strand, within HGI48_RS03285 at 694.882 kb on - strand, within HGI48_RS03285 at 694.882 kb on - strand, within HGI48_RS03285 at 694.890 kb on + strand, within HGI48_RS03285 at 694.890 kb on + strand, within HGI48_RS03285 at 694.890 kb on + strand, within HGI48_RS03285 at 694.890 kb on + strand at 694.890 kb on + strand, within HGI48_RS03285 at 694.890 kb on + strand, within HGI48_RS03285 at 694.890 kb on + strand at 694.996 kb on - strand, within HGI48_RS03285 at 695.148 kb on + strand, within HGI48_RS03285 at 695.148 kb on + strand, within HGI48_RS03285 at 695.148 kb on + strand, within HGI48_RS03285 at 695.148 kb on + strand, within HGI48_RS03285 at 695.149 kb on - strand, within HGI48_RS03285 at 695.149 kb on - strand, within HGI48_RS03285 at 695.149 kb on - strand at 695.149 kb on - strand, within HGI48_RS03285 at 695.149 kb on - strand, within HGI48_RS03285 at 695.152 kb on + strand, within HGI48_RS03285 at 695.152 kb on + strand, within HGI48_RS03285 at 695.152 kb on + strand, within HGI48_RS03285 at 695.153 kb on - strand, within HGI48_RS03285 at 695.153 kb on - strand, within HGI48_RS03285 at 695.155 kb on + strand, within HGI48_RS03285 at 695.214 kb on + strand at 695.215 kb on - strand at 695.215 kb on - strand at 695.218 kb on - strand at 695.238 kb on + strand at 695.238 kb on + strand at 695.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 692,262 + HGI48_RS03275 0.52 -1.0 692,263 - HGI48_RS03275 0.52 -1.2 692,266 + HGI48_RS03275 0.52 -0.2 692,832 + HGI48_RS03275 0.82 +0.7 692,833 - HGI48_RS03275 0.82 +1.6 692,833 - HGI48_RS03275 0.82 -0.9 693,152 + -0.2 693,153 - -0.2 693,155 + +1.5 693,155 + -0.5 693,155 + +1.1 693,156 - -0.8 693,156 - +0.8 693,166 - -0.3 693,212 + -2.5 693,213 - +1.4 693,213 - +0.8 693,226 + +2.4 693,227 - +0.8 693,227 - +0.4 693,231 + +0.1 693,314 + +0.2 693,314 + +0.8 693,314 + +0.1 693,315 - +1.1 693,425 + +0.8 693,426 - HGI48_RS03280 0.19 -0.5 693,453 + HGI48_RS03280 0.22 -1.2 693,453 + -0.8 693,453 + HGI48_RS03280 0.22 -1.5 693,453 + HGI48_RS03280 0.22 -0.2 693,453 + HGI48_RS03280 0.22 +1.4 693,454 - HGI48_RS03280 0.22 +0.2 693,454 - +1.2 693,515 - HGI48_RS03280 0.28 -0.9 693,595 + +0.2 693,595 + HGI48_RS03280 0.36 -1.5 693,595 + HGI48_RS03280 0.36 -0.7 693,595 + HGI48_RS03280 0.36 +1.6 693,595 + HGI48_RS03280 0.36 +0.1 693,595 + HGI48_RS03280 0.36 -0.2 693,595 + HGI48_RS03280 0.36 -0.0 693,596 - HGI48_RS03280 0.36 -2.0 693,596 - HGI48_RS03280 0.36 -1.3 693,596 - HGI48_RS03280 0.36 -2.2 693,597 + HGI48_RS03280 0.36 +1.0 693,597 + HGI48_RS03280 0.36 +1.0 693,598 - HGI48_RS03280 0.36 -0.0 693,639 + HGI48_RS03280 0.40 -0.1 693,647 + HGI48_RS03280 0.41 +0.2 693,647 + HGI48_RS03280 0.41 -2.3 693,648 - HGI48_RS03280 0.41 -0.3 693,729 + HGI48_RS03280 0.49 -0.2 693,820 - HGI48_RS03280 0.58 +0.1 693,820 - HGI48_RS03280 0.58 +0.6 693,820 - +0.2 693,820 - HGI48_RS03280 0.58 -1.0 693,948 + HGI48_RS03280 0.70 +1.1 693,959 + HGI48_RS03280 0.71 -0.7 693,959 + HGI48_RS03280 0.71 -0.5 693,959 + HGI48_RS03280 0.71 -0.5 693,960 - HGI48_RS03280 0.72 -0.2 694,034 - HGI48_RS03280 0.79 +0.4 694,056 + HGI48_RS03280 0.81 -0.6 694,057 - HGI48_RS03280 0.81 +1.0 694,099 + +0.2 694,099 + HGI48_RS03280 0.85 +0.4 694,100 - HGI48_RS03280 0.85 -1.5 694,100 - HGI48_RS03280 0.85 -0.2 694,100 - HGI48_RS03280 0.85 -0.0 694,100 - HGI48_RS03280 0.85 -0.6 694,208 - +0.0 694,249 + +0.0 694,249 + -2.0 694,294 + -0.2 694,295 - -0.2 694,312 + -0.5 694,312 + +0.6 694,318 - -0.8 694,318 - -0.8 694,318 - -1.3 694,318 - +1.0 694,322 + -0.5 694,328 + -0.8 694,328 + +0.8 694,329 - -0.1 694,562 - HGI48_RS03285 0.22 -1.5 694,562 - HGI48_RS03285 0.22 -0.8 694,562 - HGI48_RS03285 0.22 +0.6 694,563 + HGI48_RS03285 0.22 +0.8 694,563 + HGI48_RS03285 0.22 -2.0 694,564 - HGI48_RS03285 0.22 +0.2 694,564 - HGI48_RS03285 0.22 -0.7 694,564 - HGI48_RS03285 0.22 +0.1 694,647 + HGI48_RS03285 0.32 -1.0 694,648 - HGI48_RS03285 0.32 -0.9 694,719 + HGI48_RS03285 0.40 -1.2 694,720 - HGI48_RS03285 0.40 -2.6 694,720 - HGI48_RS03285 0.40 -1.5 694,740 + HGI48_RS03285 0.42 -0.4 694,740 + HGI48_RS03285 0.42 -2.0 694,740 + +1.2 694,740 + HGI48_RS03285 0.42 -0.4 694,740 + HGI48_RS03285 0.42 -0.5 694,740 + HGI48_RS03285 0.42 -1.8 694,740 + HGI48_RS03285 0.42 +1.5 694,741 - HGI48_RS03285 0.43 -1.0 694,741 - HGI48_RS03285 0.43 -2.0 694,741 - HGI48_RS03285 0.43 +2.3 694,741 - HGI48_RS03285 0.43 -0.6 694,837 + HGI48_RS03285 0.53 -0.5 694,837 + HGI48_RS03285 0.53 +0.3 694,837 + HGI48_RS03285 0.53 -1.4 694,838 - HGI48_RS03285 0.54 -0.5 694,838 - HGI48_RS03285 0.54 +0.4 694,879 + HGI48_RS03285 0.58 -0.9 694,880 - HGI48_RS03285 0.58 -0.8 694,881 + HGI48_RS03285 0.58 -1.8 694,881 + HGI48_RS03285 0.58 -3.0 694,881 + HGI48_RS03285 0.58 -1.7 694,882 - HGI48_RS03285 0.59 -0.5 694,882 - HGI48_RS03285 0.59 -2.3 694,882 - HGI48_RS03285 0.59 +0.2 694,882 - HGI48_RS03285 0.59 -1.7 694,890 + HGI48_RS03285 0.59 -0.2 694,890 + HGI48_RS03285 0.59 +0.0 694,890 + HGI48_RS03285 0.59 +0.8 694,890 + +0.2 694,890 + HGI48_RS03285 0.59 -1.5 694,890 + HGI48_RS03285 0.59 +0.1 694,890 + +2.4 694,996 - HGI48_RS03285 0.72 -0.5 695,148 + HGI48_RS03285 0.89 -0.4 695,148 + HGI48_RS03285 0.89 +0.2 695,148 + HGI48_RS03285 0.89 -0.5 695,148 + HGI48_RS03285 0.89 -1.2 695,149 - HGI48_RS03285 0.89 -0.5 695,149 - HGI48_RS03285 0.89 -0.7 695,149 - +1.2 695,149 - HGI48_RS03285 0.89 +0.2 695,149 - HGI48_RS03285 0.89 +1.1 695,152 + HGI48_RS03285 0.89 -2.8 695,152 + HGI48_RS03285 0.89 -0.5 695,152 + HGI48_RS03285 0.89 +1.3 695,153 - HGI48_RS03285 0.89 -0.2 695,153 - HGI48_RS03285 0.89 -0.1 695,155 + HGI48_RS03285 0.90 +0.1 695,214 + +1.8 695,215 - -0.3 695,215 - -0.6 695,218 - -0.1 695,238 + +0.8 695,238 + -1.0 695,238 + +0.0
Or see this region's nucleotide sequence