Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00455

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
112,763	+				-2.0
112,763	+				-1.6
112,764	-				+0.3
112,764	-				+0.8
112,764	-				+1.9
112,767	-				-0.6
112,827	+				-1.6
112,828	-				+0.6
112,828	-				-1.8
112,828	-				-1.0
112,828	-				+0.4
112,828	-				-0.6
112,863	-				-1.0
112,881	-				-0.1
112,940	+				-0.6
112,940	+				-0.9
112,958	+				+1.0
113,104	+		HGI48_RS00450	0.28	+0.0
113,104	+		HGI48_RS00450	0.28	+1.0
113,104	+		HGI48_RS00450	0.28	-0.6
113,105	-		HGI48_RS00450	0.28	+0.6
113,105	-		HGI48_RS00450	0.28	+0.0
113,105	-				+1.0
113,105	-		HGI48_RS00450	0.28	-0.3
113,105	-		HGI48_RS00450	0.28	+0.1
113,411	+		HGI48_RS00450	0.67	+0.0
113,411	+		HGI48_RS00450	0.67	+0.3
113,411	+		HGI48_RS00450	0.67	-0.7
113,412	-		HGI48_RS00450	0.67	+0.7
113,412	-		HGI48_RS00450	0.67	+0.0
113,412	-		HGI48_RS00450	0.67	+0.3
113,412	-		HGI48_RS00450	0.67	-1.6
113,412	-		HGI48_RS00450	0.67	+1.0
113,412	-		HGI48_RS00450	0.67	-0.1
113,412	-		HGI48_RS00450	0.67	+0.2
113,412	-		HGI48_RS00450	0.67	+0.0
113,412	-				+0.0
113,502	-		HGI48_RS00450	0.78	-1.3
113,627	+				+0.0
113,627	+				-0.3
113,627	+				-1.1
113,628	-				+0.0
113,628	-				-0.6
113,639	+				+0.4
113,639	+				-2.3
113,639	+				-0.1
113,642	+				-0.3
113,642	+				+0.1
113,642	+				+1.8
113,643	-				-0.4
113,643	-				-0.8
113,708	-				+0.3
113,726	+				+0.4
113,726	+				-0.6
113,726	+				-2.0
113,726	+				-0.1
113,726	+				+0.2
113,727	-				-0.4
113,727	-				+0.6
113,757	+				-1.6
113,758	-				-0.6
113,805	+				-1.6
113,805	+				-1.3
113,917	+		HGI48_RS00455	0.17	+2.0
113,917	+		HGI48_RS00455	0.17	-2.0
113,917	+		HGI48_RS00455	0.17	-1.8
113,918	-		HGI48_RS00455	0.17	+1.0
113,918	-		HGI48_RS00455	0.17	-1.6
113,918	-		HGI48_RS00455	0.17	-1.0
113,918	-		HGI48_RS00455	0.17	-0.8
113,918	-		HGI48_RS00455	0.17	-0.0
113,950	-				-0.6
114,012	+		HGI48_RS00455	0.25	+0.0
114,012	+		HGI48_RS00455	0.25	+0.7
114,012	+		HGI48_RS00455	0.25	-1.6
114,012	+		HGI48_RS00455	0.25	-1.0
114,013	-		HGI48_RS00455	0.25	-0.9
114,013	-		HGI48_RS00455	0.25	-0.6
114,013	-		HGI48_RS00455	0.25	-0.3
114,013	-		HGI48_RS00455	0.25	+0.4
114,013	-		HGI48_RS00455	0.25	-1.1
114,013	-		HGI48_RS00455	0.25	-0.7
114,013	-		HGI48_RS00455	0.25	+0.0
114,013	-				+1.0
