Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01390 and HGI48_RS01395 are separated by 31 nucleotides HGI48_RS01395 and HGI48_RS01400 are separated by 13 nucleotides HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides
HGI48_RS01390: HGI48_RS01390 - AaeX family protein, at 311,856 to 312,059
_RS01390
HGI48_RS01395: HGI48_RS01395 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 312,091 to 313,014
_RS01395
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 312.033 kb on + strand, within HGI48_RS01390 at 312.033 kb on + strand, within HGI48_RS01390 at 312.033 kb on + strand, within HGI48_RS01390 at 312.034 kb on - strand, within HGI48_RS01390 at 312.125 kb on + strand at 312.126 kb on - strand at 312.176 kb on - strand at 312.367 kb on + strand, within HGI48_RS01395 at 312.368 kb on - strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.544 kb on - strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.604 kb on + strand, within HGI48_RS01395 at 312.604 kb on + strand, within HGI48_RS01395 at 312.605 kb on - strand, within HGI48_RS01395 at 312.605 kb on - strand, within HGI48_RS01395 at 312.655 kb on + strand, within HGI48_RS01395 at 312.655 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand at 312.668 kb on - strand, within HGI48_RS01395 at 312.668 kb on - strand, within HGI48_RS01395 at 312.670 kb on - strand, within HGI48_RS01395 at 312.779 kb on + strand, within HGI48_RS01395 at 312.949 kb on - strand at 312.949 kb on - strand at 313.082 kb on - strand at 313.158 kb on + strand at 313.256 kb on - strand at 313.360 kb on - strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.377 kb on - strand, within HGI48_RS01400 at 313.377 kb on - strand at 313.584 kb on - strand, within HGI48_RS01400 at 313.605 kb on + strand, within HGI48_RS01400 at 313.605 kb on + strand, within HGI48_RS01400 at 313.606 kb on - strand, within HGI48_RS01400 at 313.606 kb on - strand, within HGI48_RS01400 at 313.673 kb on - strand, within HGI48_RS01400 at 313.690 kb on - strand, within HGI48_RS01400 at 313.768 kb on - strand, within HGI48_RS01400 at 314.043 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.322 kb on + strand, within HGI48_RS01400 at 314.323 kb on - strand at 314.419 kb on + strand, within HGI48_RS01400 at 314.419 kb on + strand at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.488 kb on + strand, within HGI48_RS01400 at 314.562 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.874 kb on - strand at 314.874 kb on - strand at 314.956 kb on + strand at 314.957 kb on - strand at 314.986 kb on - strand at 314.997 kb on + strand at 315.245 kb on - strand at 315.292 kb on + strand at 315.292 kb on + strand at 315.293 kb on - strand, within HGI48_RS01405 at 315.293 kb on - strand at 315.297 kb on + strand, within HGI48_RS01405 at 315.297 kb on + strand, within