Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03250 and HGI48_RS03255 are separated by 108 nucleotides HGI48_RS03255 and HGI48_RS03260 are separated by 250 nucleotides HGI48_RS03260 and HGI48_RS03265 are separated by 127 nucleotides
HGI48_RS03250: HGI48_RS03250 - tRNA pseudouridine(55) synthase TruB, at 686,380 to 687,336
_RS03250
HGI48_RS03255: HGI48_RS03255 - 30S ribosomal protein S15, at 687,445 to 687,714
_RS03255
HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085
_RS03260
HGI48_RS03265: HGI48_RS03265 - lipoprotein NlpI, at 690,213 to 691,097
_RS03265
Position (kb) 687
688
689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 686.974 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.975 kb on - strand, within HGI48_RS03250 at 687.001 kb on + strand, within HGI48_RS03250 at 687.141 kb on + strand, within HGI48_RS03250 at 687.142 kb on - strand, within HGI48_RS03250 at 687.176 kb on + strand, within HGI48_RS03250 at 687.713 kb on - strand at 687.713 kb on - strand at 687.713 kb on - strand at 687.785 kb on - strand at 687.789 kb on + strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.801 kb on - strand at 687.804 kb on + strand at 687.804 kb on + strand at 687.805 kb on - strand at 687.818 kb on - strand at 687.849 kb on - strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.892 kb on - strand at 687.892 kb on - strand at 687.910 kb on + strand at 687.911 kb on - strand at 687.911 kb on - strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.925 kb on - strand at 687.951 kb on + strand at 687.951 kb on + strand at 687.962 kb on - strand at 687.962 kb on - strand at 688.006 kb on + strand at 688.064 kb on - strand at 688.064 kb on - strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.084 kb on - strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.162 kb on + strand at 688.163 kb on - strand at 688.163 kb on - strand at 688.166 kb on + strand at 688.167 kb on - strand at 688.167 kb on - strand at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand, within HGI48_RS03260 at 688.354 kb on + strand at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand, within HGI48_RS03260 at 688.355 kb on - strand, within HGI48_RS03260 at 688.430 kb on + strand, within HGI48_RS03260 at 688.430 kb on + strand, within HGI48_RS03260 at 688.431 kb on - strand, within HGI48_RS03260 at 688.445 kb on + strand, within HGI48_RS03260 at 688.445 kb on + strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.446 kb on - strand, within HGI48_RS03260 at 688.679 kb on - strand, within HGI48_RS03260 at 688.764 kb on - strand, within HGI48_RS03260 at 688.890 kb on + strand, within HGI48_RS03260 at 688.891 kb on - strand, within HGI48_RS03260 at 688.891 kb on - strand at 689.057 kb on - strand, within HGI48_RS03260 at 689.080 kb on + strand, within HGI48_RS03260 at 689.102 kb on + strand, within HGI48_RS03260 at 689.103 kb on - strand, within HGI48_RS03260 at 689.103 kb on - strand, within HGI48_RS03260 at 689.117 kb on + strand, within HGI48_RS03260 at 689.137 kb on + strand, within HGI48_RS03260 at 689.185 kb on + strand, within HGI48_RS03260 at 689.232 kb on - strand, within