Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02710 and HGI48_RS02715 are separated by 430 nucleotides HGI48_RS02715 and HGI48_RS02720 are separated by 21 nucleotides HGI48_RS02720 and HGI48_RS02725 are separated by 53 nucleotides
HGI48_RS02710: HGI48_RS02710 - chaperonin GroEL, at 585,028 to 586,674
_RS02710
HGI48_RS02715: HGI48_RS02715 - chorismate lyase, at 587,105 to 587,620
_RS02715
HGI48_RS02720: HGI48_RS02720 - 4-hydroxybenzoate octaprenyltransferase, at 587,642 to 588,505
_RS02720
HGI48_RS02725: HGI48_RS02725 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 588,559 to 591,042
_RS02725
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.772 kb on - strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.842 kb on - strand at 586.842 kb on - strand at 586.842 kb on - strand at 586.859 kb on + strand at 586.860 kb on - strand at 586.860 kb on - strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.914 kb on + strand at 586.914 kb on + strand at 586.915 kb on - strand at 586.964 kb on + strand at 586.965 kb on - strand at 586.973 kb on + strand at 586.973 kb on + strand at 586.974 kb on - strand at 587.035 kb on + strand at 587.035 kb on + strand at 587.058 kb on + strand at 587.058 kb on + strand at 587.058 kb on + strand at 587.059 kb on - strand at 587.074 kb on + strand at 587.078 kb on + strand at 587.079 kb on - strand at 587.102 kb on + strand at 587.203 kb on + strand, within HGI48_RS02715 at 587.203 kb on + strand at 587.321 kb on + strand, within HGI48_RS02715 at 587.367 kb on + strand at 587.367 kb on + strand, within HGI48_RS02715 at 587.377 kb on + strand, within HGI48_RS02715 at 587.594 kb on + strand at 587.594 kb on + strand at 588.503 kb on + strand at 588.504 kb on - strand at 588.527 kb on - strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 586,771 + -0.4 586,771 + -1.0 586,771 + +0.9 586,771 + +0.3 586,771 + +0.5 586,772 - -0.7 586,799 + -0.6 586,799 + +0.9 586,799 + +0.9 586,799 + -0.1 586,799 + -0.8 586,799 + -1.0 586,799 + -1.5 586,799 + -1.1 586,799 + +0.1 586,799 + -0.4 586,799 + -2.5 586,799 + -0.6 586,799 + -1.6 586,799 + -0.5 586,800 - +0.9 586,800 - -0.5 586,800 - +0.4 586,800 - +0.1 586,800 - +0.1 586,800 - -1.3 586,800 - -0.5 586,800 - -0.7 586,800 - +0.6 586,800 - +0.9 586,800 - -0.4 586,800 - +0.4 586,800 - -1.7 586,805 + -2.1 586,805 + -2.3 586,805 + -0.4 586,805 + +0.9 586,805 + -1.7 586,805 + -1.1 586,824 - +0.1 586,824 - -0.6 586,824 - +2.3 586,824 - -0.1 586,824 - +0.9 586,842 - -0.5 586,842 - +1.1 586,842 - -2.3 586,859 + -0.1 586,860 - +1.6 586,860 - -1.7 586,877 + -1.3 586,877 + -0.4 586,877 + -0.6 586,877 + -0.5 586,877 + -0.5 586,877 + -1.1 586,895 + +0.4 586,895 + +2.2 586,895 + -0.7 586,895 + -0.1 586,914 + -1.6 586,914 + +0.2 586,915 - -0.5 586,964 + -0.6 586,965 - -0.2 586,973 + -0.5 586,973 + +1.3 586,974 - +0.4 587,035 + +0.9 587,035 + +0.0 587,058 + -1.1 587,058 + -1.1 587,058 + +0.2 587,059 - -0.1 587,074 + +1.1 587,078 + +0.9 587,079 - +2.3 587,102 + +0.0 587,203 + HGI48_RS02715 0.19 +0.9 587,203 + +1.4 587,321 + HGI48_RS02715 0.42 -2.5 587,367 + -0.7 587,367 + HGI48_RS02715 0.51 +0.9 587,377 + HGI48_RS02715 0.53 +0.9 587,594 + -0.4 587,594 + +0.4 588,503 + -0.5 588,504 - -0.5 588,527 - -0.1 588,565 + +1.4 588,565 + +0.3 588,565 + -1.5 588,565 + +1.1 588,566 - +0.1 588,566 - +0.5 588,566 - -0.7 588,566 - -2.3
Or see this region's nucleotide sequence