Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01200 and HGI48_RS01205 are separated by 4 nucleotides HGI48_RS01205 and HGI48_RS01210 are separated by 82 nucleotides HGI48_RS01210 and HGI48_RS01215 are separated by 15 nucleotides
HGI48_RS01200: HGI48_RS01200 - DNA-binding protein HU-alpha, at 268,110 to 268,382
_RS01200
HGI48_RS01205: HGI48_RS01205 - DUF1481 domain-containing protein, at 268,387 to 269,127
_RS01205
HGI48_RS01210: HGI48_RS01210 - phosphoribosylamine--glycine ligase, at 269,210 to 270,499
_RS01210
HGI48_RS01215: HGI48_RS01215 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 270,515 to 272,104
_RS01215
Position (kb) 269
270
271 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 268.381 kb on - strand at 268.394 kb on + strand at 268.395 kb on - strand at 268.395 kb on - strand at 268.494 kb on + strand at 268.494 kb on + strand, within HGI48_RS01205 at 268.503 kb on + strand, within HGI48_RS01205 at 268.504 kb on - strand, within HGI48_RS01205 at 268.504 kb on - strand, within HGI48_RS01205 at 268.522 kb on + strand, within HGI48_RS01205 at 268.522 kb on + strand, within HGI48_RS01205 at 268.569 kb on + strand at 268.569 kb on + strand, within HGI48_RS01205 at 268.596 kb on + strand, within HGI48_RS01205 at 268.622 kb on + strand, within HGI48_RS01205 at 268.693 kb on + strand, within HGI48_RS01205 at 268.693 kb on + strand at 268.693 kb on + strand, within HGI48_RS01205 at 268.693 kb on + strand, within HGI48_RS01205 at 268.693 kb on + strand at 268.694 kb on - strand, within HGI48_RS01205 at 268.694 kb on - strand, within HGI48_RS01205 at 268.694 kb on - strand, within HGI48_RS01205 at 268.694 kb on - strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.783 kb on + strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 268.784 kb on - strand, within HGI48_RS01205 at 269.061 kb on + strand at 269.061 kb on + strand at 269.061 kb on + strand at 269.062 kb on - strand at 269.062 kb on - strand at 269.062 kb on - strand at 269.062 kb on - strand at 269.062 kb on - strand at 269.125 kb on + strand at 269.125 kb on + strand at 269.125 kb on + strand at 269.125 kb on + strand at 269.139 kb on + strand at 269.139 kb on + strand at 269.139 kb on + strand at 269.140 kb on - strand at 269.140 kb on - strand at 269.148 kb on + strand at 269.148 kb on + strand at 269.409 kb on - strand at 269.409 kb on - strand at 269.409 kb on - strand, within HGI48_RS01210 at 269.577 kb on - strand, within HGI48_RS01210 at 269.577 kb on - strand, within HGI48_RS01210 at 269.688 kb on + strand, within HGI48_RS01210 at 269.688 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand at 269.703 kb on + strand, within HGI48_RS01210 at 269.703 kb on + strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.704 kb on - strand, within HGI48_RS01210 at 269.746 kb on + strand, within HGI48_RS01210 at 269.746 kb on + strand, within HGI48_RS01210 at 269.747 kb