HGI48_RS03260 at 689.281 kb on + strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.371 kb on - strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand at 689.388 kb on - strand, within HGI48_RS03260 at 689.590 kb on + strand, within HGI48_RS03260 at 689.591 kb on - strand, within HGI48_RS03260 at 689.743 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.838 kb on - strand, within HGI48_RS03260 at 689.838 kb on - strand at 689.838 kb on - strand, within HGI48_RS03260 at 689.845 kb on + strand, within HGI48_RS03260 at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.915 kb on - strand at 689.915 kb on - strand at 689.957 kb on + strand at 689.979 kb on + strand at 689.991 kb on + strand at 689.992 kb on - strand at 690.031 kb on - strand at 690.083 kb on + strand at 690.083 kb on + strand at 690.084 kb on - strand at 690.084 kb on - strand at 690.113 kb on - strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.135 kb on - strand at 690.135 kb on - strand at 690.238 kb on - strand at 690.254 kb on + strand at 690.255 kb on - strand at 690.381 kb on - strand, within HGI48_RS03265 at 690.403 kb on + strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.408 kb on + strand, within HGI48_RS03265 at 690.513 kb on + strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.581 kb on - strand, within HGI48_RS03265 at 690.598 kb on - strand, within HGI48_RS03265 at 690.604 kb on - strand, within HGI48_RS03265 at 690.634 kb on - strand, within HGI48_RS03265 at 690.866 kb on + strand, within HGI48_RS03265 at 690.881 kb on + strand, within HGI48_RS03265 at 690.928 kb on - strand at 690.932 kb on - strand, within HGI48_RS03265 at 690.932 kb on - strand, within HGI48_RS03265 at 690.936 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.946 kb on + strand at 690.946 kb on + strand at 690.946 kb on + strand, within HGI48_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 686,974 + HGI48_RS03250 0.62 +0.5 686,974 + HGI48_RS03250 0.62 -1.2 686,975 - HGI48_RS03250 0.62 +1.3 687,001 + HGI48_RS03250 0.65 +0.4 687,141 + HGI48_RS03250 0.80 -0.5 687,142 - HGI48_RS03250 0.80 -1.0 687,176 + HGI48_RS03250 0.83 +1.5 687,713 - -2.3 687,713 - -0.1 687,713 - -2.2 687,785 - -0.8 687,789 + -0.4 687,790 - -1.2 687,790 - +1.5 687,790 - -1.2 687,790 - -0.4 687,790 - +0.6 687,790 - -0.4 687,800 + -1.2 687,800 + +1.8 687,800 + +1.3 687,801 - -2.5 687,804 + +0.2 687,804 + +1.8 687,805 - -1.8 687,818 - -1.8 687,849 - -1.2 687,891 + -0.1 687,891 + +1.4 687,891 + -0.1 687,891 + -0.2 687,891 + -0.8 687,891 + -0.9 687,892 - -0.4 687,892 - +0.8 687,910 + -0.2 687,911 - -2.5 687,911 - +0.0 687,924 + -2.3 687,924 + -0.4 687,924 + +3.3 687,925 - -1.8 687,951 + -1.5 687,951 + +0.6 687,962 - +0.2 687,962 - -1.2 688,006 + +0.3 688,064 - -1.5 688,064 - -2.3 688,066 + -0.8 688,066 + -1.8 688,066 + +0.2 688,084 - -1.5 688,151 + -1.5 688,151 + -0.5 688,151 + -0.6 688,152 - +0.5 688,152 - -1.2 688,152 - +1.5 688,152 - -0.5 688,152 - +1.2 688,152 - -0.9 688,162 + +0.3 688,163 - -0.8 688,163 - -1.6 688,166 + -0.9 688,167 - -0.5 688,167 - -3.4 688,354 + HGI48_RS03260 0.18 -1.5 688,354 + HGI48_RS03260 0.18 -1.2 688,354 + HGI48_RS03260 0.18 -1.3 688,354 + HGI48_RS03260 0.18 -1.0 688,354 + -0.8 688,355 - HGI48_RS03260 0.18 -0.4 688,355 - +2.1 688,355 - HGI48_RS03260 0.18 -0.8 688,355 - HGI48_RS03260 0.18 +0.2 688,355 - HGI48_RS03260 0.18 -1.0 688,430 + HGI48_RS03260 0.22 -1.3 688,430 + HGI48_RS03260 0.22 -1.5 688,431 - HGI48_RS03260 0.22 -0.3 688,445 + HGI48_RS03260 0.23 +1.2 688,445 + HGI48_RS03260 0.23 -0.8 688,446 - HGI48_RS03260 0.23 -0.4 688,446 - HGI48_RS03260 0.23 -0.4 688,446 - HGI48_RS03260 0.23 +0.0 688,446 - HGI48_RS03260 0.23 +0.2 688,446 - +0.2 688,446 - HGI48_RS03260 0.23 -0.6 688,446 - HGI48_RS03260 0.23 -0.5 688,446 - HGI48_RS03260 0.23 -1.0 688,446 - HGI48_RS03260 0.23 +1.0 688,679 - HGI48_RS03260 0.34 -1.5 688,764 - HGI48_RS03260 0.38 -2.5 688,890 + HGI48_RS03260 0.44 -0.6 688,891 - HGI48_RS03260 0.44 -2.0 688,891 - -0.8 689,057 - HGI48_RS03260 0.51 +0.8 689,080 + HGI48_RS03260 0.53 +1.5 689,102 + HGI48_RS03260 0.54 +0.2 689,103 - HGI48_RS03260 0.54 -0.5 689,103 - HGI48_RS03260 0.54 -0.5 689,117 + HGI48_RS03260 0.54 -1.8 689,137 + HGI48_RS03260 0.55 +0.8 689,185 + HGI48_RS03260 0.58 -1.2 689,232 - HGI48_RS03260 0.60 -1.0 689,281 + HGI48_RS03260 0.62 -1.5 689,282 - HGI48_RS03260 0.62 -1.2 689,282 - HGI48_RS03260 0.62 -0.8 689,371 - HGI48_RS03260 0.66 -2.2 689,387 + HGI48_RS03260 0.67 -1.3 689,387 + HGI48_RS03260 0.67 -1.5 689,387 + HGI48_RS03260 0.67 -2.0 689,387 + HGI48_RS03260 0.67 +0.2 689,387 + HGI48_RS03260 0.67 +0.4 689,388 - HGI48_RS03260 0.67 -0.2 689,388 - HGI48_RS03260 0.67 -1.5 689,388 - +0.2 689,388 - HGI48_RS03260 0.67 -0.4 689,590 + HGI48_RS03260 0.77 -1.8 689,591 - HGI48_RS03260 0.77 +0.3 689,743 + HGI48_RS03260 0.84 +0.8 689,833 + HGI48_RS03260 0.88 -1.0 689,833 + HGI48_RS03260 0.88 -1.5 689,837 + HGI48_RS03260 0.88 -1.8 689,837 + HGI48_RS03260 0.88 -2.8 689,837 + HGI48_RS03260 0.88 -0.5 689,837 + HGI48_RS03260 0.88 -0.8 689,837 + HGI48_RS03260 0.88 +2.5 689,838 - HGI48_RS03260 0.88 -0.2 689,838 - +2.4 689,838 - HGI48_RS03260 0.88 -1.4 689,845 + HGI48_RS03260 0.89 -1.0 689,914 + +0.1 689,914 + -0.8 689,914 + +2.3 689,914 + -2.0 689,915 - -2.0 689,915 - +0.8 689,957 + -1.0 689,979 + +1.2 689,991 + -1.8 689,992 - -0.8 690,031 - -1.5 690,083 + -1.8 690,083 + -2.3 690,084 - +1.8 690,084 - +2.6 690,113 - -1.8 690,134 + +0.2 690,134 + +0.8 690,134 + +0.2 690,135 - -2.2 690,135 - -1.2 690,238 - +1.6 690,254 + +0.6 690,255 - -2.0 690,381 - HGI48_RS03265 0.19 -0.5 690,403 + HGI48_RS03265 0.21 -0.4 690,407 - HGI48_RS03265 0.22 -2.3 690,407 - HGI48_RS03265 0.22 -3.8 690,408 + HGI48_RS03265 0.22 -0.2 690,513 + HGI48_RS03265 0.34 -1.8 690,526 - HGI48_RS03265 0.35 -2.6 690,526 - HGI48_RS03265 0.35 -0.8 690,526 - HGI48_RS03265 0.35 -2.2 690,581 - HGI48_RS03265 0.42 -2.6 690,598 - HGI48_RS03265 0.44 -1.9 690,604 - HGI48_RS03265 0.44 -2.2 690,634 - HGI48_RS03265 0.48 -1.8 690,866 + HGI48_RS03265 0.74 -5.2 690,881 + HGI48_RS03265 0.75 -0.3 690,928 - +0.8 690,932 - HGI48_RS03265 0.81 +0.3 690,932 - HGI48_RS03265 0.81 -0.4 690,936 - HGI48_RS03265 0.82 -2.0 690,943 - HGI48_RS03265 0.82 +0.1 690,943 - HGI48_RS03265 0.82 -1.5 690,946 + -0.2 690,946 + -0.8 690,946 + HGI48_RS03265 0.83 -1.3
Or see this region's nucleotide sequence