Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01170

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01160 and HGI48_RS01165 are separated by 1 nucleotidesHGI48_RS01165 and HGI48_RS01170 overlap by 1 nucleotidesHGI48_RS01170 and HGI48_RS01175 are separated by 431 nucleotidesHGI48_RS01175 and HGI48_RS01180 are separated by 105 nucleotides HGI48_RS01160: HGI48_RS01160 - HesA/MoeB/ThiF family protein, at 260,293 to 261,045 _RS01160 HGI48_RS01165: HGI48_RS01165 - thiamine phosphate synthase, at 261,047 to 261,682 _RS01165 HGI48_RS01170: HGI48_RS01170 - phosphomethylpyrimidine synthase ThiC, at 261,682 to 263,553 _RS01170 HGI48_RS01175: HGI48_RS01175 - sigma D regulator, at 263,985 to 264,434 _RS01175 HGI48_RS01180: HGI48_RS01180 - NAD(+) diphosphatase, at 264,540 to 265,313 _RS01180 Position (kb) 261 262 263 264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 260.854 kb on + strand, within HGI48_RS01160at 260.854 kb on + strandat 260.854 kb on + strandat 260.906 kb on + strand, within HGI48_RS01160at 260.906 kb on + strand, within HGI48_RS01160at 260.907 kb on - strand, within HGI48_RS01160at 260.907 kb on - strand, within HGI48_RS01160at 261.025 kb on - strandat 261.025 kb on - strandat 261.025 kb on - strandat 261.048 kb on + strandat 261.078 kb on - strandat 261.078 kb on - strandat 261.295 kb on + strand, within HGI48_RS01165at 261.295 kb on + strandat 261.310 kb on + strandat 261.310 kb on + strand, within HGI48_RS01165at 261.311 kb on - strand, within HGI48_RS01165at 261.311 kb on - strand, within HGI48_RS01165at 261.312 kb on + strandat 261.312 kb on + strand, within HGI48_RS01165at 261.312 kb on + strand, within HGI48_RS01165at 261.312 kb on + strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strand, within HGI48_RS01165at 261.313 kb on - strandat 261.313 kb on - strand, within HGI48_RS01165at 261.377 kb on + strand, within HGI48_RS01165at 261.437 kb on + strand, within HGI48_RS01165at 261.437 kb on + strand, within HGI48_RS01165at 261.437 kb on + strand, within HGI48_RS01165at 261.438 kb on - strand, within HGI48_RS01165at 261.438 kb on - strand, within HGI48_RS01165at 261.445 kb on - strand, within HGI48_RS01165at 261.474 kb on + strand, within HGI48_RS01165at 261.475 kb on - strand, within HGI48_RS01165at 261.572 kb on + strand, within HGI48_RS01165at 261.572 kb on + strand, within HGI48_RS01165at 261.572 kb on + strand, within HGI48_RS01165at 261.573 kb on - strand, within HGI48_RS01165at 261.573 kb on - strand, within HGI48_RS01165at 261.584 kb on - strand, within HGI48_RS01165at 261.719 kb on + strandat 261.720 kb on - strandat 261.720 kb on - strandat 261.721 kb on + strandat 261.721 kb on + strandat 261.721 kb on + strandat 261.721 kb on + strandat 261.721 kb on + strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.722 kb on - strandat 261.809 kb on + strandat 261.828 kb on + strandat 261.829 kb on - strandat 261.878 kb on - strand, within HGI48_RS01170at 262.051 kb on + strand, within HGI48_RS01170at 262.059 kb on - strand, within HGI48_RS01170at 262.124 kb on + strand, within HGI48_RS01170at 262.124 kb on + strand, within HGI48_RS01170at 262.125 kb on - strand, within HGI48_RS01170at 262.125 kb on - strand, within HGI48_RS01170at 262.125 kb on - strandat 262.125 kb on - strand, within