Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02350

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02345 and HGI48_RS02350 overlap by 4 nucleotidesHGI48_RS02350 and HGI48_RS02355 are separated by 39 nucleotidesHGI48_RS02355 and HGI48_RS02360 are separated by 234 nucleotides HGI48_RS02345: HGI48_RS02345 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 509,545 to 510,723 _RS02345 HGI48_RS02350: HGI48_RS02350 - Xaa-Pro aminopeptidase, at 510,720 to 512,048 _RS02350 HGI48_RS02355: HGI48_RS02355 - YecA family protein, at 512,088 to 512,672 _RS02355 HGI48_RS02360: HGI48_RS02360 - cell division protein ZapA, at 512,907 to 513,236 _RS02360 Position (kb) 510 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.890 kb on - strand, within HGI48_RS02350at 510.890 kb on - strand, within HGI48_RS02350at 510.918 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.184 kb on - strandat 511.332 kb on - strand, within HGI48_RS02350at 511.332 kb on - strand, within HGI48_RS02350at 511.332 kb on - strandat 511.332 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.527 kb on - strandat 511.527 kb on - strand, within HGI48_RS02350at 511.527 kb on - strand, within HGI48_RS02350at 511.527 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.546 kb on - strand, within HGI48_RS02350at 511.649 kb on - strand, within HGI48_RS02350at 511.649 kb on - strand, within HGI48_RS02350at 511.655 kb on - strand, within HGI48_RS02350at 511.673 kb on - strand, within HGI48_RS02350at 511.755 kb on - strandat 511.950 kb on - strandat 512.033 kb on - strandat 512.172 kb on + strand, within HGI48_RS02355at 512.172 kb on + strand, within HGI48_RS02355at 512.172 kb on + strand, within HGI48_RS02355at 512.172 kb on + strand, within HGI48_RS02355at 512.173 kb on - strand, within HGI48_RS02355at 512.173 kb on - strand, within HGI48_RS02355at 512.176 kb on + strandat 512.176 kb on + strand, within HGI48_RS02355at 512.176 kb on + strand, within HGI48_RS02355at 512.176 kb on + strand, within HGI48_RS02355at 512.177 kb on - strand, within HGI48_RS02355at 512.177 kb on - strand, within HGI48_RS02355at 512.177 kb on - strand, within HGI48_RS02355at 512.177 kb on - strand, within HGI48_RS02355at 512.257 kb on - strand, within HGI48_RS02355at 512.257 kb on - strand, within HGI48_RS02355at 512.257 kb on - strand, within HGI48_RS02355at 512.373 kb on + strandat 512.373 kb on + strand, within HGI48_RS02355at 512.459 kb on - strand, within HGI48_RS02355at 512.574 kb on + strand, within HGI48_RS02355at 512.626 kb on - strandat 512.657 kb on + strandat 512.657 kb on + strandat 512.657 kb on + strandat 512.658 kb on - strandat 512.658 kb on - strandat 512.658 kb on - strandat 512.664 kb on + strandat 512.667 kb on - strandat 512.707 kb on - strandat 512.711 kb on + strandat 512.730 kb on + strandat 512.731 kb on - strandat 512.731 kb on - strandat 512.732 kb on + strandat 512.770 kb on + strandat 512.770 kb on + strandat 512.770 kb on + strandat 512.770 kb on + strandat 512.770 kb on + strandat 512.771 kb on - strandat 512.771 kb on - strandat 512.777 kb