114,013	-		HGI48_RS00455	0.25	-1.1
114,013	-		HGI48_RS00455	0.25	-1.0
114,201	+		HGI48_RS00455	0.42	-0.8
114,301	+		HGI48_RS00455	0.50	+0.3
114,301	+				+1.0
114,301	+		HGI48_RS00455	0.50	-0.0
114,301	+		HGI48_RS00455	0.50	-2.3
114,301	+		HGI48_RS00455	0.50	-0.7
114,301	+				+1.4
114,302	-				+0.0
114,302	-		HGI48_RS00455	0.51	-1.0
114,302	-		HGI48_RS00455	0.51	-1.6
114,302	-		HGI48_RS00455	0.51	-1.6
114,426	+		HGI48_RS00455	0.61	+0.2
114,643	-				+0.0
114,643	-		HGI48_RS00455	0.80	+1.3
114,643	-		HGI48_RS00455	0.80	-0.7
114,643	-		HGI48_RS00455	0.80	-0.1
114,643	-		HGI48_RS00455	0.80	-1.1
114,667	+		HGI48_RS00455	0.82	-0.3
114,668	-		HGI48_RS00455	0.82	+0.0
114,669	+		HGI48_RS00455	0.82	-1.9
114,669	+		HGI48_RS00455	0.82	+1.3
114,670	-		HGI48_RS00455	0.82	-0.6
114,684	+		HGI48_RS00455	0.84	-1.0
114,685	-		HGI48_RS00455	0.84	-0.1
114,730	-		HGI48_RS00455	0.88	+1.6
114,730	-		HGI48_RS00455	0.88	-1.3
114,739	+		HGI48_RS00455	0.88	-0.7
114,739	+		HGI48_RS00455	0.88	-0.1
114,739	+		HGI48_RS00455	0.88	-0.2
114,739	+		HGI48_RS00455	0.88	-1.4
114,739	+		HGI48_RS00455	0.88	-1.3
114,739	+		HGI48_RS00455	0.88	+0.6
114,739	+		HGI48_RS00455	0.88	+0.3
114,739	+		HGI48_RS00455	0.88	-1.0
114,740	-		HGI48_RS00455	0.89	+1.0
114,740	-		HGI48_RS00455	0.89	+0.1
114,740	-		HGI48_RS00455	0.89	-0.6
114,740	-		HGI48_RS00455	0.89	+0.3
114,740	-		HGI48_RS00455	0.89	-0.8
114,740	-		HGI48_RS00455	0.89	+0.5
114,741	+		HGI48_RS00455	0.89	+0.0
114,741	+		HGI48_RS00455	0.89	-2.1
114,742	-		HGI48_RS00455	0.89	-0.4
114,742	-		HGI48_RS00455	0.89	-0.8
114,742	-		HGI48_RS00455	0.89	+0.3
114,742	-		HGI48_RS00455	0.89	+1.0
114,742	-		HGI48_RS00455	0.89	-1.3
114,742	-		HGI48_RS00455	0.89	-0.4
114,779	-				-0.6
114,845	+				-0.6
114,845	+				+0.4
114,846	-				-0.2
114,846	-				-0.6
114,846	-				+1.6
114,860	-				+0.0
114,860	-				-1.0
114,884	+				+0.6
114,917	-				-1.6
114,920	+				-0.4
114,920	+				+0.9
114,920	+				+1.0
114,921	-				+0.3
114,921	-				+1.0
114,921	-				-1.5
114,921	-				+0.2
114,921	-				+0.1
114,921	-				+0.2
114,921	-				-0.6
114,921	-				+0.0
114,921	-				+0.7
114,924	+				+0.0
114,924	+				+0.3
114,925	-				-0.4
114,938	+				-2.0
114,938	+				+0.0
114,938	+				-1.2
114,939	-				+1.3
114,949	+				-1.6
114,974	-				+0.4
114,987	+				+0.3
114,997	+				+2.4
114,998	-				+0.7