HGI48_RS01170at 262.222 kb on + strand, within HGI48_RS01170at 262.223 kb on - strand, within HGI48_RS01170at 262.223 kb on - strand, within HGI48_RS01170at 262.223 kb on - strand, within HGI48_RS01170at 262.229 kb on + strand, within HGI48_RS01170at 262.294 kb on + strand, within HGI48_RS01170at 262.294 kb on + strandat 262.294 kb on + strand, within HGI48_RS01170at 262.294 kb on + strand, within HGI48_RS01170at 262.295 kb on - strand, within HGI48_RS01170at 262.295 kb on - strand, within HGI48_RS01170at 262.332 kb on - strand, within HGI48_RS01170at 262.332 kb on - strand, within HGI48_RS01170at 262.420 kb on + strand, within HGI48_RS01170at 262.491 kb on - strand, within HGI48_RS01170at 262.491 kb on - strand, within HGI48_RS01170at 262.527 kb on + strand, within HGI48_RS01170at 262.527 kb on + strand, within HGI48_RS01170at 262.528 kb on - strand, within HGI48_RS01170at 262.623 kb on - strand, within HGI48_RS01170at 262.718 kb on + strandat 262.718 kb on + strand, within HGI48_RS01170at 262.719 kb on - strand, within HGI48_RS01170at 262.719 kb on - strand, within HGI48_RS01170at 262.719 kb on - strand, within HGI48_RS01170at 262.722 kb on + strand, within HGI48_RS01170at 262.722 kb on + strand, within HGI48_RS01170at 262.723 kb on - strand, within HGI48_RS01170at 262.723 kb on - strand, within HGI48_RS01170at 262.782 kb on + strand, within HGI48_RS01170at 262.782 kb on + strandat 262.783 kb on - strand, within HGI48_RS01170at 262.783 kb on - strand, within HGI48_RS01170at 262.783 kb on - strand, within HGI48_RS01170at 262.783 kb on - strand, within HGI48_RS01170at 262.783 kb on - strand, within HGI48_RS01170at 262.783 kb on - strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.784 kb on + strand, within HGI48_RS01170at 262.785 kb on - strand, within HGI48_RS01170at 262.785 kb on - strand, within HGI48_RS01170at 262.785 kb on - strand, within HGI48_RS01170at 262.785 kb on - strand, within HGI48_RS01170at 262.918 kb on - strandat 263.098 kb on - strand, within HGI48_RS01170at 263.137 kb on - strand, within HGI48_RS01170at 263.153 kb on + strand, within HGI48_RS01170at 263.154 kb on - strand, within HGI48_RS01170at 263.154 kb on - strand, within HGI48_RS01170at 263.154 kb on - strand, within HGI48_RS01170at 263.154 kb on - strand, within HGI48_RS01170at 263.154 kb on - strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.156 kb on + strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.157 kb on - strand, within HGI48_RS01170at 263.193 kb on + strand, within HGI48_RS01170at 263.193 kb on + strand, within HGI48_RS01170at 263.194 kb on - strand, within HGI48_RS01170at 263.194 kb on - strand, within HGI48_RS01170at 263.341 kb on + strand, within HGI48_RS01170at 263.341 kb on + strand, within HGI48_RS01170at 263.341 kb on + strand, within HGI48_RS01170at 263.341 kb on + strand, within HGI48_RS01170at 263.342 kb on - strand, within HGI48_RS01170at 263.342 kb on - strand, within HGI48_RS01170at 263.415 kb on - strandat 263.415 kb on - strandat 263.507 kb on + strandat 263.508 kb on - strandat 263.508 kb on - strandat 263.508 kb on - strandat 263.508 kb on - strandat 263.554 kb on - strandat 263.625 kb on + strandat 263.667 kb on + strandat 263.667 kb on + strandat 263.667 kb on + strandat 263.667 kb on + strandat 