Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02405 and HGI48_RS02410 are separated by 130 nucleotides HGI48_RS02410 and HGI48_RS02415 are separated by 39 nucleotides
HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540
_RS02405
HGI48_RS02410: HGI48_RS02410 - stress-response protein, at 522,671 to 522,859
_RS02410
HGI48_RS02415: HGI48_RS02415 - TatD family hydrolase, at 522,899 to 523,738
_RS02415
Position (kb) 522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.725 kb on + strand at 521.725 kb on + strand at 521.726 kb on - strand at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.784 kb on - strand at 521.802 kb on + strand at 521.814 kb on + strand at 521.814 kb on + strand at 521.815 kb on - strand at 521.815 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.897 kb on + strand at 521.897 kb on + strand at 521.922 kb on - strand at 521.932 kb on - strand at 521.932 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.957 kb on + strand at 521.958 kb on - strand at 521.968 kb on - strand, within HGI48_RS02405 at 522.031 kb on - strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.105 kb on + strand at 522.279 kb on + strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.297 kb on + strand at 522.298 kb on - strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.363 kb on + strand, within HGI48_RS02405 at 522.364 kb on - strand at 522.364 kb on - strand, within HGI48_RS02405 at 522.368 kb on + strand, within HGI48_RS02405 at 522.368 kb on + strand at 522.402 kb on + strand, within HGI48_RS02405 at 522.403 kb on - strand at 522.403 kb on - strand, within HGI48_RS02405 at 522.407 kb on + strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.505 kb on - strand at 522.505 kb on - strand at 522.577 kb on - strand at 522.594 kb on - strand at 522.594 kb on - strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.799 kb on - strand, within HGI48_RS02410 at 522.799 kb on - strand, within HGI48_RS02410 at 522.806 kb on + strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.831 kb on + strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.885 kb on + strand at 522.886 kb on - strand at 522.886 kb on - strand at 522.886 kb on - strand at 523.065 kb on - strand, within HGI48_RS02415 at 523.109 kb on + strand at 523.109 kb on + strand, within HGI48_RS02415 at 523.110 kb on - strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.139 kb on - strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.340 kb on - strand, within HGI48_RS02415 at 523.363 kb on - strand, within HGI48_RS02415 at 523.418 kb on + strand, within HGI48_RS02415 at 523.419 kb on - strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.452 kb on - strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.477 kb on + strand, within HGI48_RS02415 at 523.478 kb on - strand, within HGI48_RS02415 at 523.478 kb on - strand at 523.478 kb on - strand, within HGI48_RS02415 at 523.482 kb on - strand, within HGI48_RS02415 at 523.571 