HGI48_RS01405 at 315.298 kb on - strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand at 315.324 kb on + strand at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.328 kb on + strand, within HGI48_RS01405 at 315.462 kb on + strand at 315.462 kb on + strand at 315.462 kb on + strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.506 kb on + strand at 315.507 kb on - strand at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 312,033 + HGI48_RS01390 0.87 -2.0 312,033 + HGI48_RS01390 0.87 -2.5 312,033 + HGI48_RS01390 0.87 +1.6 312,034 - HGI48_RS01390 0.87 +0.3 312,125 + +0.4 312,126 - -2.2 312,176 - +1.0 312,367 + HGI48_RS01395 0.30 +0.2 312,368 - HGI48_RS01395 0.30 +0.0 312,370 + HGI48_RS01395 0.30 +1.0 312,370 + HGI48_RS01395 0.30 -0.8 312,370 + HGI48_RS01395 0.30 +1.4 312,544 - HGI48_RS01395 0.49 -0.0 312,590 + HGI48_RS01395 0.54 -0.6 312,590 + HGI48_RS01395 0.54 +0.5 312,590 + HGI48_RS01395 0.54 +1.0 312,590 + HGI48_RS01395 0.54 +0.5 312,590 + HGI48_RS01395 0.54 -1.0 312,590 + HGI48_RS01395 0.54 -0.6 312,590 + -0.6 312,590 + HGI48_RS01395 0.54 -0.0 312,590 + HGI48_RS01395 0.54 +1.3 312,590 + +0.4 312,591 - HGI48_RS01395 0.54 +0.3 312,591 - HGI48_RS01395 0.54 -1.2 312,591 - HGI48_RS01395 0.54 +0.3 312,591 - HGI48_RS01395 0.54 -0.2 312,591 - HGI48_RS01395 0.54 -0.2 312,591 - HGI48_RS01395 0.54 -1.6 312,591 - HGI48_RS01395 0.54 -1.8 312,591 - HGI48_RS01395 0.54 -0.8 312,591 - HGI48_RS01395 0.54 -1.3 312,604 + HGI48_RS01395 0.56 -0.3 312,604 + HGI48_RS01395 0.56 -1.3 312,605 - HGI48_RS01395 0.56 -0.0 312,605 - HGI48_RS01395 0.56 -0.2 312,655 + HGI48_RS01395 0.61 -1.6 312,655 + HGI48_RS01395 0.61 -1.0 312,667 + HGI48_RS01395 0.62 -1.8 312,667 + HGI48_RS01395 0.62 -1.2 312,667 + HGI48_RS01395 0.62 -2.0 312,667 + HGI48_RS01395 0.62 +0.4 312,667 + +1.4 312,668 - HGI48_RS01395 0.62 +1.3 312,668 - HGI48_RS01395 0.62 -0.8 312,670 - HGI48_RS01395 0.63 -1.0 312,779 + HGI48_RS01395 0.74 -1.0 312,949 - -1.3 312,949 - -2.0 313,082 - +0.1 313,158 + -0.0 313,256 - +3.6 313,360 - HGI48_RS01400 0.17 +0.2 313,376 + HGI48_RS01400 0.18 -0.6 313,376 + HGI48_RS01400 0.18 +0.7 313,376 + HGI48_RS01400 0.18 +1.4 313,377 - HGI48_RS01400 0.18 -0.0 313,377 - +0.4 313,584 - HGI48_RS01400 0.29 -1.0 313,605 + HGI48_RS01400 0.30 -0.2 313,605 + HGI48_RS01400 0.30 +1.1 313,606 - HGI48_RS01400 0.30 -1.0 313,606 - HGI48_RS01400 0.30 -1.8 313,673 - HGI48_RS01400 0.33 -2.2 313,690 - HGI48_RS01400 0.34 -0.5 313,768 - HGI48_RS01400 0.38 +0.2 314,043 + HGI48_RS01400 0.52 -2.7 314,172 + HGI48_RS01400 0.59 -0.2 314,172 + HGI48_RS01400 0.59 -0.8 314,173 - +1.4 314,173 - HGI48_RS01400 0.59 +0.2 314,173 - -0.6 314,173 - HGI48_RS01400 0.59 +1.0 314,284 + HGI48_RS01400 0.64 +3.1 314,284 + HGI48_RS01400 0.64 -1.0 314,284 + HGI48_RS01400 0.64 +1.0 314,285 - HGI48_RS01400 0.64 -0.3 314,285 - HGI48_RS01400 0.64 -0.3 314,285 - HGI48_RS01400 