263.685 kb on + strandat 263.770 kb on + strandat 263.820 kb on + strandat 263.820 kb on + strandat 263.820 kb on + strandat 263.821 kb on - strandat 263.841 kb on + strandat 263.841 kb on + strandat 263.841 kb on + strandat 263.841 kb on + strandat 263.841 kb on + strandat 263.841 kb on + strandat 263.842 kb on - strandat 263.842 kb on - strandat 263.842 kb on - strandat 263.842 kb on - strandat 263.842 kb on - strandat 263.947 kb on + strandat 263.947 kb on + strandat 263.947 kb on + strandat 263.947 kb on + strandat 263.947 kb on + strandat 263.948 kb on - strandat 263.948 kb on - strandat 263.948 kb on - strandat 263.963 kb on + strandat 263.963 kb on + strandat 263.963 kb on + strandat 263.963 kb on + strandat 263.964 kb on - strandat 263.964 kb on - strandat 263.964 kb on - strandat 263.964 kb on - strandat 263.964 kb on - strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.994 kb on + strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 263.995 kb on - strandat 264.121 kb on + strand, within HGI48_RS01175at 264.121 kb on + strand, within HGI48_RS01175at 264.121 kb on + strand, within HGI48_RS01175at 264.121 kb on + strand, within HGI48_RS01175at 264.121 kb on + strand, within HGI48_RS01175at 264.121 kb on + strand, within HGI48_RS01175at 264.122 kb on - strand, within HGI48_RS01175at 264.229 kb on + strandat 264.229 kb on + strand, within HGI48_RS01175at 264.229 kb on + strand, within HGI48_RS01175at 264.230 kb on - strand, within HGI48_RS01175at 264.256 kb on + strand, within HGI48_RS01175at 264.256 kb on + strand, within HGI48_RS01175at 264.256 kb on + strand, within HGI48_RS01175at 264.256 kb on + strandat 264.257 kb on - strandat 264.257 kb on - strand, within HGI48_RS01175at 264.257 kb on - strand, within HGI48_RS01175at 264.321 kb on - strand, within HGI48_RS01175at 264.334 kb on + strand, within HGI48_RS01175at 264.334 kb on + strand, within HGI48_RS01175at 264.335 kb on - strand, within HGI48_RS01175at 264.337 kb on + strandat 264.338 kb on - strand, within HGI48_RS01175at 264.338 kb on - strandat 264.388 kb on + strand, within HGI48_RS01175at 264.388 kb on + strand, within HGI48_RS01175at 264.388 kb on + strand, within HGI48_RS01175at 264.389 kb on - strand, within HGI48_RS01175at 264.389 kb on - strand, within HGI48_RS01175at 264.389 kb on - strand, within HGI48_RS01175at 264.389 kb on - strand, within HGI48_RS01175at 264.420 kb on + strandat 264.421 kb on - strandat 264.421 kb on - strandat 264.421 kb on - strandat 264.454 kb on + strandat 264.455 kb on - strandat 264.455 kb on - strandat 264.455 kb on - strandat 264.475 kb on + strandat 264.481 kb on + strandat 264.482 kb on - strandat 264.482 kb on - strandat 264.485 kb on + strandat 264.485 kb on + strandat 264.486 kb on - strandat 264.493 kb on + strandat 264.494 kb on - strandat 264.499 kb on + strandat 264.499 kb on + strandat 264.499 kb on + strandat 264.518 kb on + strandat 264.519 kb on - strandat 264.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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260,854 + HGI48_RS01160 0.75 -0.1
260,854 + +1.0
260,854 + +0.4
260,906 + HGI48_RS01160 0.81 -0.2
260,906 + HGI48_RS01160 0.81 -1.6
260,907 - HGI48_RS01160 0.82 -2.0
260,907 - HGI48_RS01160 0.82 +0.8
261,025 - +0.3
261,025 - -0.0
261,025 - -0.3