on - strand, within HGI48_RS01210 at 269.802 kb on + strand, within HGI48_RS01210 at 269.803 kb on - strand, within HGI48_RS01210 at 270.077 kb on - strand, within HGI48_RS01210 at 270.099 kb on + strand at 270.099 kb on + strand, within HGI48_RS01210 at 270.099 kb on + strand at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand, within HGI48_RS01210 at 270.100 kb on - strand at 270.100 kb on - strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.362 kb on + strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand, within HGI48_RS01210 at 270.363 kb on - strand at 270.363 kb on - strand, within HGI48_RS01210 at 270.414 kb on + strand at 270.414 kb on + strand at 270.415 kb on - strand at 270.415 kb on - strand at 270.415 kb on - strand at 270.479 kb on - strand at 270.484 kb on + strand at 270.484 kb on + strand at 270.493 kb on + strand at 270.493 kb on + strand at 270.494 kb on - strand at 270.505 kb on + strand at 270.750 kb on + strand, within HGI48_RS01215 at 270.751 kb on - strand, within HGI48_RS01215 at 270.805 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.020 kb on - strand, within HGI48_RS01215 at 271.139 kb on - strand, within HGI48_RS01215 at 271.183 kb on - strand at 271.194 kb on + strand, within HGI48_RS01215 at 271.194 kb on + strand at 271.321 kb on - strand, within HGI48_RS01215 at 271.385 kb on + strand, within HGI48_RS01215 at 271.385 kb on + strand, within HGI48_RS01215 at 271.385 kb on + strand at 271.385 kb on + strand, within HGI48_RS01215 at 271.386 kb on - strand, within HGI48_RS01215 at 271.386 kb on - strand, within HGI48_RS01215 at 271.387 kb on + strand, within HGI48_RS01215 at 271.387 kb on + strand, within HGI48_RS01215 at 271.389 kb on + strand at 271.389 kb on + strand, within HGI48_RS01215 at 271.389 kb on + strand, within HGI48_RS01215 at 271.390 kb on - strand at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand, within HGI48_RS01215 at 271.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 268,381 - +1.0 268,394 + -1.0 268,395 - +0.4 268,395 - +1.0 268,494 + -0.0 268,494 + HGI48_RS01205 0.14 +0.3 268,503 + HGI48_RS01205 0.16 +1.0 268,504 - HGI48_RS01205 0.16 +0.7 268,504 - HGI48_RS01205 0.16 +1.6 268,522 + HGI48_RS01205 0.18 +0.5 268,522 + HGI48_RS01205 0.18 -1.3 268,569 + -0.6 268,569 + HGI48_RS01205 0.25 -1.2 268,596 + HGI48_RS01205 0.28 -0.0 268,622 + HGI48_RS01205 0.32 +1.3 268,693 + HGI48_RS01205 0.41 -1.0 268,693 + +1.0 268,693 + HGI48_RS01205 0.41 -2.3 268,693 + HGI48_RS01205 0.41 -0.0 268,693 + +1.0 268,694 - HGI48_RS01205 0.41 -1.3 268,694 - HGI48_RS01205 0.41 -0.3 268,694 - HGI48_RS01205 0.41 -1.5 268,694 - HGI48_RS01205 0.41 -1.0 268,783 + HGI48_RS01205 0.53 -0.7 268,783 + HGI48_RS01205 0.53 -0.3 268,783 + HGI48_RS01205 0.53 -0.2 268,783 + HGI48_RS01205 0.53 -0.4 268,783 + +1.0 268,783 + HGI48_RS01205 0.53 +0.6 268,783 + HGI48_RS01205 0.53 +0.7 268,783 + HGI48_RS01205 0.53 -0.4 