Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00815 and HGI48_RS00820 are separated by 104 nucleotides HGI48_RS00820 and HGI48_RS00825 are separated by 218 nucleotides
HGI48_RS00810: HGI48_RS00810 - DMT family transporter, at 184,053 to 184,952
_RS00810
HGI48_RS00815: HGI48_RS00815 - HTH-type transcriptional regulator MetR, at 184,855 to 185,793
_RS00815
HGI48_RS00820: HGI48_RS00820 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 185,898 to 188,165
_RS00820
HGI48_RS00825: HGI48_RS00825 - dienelactone hydrolase family protein, at 188,384 to 189,211
_RS00825
Position (kb) 185
186
187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 184.951 kb on - strand at 184.951 kb on - strand at 184.991 kb on - strand, within HGI48_RS00815 at 185.001 kb on - strand, within HGI48_RS00815 at 185.119 kb on + strand, within HGI48_RS00815 at 185.120 kb on - strand, within HGI48_RS00815 at 185.133 kb on + strand, within HGI48_RS00815 at 185.133 kb on + strand, within HGI48_RS00815 at 185.134 kb on - strand, within HGI48_RS00815 at 185.134 kb on - strand, within HGI48_RS00815 at 185.134 kb on - strand, within HGI48_RS00815 at 185.256 kb on + strand, within HGI48_RS00815 at 185.305 kb on + strand, within HGI48_RS00815 at 185.306 kb on - strand, within HGI48_RS00815 at 185.306 kb on - strand, within HGI48_RS00815 at 185.306 kb on - strand, within HGI48_RS00815 at 185.306 kb on - strand, within HGI48_RS00815 at 185.306 kb on - strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.493 kb on + strand, within HGI48_RS00815 at 185.494 kb on - strand, within HGI48_RS00815 at 185.494 kb on - strand, within HGI48_RS00815 at 185.494 kb on - strand, within HGI48_RS00815 at 185.619 kb on + strand, within HGI48_RS00815 at 185.620 kb on - strand, within HGI48_RS00815 at 185.640 kb on + strand, within HGI48_RS00815 at 185.641 kb on - strand, within HGI48_RS00815 at 185.781 kb on + strand at 185.781 kb on + strand at 185.832 kb on + strand at 185.833 kb on - strand at 185.833 kb on - strand at 185.836 kb on + strand at 185.836 kb on + strand at 185.836 kb on + strand at 185.837 kb on - strand at 185.837 kb on - strand at 185.837 kb on - strand at 185.837 kb on - strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.839 kb on + strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.840 kb on - strand at 185.844 kb on + strand at 185.844 kb on + strand at 185.844 kb on + strand at 185.908 kb on + strand at 185.908 kb on + strand at 185.909 kb on - strand at 185.973 kb on + strand at 185.973 kb on + strand at 185.974 kb on - strand at 185.974 kb on - strand at 185.974 kb on - strand at 185.974 kb on - strand at 185.974 kb on - strand at 186.096 kb on + strand at 186.097 kb on - strand at 186.097 kb on - strand at 186.136 kb on + strand, within HGI48_RS00820 at 186.136 kb on + strand at 186.136 kb on + strand, within HGI48_RS00820 at 186.136 kb on + strand, within HGI48_RS00820 at 186.137 kb on - strand, within HGI48_RS00820 at 186.137 kb on - strand, within HGI48_RS00820 at 186.180 kb on - strand, within HGI48_RS00820 at 186.264 kb on + strand, within HGI48_RS00820 at 186.264 kb on + strand, within HGI48_RS00820 at 186.264 kb on + strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.265 kb on - strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.270 kb on + strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.271 kb on - strand, within HGI48_RS00820 at 186.305 kb on + strand at 186.306 kb on - strand, within HGI48_RS00820 at 186.306 kb on - strand, within HGI48_RS00820 at 186.396 kb on + strand, within HGI48_RS00820 at 186.396 kb on + strand, within HGI48_RS00820 at 186.396 kb on + strand, within HGI48_RS00820 at 186.411 kb on - strand, within HGI48_RS00820 at 186.582 kb on + strand at 186.624 kb on + strand, within HGI48_RS00820 at 186.624 kb on + strand, within HGI48_RS00820 at 186.624 kb on + strand, within HGI48_RS00820 at 186.624 kb on + strand, within HGI48_RS00820 at 186.698 kb on - strand, within HGI48_RS00820 at 186.922 kb on + strand at 186.922 kb on + strand, within HGI48_RS00820 at 186.922 kb on + strand, within HGI48_RS00820 at 186.922 kb on + strand, within HGI48_RS00820 at 186.922 kb on + strand, within HGI48_RS00820 at 186.922 kb on + strand, within HGI48_RS00820 at 186.922 kb on + strand, within HGI48_RS00820 at 186.923 kb on - strand, within HGI48_RS00820 at 186.923 kb on - strand, within HGI48_RS00820 at 186.923 kb on - strand, within HGI48_RS00820 at 186.923 kb on - strand, within HGI48_RS00820 at 187.017 kb on + strand, within HGI48_RS00820 at 187.018 kb on - strand, within HGI48_RS00820 at 187.058 kb on + strand, within HGI48_RS00820 at 187.267 kb on - strand, within HGI48_RS00820 at 187.267 kb on - strand at 187.267 kb on - strand, within HGI48_RS00820 at 187.359 kb on - strand, within HGI48_RS00820 at 187.374 kb on + strand, within HGI48_RS00820 at 187.375 kb on - strand, within HGI48_RS00820 at 187.375 kb on - strand, within HGI48_RS00820 at 187.431 kb on + strand, within HGI48_RS00820 at 187.431 kb on + strand, within HGI48_RS00820 at 187.432 kb on - strand, within HGI48_RS00820 at 187.432 kb on - strand, within HGI48_RS00820 at 187.432 kb on - strand, within HGI48_RS00820 at 187.432 kb on - strand, within HGI48_RS00820 at 187.447 kb on + strand, within HGI48_RS00820 at 187.448 kb on - strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.512 kb on + strand, within HGI48_RS00820 at 187.513 kb on - strand, within HGI48_RS00820 at 187.513 kb on - strand, within HGI48_RS00820 at 187.513 kb on - strand, within HGI48_RS00820 at 187.746 kb on + strand at 187.746 kb on + strand, within HGI48_RS00820 at 187.746 kb on + strand, within HGI48_RS00820 at 187.746 kb on + strand, within HGI48_RS00820 at 187.828 kb on - strand, within HGI48_RS00820 at 