261,048 + -1.2
261,078 - -0.2
261,078 - -2.5
261,295 + HGI48_RS01165 0.39 -0.3
261,295 + +1.0
261,310 + +0.4
261,310 + HGI48_RS01165 0.41 -1.8
261,311 - HGI48_RS01165 0.42 -0.3
261,311 - HGI48_RS01165 0.42 +1.0
261,312 + -0.0
261,312 + HGI48_RS01165 0.42 -0.3
261,312 + HGI48_RS01165 0.42 +1.3
261,312 + HGI48_RS01165 0.42 +0.4
261,313 - HGI48_RS01165 0.42 -1.6
261,313 - HGI48_RS01165 0.42 -0.0
261,313 - HGI48_RS01165 0.42 -0.0
261,313 - HGI48_RS01165 0.42 +0.6
261,313 - HGI48_RS01165 0.42 -0.3
261,313 - HGI48_RS01165 0.42 -0.0
261,313 - HGI48_RS01165 0.42 +1.2
261,313 - +1.4
261,313 - HGI48_RS01165 0.42 -0.2
261,377 + HGI48_RS01165 0.52 -0.8
261,437 + HGI48_RS01165 0.61 -1.0
261,437 + HGI48_RS01165 0.61 -0.0
261,437 + HGI48_RS01165 0.61 -1.2
261,438 - HGI48_RS01165 0.61 -1.0
261,438 - HGI48_RS01165 0.61 -0.0
261,445 - HGI48_RS01165 0.63 -2.6
261,474 + HGI48_RS01165 0.67 +0.2
261,475 - HGI48_RS01165 0.67 -2.7
261,572 + HGI48_RS01165 0.83 +0.2
261,572 + HGI48_RS01165 0.83 -0.9
261,572 + HGI48_RS01165 0.83 -0.7
261,573 - HGI48_RS01165 0.83 -1.9
261,573 - HGI48_RS01165 0.83 -2.2
261,584 - HGI48_RS01165 0.84 +0.3
261,719 + -0.0
261,720 - +2.6
261,720 - +0.4
261,721 + +0.2
261,721 + -0.4
261,721 + -2.7
261,721 + -1.5
261,721 + -0.9
261,722 - +0.4
261,722 - -2.0
261,722 - -1.8
261,722 - -0.8
261,722 - -0.7
261,722 - -0.6
261,722 - -0.8
261,722 - +1.7
261,809 + -0.3
261,828 + -1.6
261,829 - +0.7
261,878 - HGI48_RS01170 0.10 -2.3
262,051 + HGI48_RS01170 0.20 -1.3
262,059 - HGI48_RS01170 0.20 -0.6
262,124 + HGI48_RS01170 0.24 +0.1
262,124 + HGI48_RS01170 0.24 +0.4
262,125 - HGI48_RS01170 0.24 +1.1
262,125 - HGI48_RS01170 0.24 +0.1
262,125 - +1.6
262,125 - HGI48_RS01170 0.24 +0.2
262,222 + HGI48_RS01170 0.29 -0.8
262,223 - HGI48_RS01170 0.29 +1.0
262,223 - HGI48_RS01170 0.29 +0.7
262,223 - HGI48_RS01170 0.29 -0.3
262,229 + HGI48_RS01170 0.29 -0.8
262,294 + HGI48_RS01170 0.33 -1.3
262,294 + +1.0
262,294 + HGI48_RS01170 0.33 -0.2
262,294 + HGI48_RS01170 0.33 +1.0
262,295 - HGI48_RS01170 0.33 +0.5
262,295 - HGI48_RS01170 0.33 -0.0
262,332 - HGI48_RS01170 0.35 -0.9
262,332 - HGI48_RS01170 0.35 -1.0
262,420 + HGI48_RS01170 0.39 -0.9
262,491 - HGI48_RS01170 0.43 +1.1
262,491 - HGI48_RS01170 0.43 -1.6
262,527 + HGI48_RS01170 0.45 +0.0
262,527 + HGI48_RS01170 0.45 +0.3
262,528 - HGI48_RS01170 0.45 -0.8
262,623 - HGI48_RS01170 0.50 -0.0
262,718 + -0.0
262,718 + HGI48_RS01170 0.55 +1.5
262,719 - HGI48_RS01170 0.55 -0.7
262,719 - HGI48_RS01170 0.55 +1.0
262,719 - HGI48_RS01170 0.55 -0.3
262,722 + HGI48_RS01170 0.56 +0.5
262,722 + HGI48_RS01170 0.56 +1.4
262,723 - HGI48_RS01170 0.56 -0.8
262,723 - HGI48_RS01170 0.56 -1.2
262,782 + HGI48_RS01170 0.59 -0.5
262,782 + +0.4
262,783 - HGI48_RS01170 0.59 -2.0
262,783 - HGI48_RS01170 0.59 +0.8
262,783 - HGI48_RS01170 0.59 +1.0
262,783 - HGI48_RS01170 0.59 +0.2
262,783 - HGI48_RS01170 0.59 -0.2
262,783 - HGI48_RS01170 0.59 -1.6
262,784 + HGI48_RS01170 0.59 +1.3
262,784 + HGI48_RS01170 0.59 +0.1
262,784 + HGI48_RS01170 0.59 -0.2
262,784 + HGI48_RS01170 0.59 -0.6
262,784 + HGI48_RS01170 0.59 -0.8
262,784 + HGI48_RS01170 0.59 +0.1
262,785 - HGI48_RS01170 0.59 -0.2
262,785 - HGI48_RS01170 0.59 +0.2
262,785 - HGI48_RS01170 0.59 -2.3
262,785 - HGI48_RS01170 0.59 +0.7
262,918 - -0.6
263,098 - HGI48_RS01170 0.76 +1.2