268,783 + HGI48_RS01205 0.53 +0.6 268,783 + HGI48_RS01205 0.53 -0.2 268,784 - HGI48_RS01205 0.54 -1.3 268,784 - HGI48_RS01205 0.54 +0.1 268,784 - HGI48_RS01205 0.54 +0.1 268,784 - HGI48_RS01205 0.54 -1.5 268,784 - HGI48_RS01205 0.54 -0.2 268,784 - HGI48_RS01205 0.54 -1.0 269,061 + -1.2 269,061 + -0.0 269,061 + -1.2 269,062 - +0.1 269,062 - -0.0 269,062 - -1.0 269,062 - -0.3 269,062 - +0.4 269,125 + +0.5 269,125 + -0.6 269,125 + -0.5 269,125 + -1.0 269,139 + -1.3 269,139 + -0.6 269,139 + +0.4 269,140 - -2.2 269,140 - -1.3 269,148 + +0.4 269,148 + +1.0 269,409 - -0.6 269,409 - -0.6 269,409 - HGI48_RS01210 0.15 -0.0 269,577 - HGI48_RS01210 0.28 -1.6 269,577 - HGI48_RS01210 0.28 -1.8 269,688 + HGI48_RS01210 0.37 -1.8 269,688 + HGI48_RS01210 0.37 -3.2 269,703 + HGI48_RS01210 0.38 -0.4 269,703 + -0.0 269,703 + HGI48_RS01210 0.38 +0.3 269,703 + HGI48_RS01210 0.38 -0.8 269,704 - HGI48_RS01210 0.38 -2.2 269,704 - HGI48_RS01210 0.38 -2.0 269,704 - HGI48_RS01210 0.38 -2.1 269,704 - HGI48_RS01210 0.38 -2.5 269,704 - HGI48_RS01210 0.38 -1.0 269,704 - HGI48_RS01210 0.38 -2.0 269,746 + HGI48_RS01210 0.42 -2.7 269,746 + HGI48_RS01210 0.42 -1.8 269,747 - HGI48_RS01210 0.42 -0.4 269,802 + HGI48_RS01210 0.46 -1.0 269,803 - HGI48_RS01210 0.46 +0.2 270,077 - HGI48_RS01210 0.67 -0.8 270,099 + +1.6 270,099 + HGI48_RS01210 0.69 -0.0 270,099 + -0.6 270,100 - HGI48_RS01210 0.69 -1.4 270,100 - HGI48_RS01210 0.69 -1.5 270,100 - HGI48_RS01210 0.69 -1.5 270,100 - -0.0 270,100 - HGI48_RS01210 0.69 -1.0 270,362 + HGI48_RS01210 0.89 -1.0 270,362 + HGI48_RS01210 0.89 -1.3 270,362 + HGI48_RS01210 0.89 -1.3 270,362 + HGI48_RS01210 0.89 -1.9 270,362 + HGI48_RS01210 0.89 -0.0 270,362 + HGI48_RS01210 0.89 -0.2 270,362 + HGI48_RS01210 0.89 +0.6 270,363 - HGI48_RS01210 0.89 -0.0 270,363 - HGI48_RS01210 0.89 -2.6 270,363 - HGI48_RS01210 0.89 -0.0 270,363 - -0.0 270,363 - HGI48_RS01210 0.89 -2.4 270,414 + +1.4 270,414 + -1.7 270,415 - -1.6 270,415 - +0.5 270,415 - -1.6 270,479 - -2.6 270,484 + -0.6 270,484 + -2.0 270,493 + -1.3 270,493 + -2.6 270,494 - -2.3 270,505 + +1.6 270,750 + HGI48_RS01215 0.15 -1.3 270,751 - HGI48_RS01215 0.15 -2.2 270,805 - HGI48_RS01215 0.18 -2.0 271,020 - HGI48_RS01215 0.32 -5.2 271,020 - HGI48_RS01215 0.32 -0.8 271,020 - HGI48_RS01215 0.32 -0.8 271,139 - HGI48_RS01215 0.39 -1.1 271,183 - -0.0 271,194 + HGI48_RS01215 0.43 -1.1 271,194 + -0.6 271,321 - HGI48_RS01215 0.51 +0.5 271,385 + HGI48_RS01215 0.55 +0.7 271,385 + HGI48_RS01215 0.55 -1.0 271,385 + -0.6 271,385 + HGI48_RS01215 0.55 -1.8 271,386 - HGI48_RS01215 0.55 -1.0 271,386 - HGI48_RS01215 0.55 -2.3 271,387 + HGI48_RS01215 0.55 -1.6 271,387 + HGI48_RS01215 0.55 -0.0 271,389 + -0.6 271,389 + HGI48_RS01215 0.55 +0.2 271,389 + HGI48_RS01215 0.55 +1.2 271,390 - +1.0 271,390 - HGI48_RS01215 0.55 -1.0 271,390 - HGI48_RS01215 0.55 -1.6 271,390 - HGI48_RS01215 0.55 +1.0 271,390 - +0.4
Or see this region's nucleotide sequence