187.941 kb on + strand at 187.969 kb on - strand at 187.969 kb on - strand at 187.999 kb on + strand at 188.039 kb on + strand at 188.039 kb on + strand at 188.180 kb on + strand at 188.180 kb on + strand at 188.180 kb on + strand at 188.180 kb on + strand at 188.180 kb on + strand at 188.181 kb on - strand at 188.181 kb on - strand at 188.184 kb on + strand at 188.184 kb on + strand at 188.187 kb on + strand at 188.187 kb on + strand at 188.188 kb on - strand at 188.188 kb on - strand at 188.188 kb on - strand at 188.188 kb on - strand at 188.188 kb on - strand at 188.192 kb on + strand at 188.192 kb on + strand at 188.193 kb on - strand at 188.193 kb on - strand at 188.193 kb on - strand at 188.193 kb on - strand at 188.193 kb on - strand at 188.195 kb on + strand at 188.196 kb on - strand at 188.196 kb on - strand at 188.196 kb on - strand at 188.196 kb on - strand at 188.200 kb on + strand at 188.200 kb on + strand at 188.224 kb on + strand at 188.224 kb on + strand at 188.225 kb on - strand at 188.279 kb on - strand at 188.331 kb on + strand at 188.331 kb on + strand at 188.332 kb on - strand at 188.346 kb on + strand at 188.346 kb on + strand at 188.347 kb on - strand at 188.347 kb on - strand at 188.347 kb on - strand at 188.386 kb on - strand at 188.454 kb on + strand at 188.454 kb on + strand at 188.454 kb on + strand at 188.455 kb on - strand at 188.455 kb on - strand at 188.500 kb on - strand, within HGI48_RS00825 at 188.724 kb on + strand, within HGI48_RS00825 at 188.795 kb on + strand, within HGI48_RS00825 at 188.796 kb on - strand, within HGI48_RS00825 at 188.889 kb on + strand, within HGI48_RS00825 at 188.916 kb on + strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.941 kb on - strand, within HGI48_RS00825 at 188.951 kb on - strand, within HGI48_RS00825 at 188.978 kb on - strand, within HGI48_RS00825 at 188.988 kb on - strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.125 kb on - strand, within HGI48_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 184,951 - -0.5 184,951 - -1.0 184,991 - HGI48_RS00815 0.14 -1.0 185,001 - HGI48_RS00815 0.16 -0.7 185,119 + HGI48_RS00815 0.28 -0.9 185,120 - HGI48_RS00815 0.28 +0.3 185,133 + HGI48_RS00815 0.30 -1.7 185,133 + HGI48_RS00815 0.30 +0.4 185,134 - HGI48_RS00815 0.30 +0.4 185,134 - HGI48_RS00815 0.30 +0.3 185,134 - HGI48_RS00815 0.30 -3.1 185,256 + HGI48_RS00815 0.43 +3.5 185,305 + HGI48_RS00815 0.48 -1.0 185,306 - HGI48_RS00815 0.48 +0.0 185,306 - HGI48_RS00815 0.48 -1.3 185,306 - HGI48_RS00815 0.48 -0.9 185,306 - HGI48_RS00815 0.48 -0.6 185,306 - HGI48_RS00815 0.48 +0.1 185,493 + HGI48_RS00815 0.68 -0.3 185,493 + HGI48_RS00815 0.68 +1.2 185,493 + HGI48_RS00815 0.68 +0.8 185,493 + HGI48_RS00815 0.68 +0.2 185,493 + HGI48_RS00815 0.68 -0.3 185,493 + HGI48_RS00815 0.68 -1.0 185,494 - HGI48_RS00815 0.68 -0.7 185,494 - HGI48_RS00815 0.68 +0.3 185,494 - HGI48_RS00815 