on + strandat 512.777 kb on + strandat 512.777 kb on + strandat 512.778 kb on - strandat 512.778 kb on - strandat 512.778 kb on - strandat 512.778 kb on - strandat 512.788 kb on + strandat 512.788 kb on + strandat 512.788 kb on + strandat 512.788 kb on + strandat 512.788 kb on + strandat 512.788 kb on + strandat 512.789 kb on - strandat 512.789 kb on - strandat 512.789 kb on - strandat 512.795 kb on + strandat 512.795 kb on + strandat 512.813 kb on + strandat 512.813 kb on + strandat 512.813 kb on + strandat 512.813 kb on + strandat 512.813 kb on + strandat 512.815 kb on + strandat 512.815 kb on + strandat 512.815 kb on + strandat 512.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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510,890 - HGI48_RS02350 0.13 +1.1
510,890 - HGI48_RS02350 0.13 -1.4
510,918 - HGI48_RS02350 0.15 -0.1
511,008 - HGI48_RS02350 0.22 +0.9
511,008 - HGI48_RS02350 0.22 -0.1
511,008 - HGI48_RS02350 0.22 -0.1
511,184 - -0.7
511,332 - HGI48_RS02350 0.46 -0.9
511,332 - HGI48_RS02350 0.46 -1.5
511,332 - -0.7
511,332 - HGI48_RS02350 0.46 +0.9
511,367 - HGI48_RS02350 0.49 +0.9
511,367 - HGI48_RS02350 0.49 +0.2
511,367 - HGI48_RS02350 0.49 -1.7
511,527 - +0.9
511,527 - HGI48_RS02350 0.61 +0.3
511,527 - HGI48_RS02350 0.61 -1.9
511,527 - HGI48_RS02350 0.61 +0.4
511,539 - HGI48_RS02350 0.62 -0.1
511,539 - HGI48_RS02350 0.62 -0.7
511,539 - HGI48_RS02350 0.62 -0.4
511,546 - HGI48_RS02350 0.62 -0.7
511,649 - HGI48_RS02350 0.70 +0.4
511,649 - HGI48_RS02350 0.70 +0.5
511,655 - HGI48_RS02350 0.70 +0.6
511,673 - HGI48_RS02350 0.72 -0.1
511,755 - -0.1
511,950 - -1.3
512,033 - -0.7
512,172 + HGI48_RS02355 0.14 +0.7
512,172 + HGI48_RS02355 0.14 -1.5
512,172 + HGI48_RS02355 0.14 +1.9
512,172 + HGI48_RS02355 0.14 -0.6
512,173 - HGI48_RS02355 0.15 -1.5
512,173 - HGI48_RS02355 0.15 -0.9
512,176 + +1.9
512,176 + HGI48_RS02355 0.15 +0.2
512,176 + HGI48_RS02355 0.15 -1.0
512,176 + HGI48_RS02355 0.15 -0.1
512,177 - HGI48_RS02355 0.15 +0.2
512,177 - HGI48_RS02355 0.15 -1.0
512,177 - HGI48_RS02355 0.15 +1.4
512,177 - HGI48_RS02355 0.15 +0.4
512,257 - HGI48_RS02355 0.29 -1.5
512,257 - HGI48_RS02355 0.29 -1.5
512,257 - HGI48_RS02355 0.29 -0.6
512,373 + -0.7
512,373 + HGI48_RS02355 0.49 -1.1
512,459 - HGI48_RS02355 0.63 +0.2
512,574 + HGI48_RS02355 0.83 +0.7
512,626 - +0.9
512,657 + -1.5
512,657 + -1.5
512,657 + -0.7
512,658 - -0.7
512,658 - -0.1
512,658 - -0.6
512,664 + +2.2
512,667 - +0.6
512,707 - -0.7
512,711 + -0.7
512,730 + +0.1
512,731 - -1.1
512,731 - -0.7
512,732 + -1.6
512,770 + -1.1
512,770 + -1.1
512,770 + -1.1
512,770 + +0.6
512,770 + -1.7
512,771 - +1.3
512,771 - -0.9
512,777 + +0.9
512,777 + +0.5
512,777 + -0.5
512,778 - +1.2
512,778 - -0.6
512,778 - -1.7
512,778 - +0.3
512,788 + +2.0
512,788 + +1.6
512,788 + +0.5
512,788 + +0.0
512,788 + -1.1
512,788 + +0.4
512,789 - +0.4
512,789 - -0.1
512,789 - -1.5
512,795 + +0.9
512,795 + -0.6
512,813 + +1.3
512,813 + +1.2
512,813 + -1.5
512,813 + +0.9
512,813 + +0.4
512,815 + +0.9
512,815 + -0.6
512,815 + +0.6
512,820 + -0.6

Or see this region's nucleotide sequence