Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01090 and HGI48_RS01095 are separated by 107 nucleotides HGI48_RS01095 and HGI48_RS01100 are separated by 320 nucleotides
HGI48_RS01090: HGI48_RS01090 - DNA-directed RNA polymerase subunit beta, at 241,622 to 245,650
_RS01090
HGI48_RS01095: HGI48_RS01095 - DNA-directed RNA polymerase subunit beta', at 245,758 to 249,981
_RS01095
HGI48_RS01100: HGI48_RS01100 - DUF1176 domain-containing protein, at 250,302 to 251,399
_RS01100
Position (kb) 245
246
247
248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.648 kb on + strand at 249.980 kb on - strand at 250.039 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.048 kb on - strand at 250.048 kb on - strand at 250.048 kb on - strand at 250.067 kb on + strand at 250.072 kb on - strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.099 kb on - strand at 250.099 kb on - strand at 250.136 kb on + strand at 250.157 kb on + strand at 250.157 kb on + strand at 250.182 kb on + strand at 250.182 kb on + strand at 250.183 kb on - strand at 250.183 kb on - strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.265 kb on + strand at 250.266 kb on - strand at 250.266 kb on - strand at 250.266 kb on - strand at 250.267 kb on + strand at 250.267 kb on + strand at 250.267 kb on + strand at 250.268 kb on - strand at 250.289 kb on + strand at 250.289 kb on + strand at 250.313 kb on + strand at 250.314 kb on - strand at 250.314 kb on - strand at 250.408 kb on + strand at 250.409 kb on - strand at 250.409 kb on - strand at 250.427 kb on + strand, within HGI48_RS01100 at 250.427 kb on + strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.473 kb on + strand, within HGI48_RS01100 at 250.544 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand at 250.629 kb on + strand, within HGI48_RS01100 at 250.630 kb on - strand, within HGI48_RS01100 at 250.637 kb on + strand, within HGI48_RS01100 at 250.730 kb on + strand, within HGI48_RS01100 at 250.822 kb on + strand, within HGI48_RS01100 at 250.822 kb on + strand, within HGI48_RS01100 at 250.893 kb on + strand, within HGI48_RS01100 at 250.893 kb on + strand, within HGI48_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 245,648 + -0.2 249,980 - -1.2 250,039 + -1.0 250,047 + +1.6 250,047 + +0.7 250,047 + +1.0 250,047 + +2.0 250,047 + -1.0 250,048 - -0.6 250,048 - -0.5 250,048 - +1.0 250,067 + -0.2 250,072 - -0.6 250,098 + -0.3 250,098 + -0.4 250,098 + +0.8 250,099 - -0.3 250,099 - -0.3 250,136 + +1.0 250,157 + -2.0 250,157 + +0.2 250,182 + -0.8 250,182 + -0.0 250,183 - -1.3 250,183 - +0.2 250,256 + -0.2 250,256 + -1.0 250,256 + -0.2 250,256 + -1.0 250,256 + +2.6 250,257 - -1.6 250,257 - -0.0 250,257 - -1.8 250,257 - +2.0 250,257 - -0.6 250,257 - +1.0 250,257 - -0.6 250,265 + +1.4 250,266 - +0.2 250,266 - +0.3 250,266 - +1.0 250,267 + -0.8 250,267 + -0.7 250,267 + -1.9 250,268 - +0.2 250,289 + +0.4 250,289 + +0.7 250,313 + +0.2 250,314 - +1.3 250,314 - +1.3 250,408 + +0.0 250,409 - +0.2 250,409 - -0.3 250,427 + HGI48_RS01100 0.11 -0.2 250,427 + HGI48_RS01100 0.11 +0.6 250,428 - HGI48_RS01100 0.11 +0.2 250,428 - HGI48_RS01100 0.11 -0.4 250,428 - HGI48_RS01100 0.11 -1.1 250,433 + HGI48_RS01100 0.12 +0.9 250,433 + +1.6 250,433 + HGI48_RS01100 0.12 -1.0 250,433 + HGI48_RS01100 0.12 +0.3 250,433 + HGI48_RS01100 0.12 +0.8 250,433 + HGI48_RS01100 0.12 -0.6 250,433 + HGI48_RS01100 0.12 +0.7 250,434 - HGI48_RS01100 0.12 +0.3 250,434 - HGI48_RS01100 0.12 +0.1 250,434 - HGI48_RS01100 0.12 -0.3 250,473 + HGI48_RS01100 0.16 +0.4 250,544 + HGI48_RS01100 0.22 +1.9 250,560 + HGI48_RS01100 0.23 -0.7 250,560 + HGI48_RS01100 0.23 -0.8 250,560 + -0.0 250,629 + HGI48_RS01100 0.30 +0.4 250,630 - HGI48_RS01100 0.30 +0.6 250,637 + HGI48_RS01100 0.31 -0.4 250,730 + HGI48_RS01100 0.39 +0.2 250,822 + HGI48_RS01100 0.47 -2.0 250,822 + HGI48_RS01100 0.47 -0.3 250,893 + HGI48_RS01100 0.54 +0.6 250,893 + HGI48_RS01100 0.54 +0.2
Or see this region's nucleotide sequence