0.68 -0.6 185,619 + HGI48_RS00815 0.81 -1.0 185,620 - HGI48_RS00815 0.81 +1.3 185,640 + HGI48_RS00815 0.84 -1.3 185,641 - HGI48_RS00815 0.84 -1.5 185,781 + -0.6 185,781 + +0.0 185,832 + +0.0 185,833 - +0.0 185,833 - -0.6 185,836 + -0.8 185,836 + +0.0 185,836 + +0.0 185,837 - -2.6 185,837 - -0.3 185,837 - -0.6 185,837 - -0.6 185,839 + +1.3 185,839 + -1.8 185,839 + -1.0 185,839 + -1.2 185,839 + +0.0 185,839 + -1.4 185,839 + -0.6 185,839 + -1.7 185,840 - +1.0 185,840 - +0.0 185,840 - -2.0 185,840 - +1.2 185,840 - -1.6 185,840 - +0.3 185,840 - -0.6 185,844 + -2.0 185,844 + +1.4 185,844 + -0.1 185,908 + -0.3 185,908 + -2.3 185,909 - -0.6 185,973 + -1.8 185,973 + -0.9 185,974 - +0.0 185,974 - -1.0 185,974 - -0.6 185,974 - -1.6 185,974 - -0.7 186,096 + +1.0 186,097 - -0.6 186,097 - -0.8 186,136 + HGI48_RS00820 0.10 -1.3 186,136 + +1.4 186,136 + HGI48_RS00820 0.10 -0.1 186,136 + HGI48_RS00820 0.10 -0.7 186,137 - HGI48_RS00820 0.11 -0.4 186,137 - HGI48_RS00820 0.11 +0.0 186,180 - HGI48_RS00820 0.12 +0.5 186,264 + HGI48_RS00820 0.16 -0.3 186,264 + HGI48_RS00820 0.16 -1.3 186,264 + HGI48_RS00820 0.16 -0.1 186,265 - HGI48_RS00820 0.16 -1.6 186,265 - HGI48_RS00820 0.16 -0.3 186,265 - HGI48_RS00820 0.16 -0.2 186,265 - HGI48_RS00820 0.16 +0.0 186,265 - HGI48_RS00820 0.16 +1.5 186,265 - HGI48_RS00820 0.16 +1.6 186,265 - HGI48_RS00820 0.16 -1.4 186,270 + HGI48_RS00820 0.16 -0.1 186,270 + HGI48_RS00820 0.16 -2.2 186,270 + HGI48_RS00820 0.16 -1.8 186,270 + -0.6 186,270 + HGI48_RS00820 0.16 -0.6 186,270 + HGI48_RS00820 0.16 +0.2 186,270 + HGI48_RS00820 0.16 -2.2 186,270 + HGI48_RS00820 0.16 +1.5 186,270 + HGI48_RS00820 0.16 -1.0 186,270 + HGI48_RS00820 0.16 -0.3 186,270 + HGI48_RS00820 0.16 -1.9 186,271 - HGI48_RS00820 0.16 -2.0 186,271 - HGI48_RS00820 0.16 -0.7 186,271 - HGI48_RS00820 0.16 -0.7 186,271 - HGI48_RS00820 0.16 -1.4 186,271 - HGI48_RS00820 0.16 +0.6 186,271 - HGI48_RS00820 0.16 -0.3 186,271 - HGI48_RS00820 0.16 -1.3 186,271 - HGI48_RS00820 0.16 -0.8 186,271 - HGI48_RS00820 0.16 -2.0 186,271 - HGI48_RS00820 0.16 -0.4 186,271 - HGI48_RS00820 0.16 +0.2 186,271 - HGI48_RS00820 0.16 +0.2 186,305 + +1.0 186,306 - HGI48_RS00820 0.18 +0.1 186,306 - HGI48_RS00820 0.18 -0.4 186,396 + HGI48_RS00820 0.22 -0.4 186,396 + HGI48_RS00820 0.22 -0.4 186,396 + HGI48_RS00820 0.22 -0.1 186,411 - HGI48_RS00820 0.23 -2.3 186,582 + +1.7 186,624 + HGI48_RS00820 0.32 +0.4 186,624 + HGI48_RS00820 0.32 -1.9 186,624 + HGI48_RS00820 0.32 +0.0 186,624 + HGI48_RS00820 0.32 -2.4 186,698 - HGI48_RS00820 0.35 +0.4 186,922 + -0.6 186,922 + HGI48_RS00820 0.45 +0.2 186,922 + HGI48_RS00820 0.45 -1.6 186,922 + HGI48_RS00820 0.45 -1.3 186,922 + HGI48_RS00820 0.45 -1.2 186,922 + HGI48_RS00820 0.45 +1.3 186,922 + HGI48_RS00820 0.45 -0.3 186,923 - HGI48_RS00820 0.45 +1.0 186,923 - HGI48_RS00820 0.45 +0.2 186,923 - HGI48_RS00820 0.45 -1.8 186,923 - HGI48_RS00820 0.45 -0.4 187,017 + HGI48_RS00820 0.49 -0.3 187,018 - HGI48_RS00820 0.49 +0.0 187,058 + HGI48_RS00820 0.51 -1.4 187,267 - HGI48_RS00820 0.60 -1.3 187,267 - +1.0 187,267 - HGI48_RS00820 0.60 +0.3 187,359 - HGI48_RS00820 0.64 -1.3 187,374 + HGI48_RS00820 0.65 -0.2 187,375 - HGI48_RS00820 0.65 +0.5 187,375 - HGI48_RS00820 0.65 -0.8 187,431 + HGI48_RS00820 0.68 -0.2 187,431 + HGI48_RS00820 0.68 +1.0 187,432 - HGI48_RS00820 0.68 -1.6 187,432 - HGI48_RS00820 0.68 -0.4 187,432 - HGI48_RS00820 0.68 +0.2 187,432 - HGI48_RS00820 0.68 +0.6 187,447 + HGI48_RS00820 0.68 +0.1 187,448 - HGI48_RS00820 0.68 +1.2 187,512 + HGI48_RS00820 0.71 -1.3 187,512 + HGI48_RS00820 0.71 -1.8 187,512 + +2.3 187,512 + HGI48_RS00820 0.71 +0.7 187,512 + HGI48_RS00820 0.71 -1.0 187,512 + HGI48_RS00820 0.71 +0.0 187,512 + HGI48_RS00820 0.71 -2.2 187,512 + HGI48_RS00820 0.71 -0.3 187,512 + HGI48_RS00820 0.71 +1.0 187,513 - HGI48_RS00820 0.71 +0.7 187,513 - HGI48_RS00820 0.71 +0.2 187,513 - HGI48_RS00820 0.71 -0.7 187,746 + +1.7 187,746 + HGI48_RS00820 0.81 -0.6 187,746 + HGI48_RS00820 0.81 +0.8 187,746 + HGI48_RS00820 0.81 -0.2 187,828 - HGI48_RS00820 0.85 +0.7 187,941 + -0.6 187,969 - -1.3 187,969 - +0.1 187,999 + -1.0 188,039 + -0.9 188,039 + -0.8 188,180 + -1.0 188,180 + +0.2 188,180 + +0.6 188,180 + +1.5 188,180 + +1.7 188,181 - -0.0 188,181 - -0.2 188,184 + -0.8 188,184 + +1.5 188,187 + +0.5 188,187 + +0.6 188,188 - +1.0 188,188 - -0.6 188,188 - +0.3 188,188 - -0.1 188,188 - +0.3 188,192 + +0.2 188,192 + -1.3 188,193 - +0.6 188,193 - +1.0 188,193 - -0.2 188,193 - -2.4 188,193 - -0.2 188,195 + +1.0 188,196 - +0.9 188,196 - -0.7 188,196 - -0.8 188,196 - -1.8 188,200 + +0.7 188,200 + -1.0 188,224 + -0.0 188,224 + -1.3 188,225 - +1.0 188,279 - -0.1 188,331 + -0.6 188,331 + -0.3 188,332 - +2.9 188,346 + +1.0 188,346 + +0.3 188,347 - +1.0 188,347 - -0.2 188,347 - -0.2 188,386 - +2.7 188,454 + -1.0 188,454 + +0.8 188,454 + +1.0 188,455 - -1.3 188,455 - -1.2 188,500 - HGI48_RS00825 0.14 -1.0 188,724 + HGI48_RS00825 0.41 +0.1 188,795 + HGI48_RS00825 0.50 +1.0 188,796 - HGI48_RS00825 0.50 -0.7 188,889 + HGI48_RS00825 0.61 +0.3 188,916 + HGI48_RS00825 0.64 +0.3 188,917 - HGI48_RS00825 0.64 -1.0 188,917 - HGI48_RS00825 0.64 +0.4 188,917 - HGI48_RS00825 0.64 -0.4 188,941 - HGI48_RS00825 0.67 -0.6 188,951 - HGI48_RS00825 0.68 -0.3 188,978 - HGI48_RS00825 0.72 -0.2 188,988 - HGI48_RS00825 0.73 +1.0 189,057 + HGI48_RS00825 0.81 -1.0 189,057 + HGI48_RS00825 0.81 -0.0 189,057 + HGI48_RS00825 0.81 +0.4 189,057 + HGI48_RS00825 0.81 -2.2 189,057 + HGI48_RS00825 0.81 -0.1 189,057 + HGI48_RS00825 0.81 +0.2 189,058 - HGI48_RS00825 0.81 -0.6 189,058 - HGI48_RS00825 0.81 +1.9 189,058 - HGI48_RS00825 0.81 +0.4 189,058 - HGI48_RS00825 0.81 +0.0 189,058 - HGI48_RS00825 0.81 -0.3 189,058 - HGI48_RS00825 0.81 -0.4 189,058 - HGI48_RS00825 0.81 +0.0 189,125 - HGI48_RS00825 0.89 -1.8
Or see this region's nucleotide sequence