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand, within HGI48_RS02415 at 523.606 kb on + strand at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.607 kb on - strand, within HGI48_RS02415 at 523.609 kb on + strand at 523.609 kb on + strand, within HGI48_RS02415 at 523.609 kb on + strand, within HGI48_RS02415 at 523.610 kb on - strand, within HGI48_RS02415 at 523.752 kb on + strand at 523.766 kb on + strand at 523.767 kb on - strand at 523.767 kb on - strand at 523.767 kb on - strand at 523.769 kb on + strand at 523.769 kb on + strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.770 kb on - strand at 523.780 kb on - strand at 523.787 kb on + strand at 523.787 kb on + strand at 523.787 kb on + strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.796 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 521,721 + -0.7 521,721 + +0.0 521,721 + -1.1 521,721 + -0.1 521,722 - -0.1 521,722 - +1.6 521,722 - -1.2 521,722 - -1.1 521,725 + -2.0 521,725 + +0.9 521,726 - -0.1 521,753 + +1.9 521,754 - -1.7 521,754 - -0.7 521,783 + +0.4 521,783 + -1.1 521,783 + +0.1 521,783 + +0.4 521,784 - -0.4 521,802 + +1.5 521,814 + -1.7 521,814 + -0.7 521,815 - +0.5 521,815 - -0.5 521,834 - -0.3 521,834 - +0.0 521,882 + -0.7 521,897 + -0.4 521,897 + -0.1 521,922 - -1.3 521,932 - +1.2 521,932 - +3.2 521,936 - +0.3 521,936 - +0.3 521,936 - -1.1 521,936 - -1.1 521,957 + -0.3 521,958 - -1.1 521,968 - HGI48_RS02405 0.10 -0.4 522,031 - HGI48_RS02405 0.20 +0.4 522,085 + HGI48_RS02405 0.29 +0.2 522,085 + HGI48_RS02405 0.29 -1.0 522,085 + HGI48_RS02405 0.29 -1.1 522,085 + HGI48_RS02405 0.29 -0.3 522,085 + HGI48_RS02405 0.29 -0.7 522,086 - HGI48_RS02405 0.29 -0.1 522,086 - HGI48_RS02405 0.29 -1.5 522,086 - +0.3 522,086 - HGI48_RS02405 0.29 +0.7 522,086 - HGI48_RS02405 0.29 -1.7 522,086 - HGI48_RS02405 0.29 +0.1 522,105 + +0.3 522,279 + HGI48_RS02405 0.59 +1.2 522,280 - HGI48_RS02405 0.59 -0.6 522,280 - HGI48_RS02405 0.59 +1.0 522,297 + -0.7 522,298 - HGI48_RS02405 0.62 +0.7 522,325 + HGI48_RS02405 0.66 -0.5 522,325 + HGI48_RS02405 0.66 +0.1 522,325 + HGI48_RS02405 0.66 -0.6 522,325 + HGI48_RS02405 0.66 -1.5 522,325 + +0.9 522,325 + HGI48_RS02405 0.66 -0.2 522,325 + HGI48_RS02405 0.66 +0.9 522,325 + HGI48_RS02405 0.66 +0.0 522,326 - HGI48_RS02405 0.66 -0.1 522,326 - HGI48_RS02405 0.66 -0.1 522,326 - HGI48_RS02405 0.66 +0.3 522,326 - HGI48_RS02405 0.66 -0.4 522,326 - HGI48_RS02405 0.66 +0.9 522,326 - HGI48_RS02405 0.66 -0.1 522,326 - HGI48_RS02405 0.66 +0.9 522,363 + HGI48_RS02405 0.72 -0.1 522,364 - +2.4 522,364 - HGI48_RS02405 0.72 -1.5 522,368 + HGI48_RS02405 0.73 +1.9 522,368 + +3.2 522,402 + HGI48_RS02405 0.78 -0.1 522,403 - +1.3 522,403 - HGI48_RS02405 0.78 -1.4 522,407 + HGI48_RS02405 0.79 +1.9 522,408 - HGI48_RS02405 0.79 -0.9 522,408 - HGI48_RS02405 0.79 +0.1 522,505 - -2.0 522,505 - +0.9 522,577 - -1.1 522,594 - -1.1 522,594 - +0.4 522,604 + -0.4 522,604 + +0.2 522,604 + -1.1 522,604 + -1.5 522,604 + +0.3 522,605 - +1.4 522,605 - -0.7 522,605 - -1.8 522,605 - -1.5 522,605 - +1.0 522,799 - HGI48_RS02410 0.68 -0.1 522,799 - HGI48_RS02410 0.68 -2.6 522,806 + HGI48_RS02410 0.71 +1.3 522,807 - HGI48_RS02410 0.72 -0.1 522,807 - HGI48_RS02410 0.72 -1.7 522,831 + HGI48_RS02410 0.85 -0.1 522,832 - HGI48_RS02410 0.85 +0.1 522,832 - HGI48_RS02410 0.85 -0.7 522,885 + -0.9 522,886 - -0.5 522,886 - +1.0 522,886 - +1.3 523,065 - HGI48_RS02415 0.20 -0.3 523,109 + -0.7 523,109 + HGI48_RS02415 0.25 -1.0 523,110 - HGI48_RS02415 0.25 +0.2 523,136 + HGI48_RS02415 0.28 -0.1 523,136 + HGI48_RS02415 0.28 +0.4 523,136 + HGI48_RS02415 0.28 -0.6 523,136 + HGI48_RS02415 0.28 +1.1 523,136 + HGI48_RS02415 0.28 +0.4 523,137 - HGI48_RS02415 0.28 +0.0 523,137 - HGI48_RS02415 0.28 -0.5 523,139 - +1.6 523,238 + HGI48_RS02415 0.40 -0.4 523,238 + HGI48_RS02415 0.40 -0.7 523,238 + HGI48_RS02415 0.40 +0.1 523,238 + HGI48_RS02415 0.40 +0.1 523,238 + HGI48_RS02415 0.40 -0.1 523,238 + HGI48_RS02415 0.40 -0.4 523,238 + HGI48_RS02415 0.40 +1.1 523,238 + +0.9 523,238 + HGI48_RS02415 0.40 -0.7 523,239 - HGI48_RS02415 0.40 -0.6 523,239 - HGI48_RS02415 0.40 -0.9 523,291 + HGI48_RS02415 0.47 -1.7 523,291 + HGI48_RS02415 0.47 -0.2 523,291 + HGI48_RS02415 0.47 -1.5 523,292 - HGI48_RS02415 0.47 -2.1 523,292 - HGI48_RS02415 0.47 -1.0 523,292 - HGI48_RS02415 0.47 -0.7 523,340 - HGI48_RS02415 0.53 +1.2 523,363 - HGI48_RS02415 0.55 -0.8 523,418 + HGI48_RS02415 0.62 -0.1 523,419 - HGI48_RS02415 0.62 +0.3 523,451 + HGI48_RS02415 0.66 -0.9 523,451 + HGI48_RS02415 0.66 -1.1 523,451 + HGI48_RS02415 0.66 +1.1 523,452 - HGI48_RS02415 0.66 -1.1 523,454 + HGI48_RS02415 0.66 -1.7 523,454 + HGI48_RS02415 0.66 -0.4 523,454 + HGI48_RS02415 0.66 -1.3 523,454 + HGI48_RS02415 0.66 -0.4 523,454 + HGI48_RS02415 0.66 -2.1 523,454 + HGI48_RS02415 0.66 -0.3 523,454 + HGI48_RS02415 0.66 -2.1 523,454 + HGI48_RS02415 0.66 +0.3 523,455 - HGI48_RS02415 0.66 -1.1 523,455 - HGI48_RS02415 0.66 -0.7 523,455 - HGI48_RS02415 0.66 -0.1 523,455 - HGI48_RS02415 0.66 -1.6 523,455 - HGI48_RS02415 0.66 +1.3 523,455 - HGI48_RS02415 0.66 -1.7 523,477 + HGI48_RS02415 0.69 -0.1 523,478 - HGI48_RS02415 0.69 +1.1 523,478 - -0.1 523,478 - HGI48_RS02415 0.69 -0.1 523,482 - HGI48_RS02415 0.69 +0.1 523,571 + HGI48_RS02415 0.80 +0.5 523,606 + HGI48_RS02415 0.84 -1.7 523,606 + HGI48_RS02415 0.84 +0.9 523,606 + +0.9 523,607 - HGI48_RS02415 0.84 -0.7 523,607 - HGI48_RS02415 0.84 -2.8 523,607 - HGI48_RS02415 0.84 -3.2 523,607 - HGI48_RS02415 0.84 -0.5 523,607 - HGI48_RS02415 0.84 +0.1 523,607 - HGI48_RS02415 0.84 -2.6 523,607 - HGI48_RS02415 0.84 -0.2 523,609 + +0.9 523,609 + HGI48_RS02415 0.85 -0.7 523,609 + HGI48_RS02415 0.85 -0.4 523,610 - HGI48_RS02415 0.85 -0.1 523,752 + +0.3 523,766 + +0.9 523,767 - +0.9 523,767 - +0.4 523,767 - -0.5 523,769 + +0.7 523,769 + -0.3 523,770 - -0.1 523,770 - +0.1 523,770 - +0.3 523,770 - -1.0 523,780 - -0.8 523,787 + -1.1 523,787 + -0.7 523,787 + -0.7 523,788 - -2.1 523,788 - +0.2 523,788 - -0.7 523,788 - -0.5 523,796 + -0.4
Or see this region's nucleotide sequence