0.64 +0.4 314,285 - HGI48_RS01400 0.64 -2.0 314,285 - HGI48_RS01400 0.64 +0.7 314,322 + HGI48_RS01400 0.66 +0.0 314,323 - -0.6 314,419 + HGI48_RS01400 0.71 -0.2 314,419 + +1.4 314,420 - HGI48_RS01400 0.71 +0.6 314,420 - HGI48_RS01400 0.71 +0.7 314,420 - HGI48_RS01400 0.71 -0.8 314,488 + HGI48_RS01400 0.75 -2.0 314,562 + HGI48_RS01400 0.79 -1.6 314,645 + HGI48_RS01400 0.83 -0.5 314,645 + HGI48_RS01400 0.83 +0.7 314,645 + HGI48_RS01400 0.83 +1.8 314,645 + HGI48_RS01400 0.83 -1.6 314,645 + HGI48_RS01400 0.83 +0.3 314,645 + HGI48_RS01400 0.83 +0.7 314,646 - HGI48_RS01400 0.83 -0.0 314,646 - HGI48_RS01400 0.83 +0.6 314,646 - HGI48_RS01400 0.83 -0.6 314,696 + HGI48_RS01400 0.86 +1.0 314,696 + HGI48_RS01400 0.86 +1.0 314,873 + +0.1 314,873 + +0.3 314,873 + -0.0 314,873 + +0.2 314,874 - -1.2 314,874 - -1.0 314,956 + -1.0 314,957 - -1.3 314,986 - -1.0 314,997 + -0.8 315,245 - +2.0 315,292 + +1.0 315,292 + +0.4 315,293 - HGI48_RS01405 0.62 -0.6 315,293 - +0.4 315,297 + HGI48_RS01405 0.62 +2.5 315,297 + HGI48_RS01405 0.62 -0.3 315,298 - HGI48_RS01405 0.63 -1.3 315,324 + HGI48_RS01405 0.68 -0.6 315,324 + HGI48_RS01405 0.68 -0.7 315,324 + HGI48_RS01405 0.68 -0.6 315,324 + HGI48_RS01405 0.68 -0.6 315,324 + +1.7 315,324 + +1.6 315,324 + HGI48_RS01405 0.68 -1.3 315,324 + HGI48_RS01405 0.68 -0.3 315,325 - HGI48_RS01405 0.68 +0.4 315,325 - HGI48_RS01405 0.68 -2.2 315,325 - HGI48_RS01405 0.68 -0.6 315,325 - +0.4 315,325 - HGI48_RS01405 0.68 -0.8 315,325 - +1.0 315,328 + HGI48_RS01405 0.69 -0.0 315,462 + +1.0 315,462 + -2.8 315,462 + +0.4 315,463 - -0.6 315,463 - -1.0 315,463 - -1.0 315,465 + +0.2 315,465 + -1.0 315,465 + +0.6 315,465 + +1.0 315,465 + +0.2 315,465 + -0.7 315,465 + +1.3 315,469 + -2.3 315,469 + +1.2 315,469 + +1.0 315,469 + +1.6 315,469 + -1.3 315,469 + -0.5 315,469 + -0.0 315,469 + -0.4 315,469 + +1.8 315,469 + +0.2 315,469 + -1.2 315,469 + -1.6 315,470 - -0.5 315,470 - -0.6 315,470 - -1.0 315,470 - -1.0 315,470 - +0.2 315,470 - -1.6 315,470 - -0.6 315,470 - +0.3 315,470 - -1.6 315,470 - +2.2 315,473 + -1.0 315,473 + +0.7 315,473 + -0.1 315,474 - -0.0 315,474 - -0.3 315,474 - +2.2 315,506 + +0.2 315,507 - -0.2 315,535 - -1.6 315,538 - +1.5 315,568 + +0.3 315,568 + +1.0 315,568 + -0.6 315,569 - -1.2 315,569 - -2.0 315,569 - -0.3 315,569 - -0.5 315,569 - -1.5 315,569 - +0.1 315,597 + +1.6 315,598 - -0.0 315,598 - -1.0 315,731 + +0.1 315,731 + +1.8 315,731 + +0.4 315,731 + -0.0 315,731 + +1.3 315,731 + -0.0 315,731 + -0.2 315,731 + +0.3 315,731 + -0.0 315,732 - -0.3 315,732 - -0.0 315,732 - +2.7 315,732 - +2.3 315,732 - +0.2 315,733 + -0.3 315,733 + +1.0 315,733 + -0.4 315,734 - -1.6 315,734 - -0.3 315,761 + +0.4 315,776 + -1.0 315,776 + -0.6 315,777 - -0.3 315,777 - -0.4 315,777 - -0.2 315,777 - +1.2 315,777 - -2.3 315,777 - +1.0 315,779 + +0.1 315,806 + -0.8
Or see this region's nucleotide sequence