Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00620

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotidesHGI48_RS00620 and HGI48_RS00625 are separated by 53 nucleotidesHGI48_RS00625 and HGI48_RS00630 are separated by 32 nucleotides HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376 _RS00615 HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326 _RS00620 HGI48_RS00625: HGI48_RS00625 - M55 family metallopeptidase, at 148,380 to 149,201 _RS00625 HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289 _RS00630 Position (kb) 147 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 146.358 kb on + strand, within HGI48_RS00615at 146.358 kb on + strandat 146.359 kb on - strandat 146.359 kb on - strand, within HGI48_RS00615at 146.359 kb on - strand, within HGI48_RS00615at 146.398 kb on + strand, within HGI48_RS00615at 146.398 kb on + strand, within HGI48_RS00615at 146.399 kb on - strand, within HGI48_RS00615at 146.455 kb on + strand, within HGI48_RS00615at 146.455 kb on + strand, within HGI48_RS00615at 146.455 kb on + strand, within HGI48_RS00615at 146.456 kb on - strandat 146.456 kb on - strand, within HGI48_RS00615at 146.456 kb on - strand, within HGI48_RS00615at 146.456 kb on - strand, within HGI48_RS00615at 146.460 kb on + strand, within HGI48_RS00615at 146.498 kb on - strandat 146.498 kb on - strand, within HGI48_RS00615at 146.508 kb on + strand, within HGI48_RS00615at 146.509 kb on - strand, within HGI48_RS00615at 146.571 kb on + strand, within HGI48_RS00615at 146.571 kb on + strand, within HGI48_RS00615at 146.572 kb on - strand, within HGI48_RS00615at 146.572 kb on - strand, within HGI48_RS00615at 146.572 kb on - strand, within HGI48_RS00615at 146.628 kb on + strand, within HGI48_RS00615at 146.628 kb on + strand, within HGI48_RS00615at 146.628 kb on + strand, within HGI48_RS00615at 146.628 kb on + strand, within HGI48_RS00615at 146.692 kb on + strand, within HGI48_RS00615at 146.693 kb on - strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strandat 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strandat 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.783 kb on + strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.784 kb on - strand, within HGI48_RS00615at 146.822 kb on - strand, within HGI48_RS00615at 146.893 kb on + strand, within HGI48_RS00615at 146.893 kb on + strand, within HGI48_RS00615at 146.894 kb on - strand, within HGI48_RS00615at 146.980 kb on + strand, within HGI48_RS00615at 146.980 kb on + strand, within HGI48_RS00615at 146.981 kb on - strandat 146.981 kb on - strand, within HGI48_RS00615at 147.043 kb on + strand, within HGI48_RS00615at 147.043 kb on + strand, within HGI48_RS00615at 147.044 kb on - strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strandat 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.092 kb on + strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.093 kb on - strand, within HGI48_RS00615at 147.248 kb on + strand, within HGI48_RS00615at 147.248 kb on + strand, within HGI48_RS00615at 147.248 kb on + strand, within HGI48_RS00615at 147.248 kb on + strand, within HGI48_RS00615at 147.249 kb on - strandat 147.249 kb on - strand, within HGI48_RS00615at 147.249 kb on - strand, within HGI48_RS00615at 147.249 kb on - strand, within HGI48_RS00615at 147.249 