Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01090

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01080 and HGI48_RS01085 are separated by 66 nucleotidesHGI48_RS01085 and HGI48_RS01090 are separated by 323 nucleotidesHGI48_RS01090 and HGI48_RS01095 are separated by 107 nucleotides HGI48_RS01080: HGI48_RS01080 - 50S ribosomal protein L10, at 240,369 to 240,866 _RS01080 HGI48_RS01085: HGI48_RS01085 - 50S ribosomal protein L7/L12, at 240,933 to 241,298 _RS01085 HGI48_RS01090: HGI48_RS01090 - DNA-directed RNA polymerase subunit beta, at 241,622 to 245,650 _RS01090 HGI48_RS01095: HGI48_RS01095 - DNA-directed RNA polymerase subunit beta', at 245,758 to 249,981 _RS01095 Position (kb) 241 242 243 244 245 246Strain fitness (log2 ratio) -2 -1 0 1at 241.445 kb on + strandat 241.445 kb on + strandat 241.445 kb on + strandat 241.445 kb on + strandat 241.445 kb on + strandat 241.448 kb on + strandat 241.476 kb on + strandat 245.648 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
241,445 + -0.6
241,445 + -1.8
241,445 + +0.2
241,445 + -1.0
241,445 + -0.6
241,448 + -1.5
241,476 + +1.0
245,648 + -0.2

Or see this region's nucleotide sequence