263,137 - HGI48_RS01170 0.78 -1.9
263,153 + HGI48_RS01170 0.79 +0.4
263,154 - HGI48_RS01170 0.79 -0.6
263,154 - HGI48_RS01170 0.79 -1.0
263,154 - HGI48_RS01170 0.79 +1.8
263,154 - HGI48_RS01170 0.79 +0.8
263,154 - HGI48_RS01170 0.79 -2.2
263,156 + HGI48_RS01170 0.79 +1.3
263,156 + HGI48_RS01170 0.79 +0.7
263,156 + HGI48_RS01170 0.79 -0.4
263,156 + HGI48_RS01170 0.79 +0.3
263,156 + HGI48_RS01170 0.79 -1.0
263,156 + HGI48_RS01170 0.79 +0.1
263,157 - HGI48_RS01170 0.79 -1.0
263,157 - HGI48_RS01170 0.79 -0.3
263,157 - HGI48_RS01170 0.79 -1.2
263,157 - HGI48_RS01170 0.79 -2.5
263,157 - HGI48_RS01170 0.79 +0.1
263,157 - HGI48_RS01170 0.79 -1.0
263,193 + HGI48_RS01170 0.81 -1.2
263,193 + HGI48_RS01170 0.81 -0.2
263,194 - HGI48_RS01170 0.81 -1.0
263,194 - HGI48_RS01170 0.81 -0.2
263,341 + HGI48_RS01170 0.89 -0.3
263,341 + HGI48_RS01170 0.89 +1.1
263,341 + HGI48_RS01170 0.89 -0.8
263,341 + HGI48_RS01170 0.89 -0.2
263,342 - HGI48_RS01170 0.89 -1.6
263,342 - HGI48_RS01170 0.89 -0.6
263,415 - +1.0
263,415 - -1.3
263,507 + -0.1
263,508 - -1.3
263,508 - +1.0
263,508 - -0.0
263,508 - +0.6
263,554 - +1.0
263,625 + -1.0
263,667 + -0.6
263,667 + -0.4
263,667 + -1.8
263,667 + +1.4
263,685 + -2.3
263,770 + -1.0
263,820 + -0.9
263,820 + +1.6
263,820 + -0.0
263,821 - -0.1
263,841 + +0.8
263,841 + +2.0
263,841 + +0.3
263,841 + -1.8
263,841 + +0.5
263,841 + -0.0
263,842 - -0.4
263,842 - -1.6
263,842 - -1.3
263,842 - +0.2
263,842 - -0.6
263,947 + -0.1
263,947 + -1.3
263,947 + +1.2
263,947 + -1.0
263,947 + +0.7
263,948 - -1.3
263,948 - +0.6
263,948 - +1.3
263,963 + -1.8
263,963 + -0.6
263,963 + -0.6
263,963 + -0.5
263,964 - +1.0
263,964 - +0.7
263,964 - +0.6
263,964 - +0.4
263,964 - +0.5
263,994 + +0.2
263,994 + +0.6
263,994 + -1.0
263,994 + +1.8
263,994 + -0.2
263,994 + -0.3
263,994 + -0.0
263,995 - +0.2
263,995 - -0.4
263,995 - +0.7
263,995 - +1.0
263,995 - +0.8
263,995 - -0.7
263,995 - -1.6
264,121 + HGI48_RS01175 0.30 -0.6
264,121 + HGI48_RS01175 0.30 +0.4
264,121 + HGI48_RS01175 0.30 +0.4
264,121 + HGI48_RS01175 0.30 -0.8
264,121 + HGI48_RS01175 0.30 +0.7
264,121 + HGI48_RS01175 0.30 -0.3
264,122 - HGI48_RS01175 0.30 -0.5
264,229 + +2.8
264,229 + HGI48_RS01175 0.54 -0.2
264,229 + HGI48_RS01175 0.54 -0.6
264,230 - HGI48_RS01175 0.54 +1.3
264,256 + HGI48_RS01175 0.60 -0.0
264,256 + HGI48_RS01175 0.60 +1.2
264,256 + HGI48_RS01175 0.60 +0.8
264,256 + +2.2
264,257 - +1.4
264,257 - HGI48_RS01175 0.60 -1.0
264,257 - HGI48_RS01175 0.60 -0.0
264,321 - HGI48_RS01175 0.75 -0.4
264,334 + HGI48_RS01175 0.78 -0.6
264,334 + HGI48_RS01175 0.78 +0.6
264,335 - HGI48_RS01175 0.78 +0.0
264,337 + +1.6
264,338 - HGI48_RS01175 0.78 -0.6
264,338 - +1.4
264,388 + HGI48_RS01175 0.90 +1.0
264,388 + HGI48_RS01175 0.90 +0.5
264,388 + HGI48_RS01175 0.90 -1.3
264,389 - HGI48_RS01175 0.90 -1.8
264,389 - HGI48_RS01175 0.90 +2.2
264,389 - HGI48_RS01175 0.90 +0.5
264,389 - HGI48_RS01175 0.90 +1.0
264,420 + -2.7
264,421 - +0.6
264,421 - -1.8
264,421 - -0.0
264,454 + -0.7
264,455 - +1.0
264,455 - -0.0
264,455 - -2.0
264,475 + -1.6
264,481 + +0.2
264,482 - -1.7
264,482 - +1.6
264,485 + +0.4
264,485 + -0.0
264,486 - -1.3
264,493 + -0.6
264,494 - -1.0
264,499 + -0.7
264,499 + -0.0
264,499 + +1.0
264,518 + -1.8
264,519 - -0.3
264,533 - -1.3

Or see this region's nucleotide sequence