kb on - strand, within HGI48_RS00615at 147.353 kb on + strandat 147.354 kb on - strandat 147.354 kb on - strandat 147.363 kb on + strandat 147.364 kb on - strandat 147.404 kb on + strandat 147.405 kb on - strandat 147.405 kb on - strandat 147.419 kb on + strandat 147.419 kb on + strandat 147.419 kb on + strandat 147.419 kb on + strandat 147.420 kb on - strandat 147.420 kb on - strandat 147.451 kb on - strandat 147.579 kb on - strand, within HGI48_RS00620at 147.592 kb on - strand, within HGI48_RS00620at 147.592 kb on - strand, within HGI48_RS00620at 147.651 kb on - strand, within HGI48_RS00620at 148.074 kb on + strandat 148.122 kb on + strand, within HGI48_RS00620at 148.360 kb on + strandat 148.381 kb on + strandat 148.381 kb on + strandat 148.382 kb on - strandat 148.382 kb on - strandat 148.382 kb on - strandat 148.403 kb on - strandat 148.454 kb on - strandat 148.547 kb on - strand, within HGI48_RS00625at 148.547 kb on - strand, within HGI48_RS00625at 148.577 kb on + strand, within HGI48_RS00625at 148.578 kb on - strand, within HGI48_RS00625at 148.687 kb on + strand, within HGI48_RS00625at 148.687 kb on + strand, within HGI48_RS00625at 148.687 kb on + strand, within HGI48_RS00625at 148.687 kb on + strand, within HGI48_RS00625at 148.687 kb on + strand, within HGI48_RS00625at 148.688 kb on - strand, within HGI48_RS00625at 148.688 kb on - strand, within HGI48_RS00625at 148.688 kb on - strandat 148.705 kb on + strand, within HGI48_RS00625at 148.706 kb on - strand, within HGI48_RS00625at 148.743 kb on + strand, within HGI48_RS00625at 148.787 kb on - strand, within HGI48_RS00625at 148.790 kb on + strand, within HGI48_RS00625at 148.790 kb on + strand, within HGI48_RS00625at 148.790 kb on + strand, within HGI48_RS00625at 148.791 kb on - strand, within HGI48_RS00625at 148.791 kb on - strand, within HGI48_RS00625at 149.113 kb on - strand, within HGI48_RS00625at 149.120 kb on - strandat 149.120 kb on - strandat 149.190 kb on - strandat 149.193 kb on + strandat 149.194 kb on - strandat 149.194 kb on - strandat 149.194 kb on - strandat 149.194 kb on - strandat 149.194 kb on - strandat 149.194 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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146,358 + HGI48_RS00615 0.19 +0.8
146,358 + +2.4
146,359 - +1.8
146,359 - HGI48_RS00615 0.19 -2.4
146,359 - HGI48_RS00615 0.19 -1.1
146,398 + HGI48_RS00615 0.22 -0.7
146,398 + HGI48_RS00615 0.22 +0.0
146,399 - HGI48_RS00615 0.23 -0.3
146,455 + HGI48_RS00615 0.27 -0.7
146,455 + HGI48_RS00615 0.27 -0.8
146,455 + HGI48_RS00615 0.27 -2.3
146,456 - +1.0
146,456 - HGI48_RS00615 0.27 -0.3
146,456 - HGI48_RS00615 0.27 +1.0
146,456 - HGI48_RS00615 0.27 -0.6
146,460 + HGI48_RS00615 0.27 -1.3
146,498 - +1.0
146,498 - HGI48_RS00615 0.30 +0.6
146,508 + HGI48_RS00615 0.31 +0.0
146,509 - HGI48_RS00615 0.31 +2.0
146,571 + HGI48_RS00615 0.36 -1.8
146,571 + HGI48_RS00615 0.36 +0.0
146,572 - HGI48_RS00615 0.36 -2.3
146,572 - HGI48_RS00615 0.36 -1.0
146,572 - HGI48_RS00615 0.36 -2.3
146,628 + HGI48_RS00615 0.41 -0.6
146,628 + HGI48_RS00615 0.41 +0.8
146,628 + HGI48_RS00615 0.41 -0.6
146,628 + HGI48_RS00615 0.41 -0.6
146,692 + HGI48_RS00615 0.46 +1.3
146,693 - HGI48_RS00615 0.46 -1.7
146,783 + HGI48_RS00615 0.53 -0.4
146,783 + HGI48_RS00615 0.53 +0.0
146,783 + -0.6
146,783 + HGI48_RS00615 0.53 +0.4
146,783 + HGI48_RS00615 0.53 -0.3
146,783 + HGI48_RS00615 0.53 +0.7
146,783 + HGI48_RS00615 0.53 -2.4
146,783 + -0.6
146,783 + HGI48_RS00615 0.53 -1.6
146,783 + HGI48_RS00615 0.53 -3.1
146,783 + HGI48_RS00615 0.53 -0.3
146,783 + HGI48_RS00615 0.53 -1.3
146,784 - HGI48_RS00615 0.53 -1.3
146,784 - HGI48_RS00615 0.53 -1.6
146,784 - HGI48_RS00615 0.53 -0.8
146,784 - HGI48_RS00615 0.53 +0.4
146,784 - HGI48_RS00615 0.53 -2.1
146,784 - HGI48_RS00615 0.53 +1.0
146,784 - HGI48_RS00615 0.53 +0.0
146,784 - HGI48_RS00615 0.53 -1.4
146,784 - HGI48_RS00615 0.53 +1.2
146,784 - HGI48_RS00615 0.53 -2.1
146,822 - HGI48_RS00615 0.56 +0.3
146,893 + HGI48_RS00615 0.62 +0.3
146,893 + HGI48_RS00615 0.62 +2.2
146,894 - HGI48_RS00615 0.62 -0.6
146,980 + HGI48_RS00615 0.69 -1.0
146,980 + HGI48_RS00615 0.69 +0.0
146,981 - +0.0
146,981 - HGI48_RS00615 0.69 -1.8
147,043 + HGI48_RS00615 0.74 -0.8
147,043 + HGI48_RS00615 0.74 -2.1
147,044 - HGI48_RS00615 0.74 -0.2
147,092 + HGI48_RS00615 0.77 -0.2
147,092 + +1.8
147,092 + HGI48_RS00615 0.77 -0.5
147,092 + HGI48_RS00615 0.77 +0.0
147,092 + HGI48_RS00615 0.77 -0.4
147,092 + HGI48_RS00615 0.77 -0.0
147,092 + HGI48_RS00615 0.77 +0.6
147,092 + HGI48_RS00615 0.77 +1.3
147,092 + HGI48_RS00615 0.77 +1.3
147,092 + HGI48_RS00615 0.77 -1.3
147,092 + HGI48_RS00615 0.77 +0.5
147,093 - HGI48_RS00615 0.78 +0.2
147,093 - HGI48_RS00615 0.78 -0.4
147,093 - HGI48_RS00615 0.78 +0.0
147,093 - HGI48_RS00615 0.78 -0.2
147,093 - HGI48_RS00615 0.78 -0.4
147,093 - HGI48_RS00615 0.78 +1.3
147,093 - HGI48_RS00615 0.78 -2.3
147,248 + HGI48_RS00615 0.90 -0.6
147,248 + HGI48_RS00615 0.90 -2.3
147,248 + HGI48_RS00615 0.90 +1.5
147,248 + HGI48_RS00615 0.90 -1.1
147,249 - +2.0
147,249 - HGI48_RS00615 0.90 -0.4
147,249 - HGI48_RS00615 0.90 -0.0
147,249 - HGI48_RS00615 0.90 -1.6
147,249 - HGI48_RS00615 0.90 -1.8
147,353 + +0.0
147,354 - -1.6
147,354 - +0.6
147,363 + -1.3
147,364 - -0.3
147,404 + +1.7
147,405 - +1.9
147,405 - +1.0
147,419 + -0.4
147,419 + +1.0
147,419 + +0.7
147,419 + -0.5
147,420 - +0.7
147,420 - +0.4
147,451 - +0.7
147,579 - HGI48_RS00620 0.23 -1.1
147,592 - HGI48_RS00620 0.24 +0.8
147,592 - HGI48_RS00620 0.24 +0.7
147,651 - HGI48_RS00620 0.30 +0.3
148,074 + +1.6
148,122 + HGI48_RS00620 0.79 -0.2
148,360 + -1.0
148,381 + -1.3
148,381 + -1.0
148,382 - -0.4
148,382 - -1.0
148,382 - +1.6
148,403 - -1.3
148,454 - -0.6
148,547 - HGI48_RS00625 0.20 -2.6
148,547 - HGI48_RS00625 0.20 -1.3
148,577 + HGI48_RS00625 0.24 -1.0
148,578 - HGI48_RS00625 0.24 +0.0
148,687 + HGI48_RS00625 0.37 -1.8
148,687 + HGI48_RS00625 0.37 +0.8
148,687 + HGI48_RS00625 0.37 +0.1
148,687 + HGI48_RS00625 0.37 -1.4
148,687 + HGI48_RS00625 0.37 -0.6
148,688 - HGI48_RS00625 0.37 +0.5
148,688 - HGI48_RS00625 0.37 -1.1
148,688 - -0.6
148,705 + HGI48_RS00625 0.40 -0.4
148,706 - HGI48_RS00625 0.40 -0.1
148,743 + HGI48_RS00625 0.44 -1.6
148,787 - HGI48_RS00625 0.50 -2.3
148,790 + HGI48_RS00625 0.50 -0.5
148,790 + HGI48_RS00625 0.50 +0.8
148,790 + HGI48_RS00625 0.50 +0.0
148,791 - HGI48_RS00625 0.50 -1.8
148,791 - HGI48_RS00625 0.50 -0.3
149,113 - HGI48_RS00625 0.89 +0.3
149,120 - -0.6
149,120 - -0.8
149,190 - +0.6
149,193 + -0.8
149,194 - +1.3
149,194 - +0.4
149,194 - -1.0
149,194 - +1.6
149,194 - -1.7
149,194 - -0.1

Or see this region's nucleotide sequence