114,998	-				+0.7
114,998	-				+2.9
114,998	-				+1.4
114,998	-				-0.3
115,112	-		HGI48_RS00460	0.15	+1.3
115,196	+		HGI48_RS00460	0.24	-1.3
115,197	-		HGI48_RS00460	0.24	-1.8
115,217	+				+1.4
115,218	-		HGI48_RS00460	0.27	+0.2
115,218	-		HGI48_RS00460	0.27	+0.0
115,218	-		HGI48_RS00460	0.27	-0.1
115,218	-		HGI48_RS00460	0.27	-0.0
115,218	-		HGI48_RS00460	0.27	+0.2
115,282	+		HGI48_RS00460	0.34	-0.4
115,282	+				+1.0
115,282	+		HGI48_RS00460	0.34	+0.0
115,282	+		HGI48_RS00460	0.34	-2.2
115,282	+		HGI48_RS00460	0.34	+0.6
115,282	+		HGI48_RS00460	0.34	+0.3
115,282	+		HGI48_RS00460	0.34	+0.7
115,282	+		HGI48_RS00460	0.34	-1.1
115,283	-		HGI48_RS00460	0.34	-0.1
115,283	-		HGI48_RS00460	0.34	+1.5
115,283	-		HGI48_RS00460	0.34	-0.6
115,283	-		HGI48_RS00460	0.34	+2.1
115,283	-		HGI48_RS00460	0.34	-0.6
115,283	-				-0.6
115,283	-		HGI48_RS00460	0.34	-1.0
115,283	-		HGI48_RS00460	0.34	-0.4
115,283	-		HGI48_RS00460	0.34	-2.3
115,283	-		HGI48_RS00460	0.34	+0.8
115,283	-		HGI48_RS00460	0.34	+1.1
115,283	-		HGI48_RS00460	0.34	-0.9
115,283	-		HGI48_RS00460	0.34	-0.1
115,283	-		HGI48_RS00460	0.34	+0.7
115,358	-		HGI48_RS00460	0.42	-1.4
115,358	-		HGI48_RS00460	0.42	-1.6
115,482	+		HGI48_RS00460	0.55	-0.7
115,483	-		HGI48_RS00460	0.55	+1.5
115,483	-		HGI48_RS00460	0.55	-1.9
115,560	-		HGI48_RS00460	0.64	+0.0
115,647	+		HGI48_RS00460	0.73	+0.8
115,648	-		HGI48_RS00460	0.73	+0.0
115,648	-		HGI48_RS00460	0.73	+0.2
115,648	-		HGI48_RS00460	0.73	-1.3
115,770	+		HGI48_RS00460	0.86	-1.0
115,771	-		HGI48_RS00460	0.86	-2.0
115,797	+		HGI48_RS00460	0.89	+0.7
115,797	+		HGI48_RS00460	0.89	-0.7
115,797	+		HGI48_RS00460	0.89	-1.6
115,797	+		HGI48_RS00460	0.89	-1.7
115,797	+		HGI48_RS00460	0.89	-1.3
115,797	+		HGI48_RS00460	0.89	-1.3
115,797	+		HGI48_RS00460	0.89	-0.7
115,797	+				+3.6
115,797	+				+1.0
115,797	+		HGI48_RS00460	0.89	+0.3
115,797	+		HGI48_RS00460	0.89	+0.0
115,798	-				-0.6
115,798	-		HGI48_RS00460	0.89	-0.5
115,798	-		HGI48_RS00460	0.89	+0.0
115,798	-		HGI48_RS00460	0.89	+0.5
115,798	-		HGI48_RS00460	0.89	-1.3
115,798	-		HGI48_RS00460	0.89	+0.2
115,798	-		HGI48_RS00460	0.89	+0.1
115,798	-		HGI48_RS00460	0.89	+0.4
115,798	-				+2.6
115,798	-		HGI48_RS00460	0.89	-1.1
115,798	-		HGI48_RS00460	0.89	-0.8
115,798	-		HGI48_RS00460	0.89	+0.0
115,798	-		HGI48_RS00460	0.89	-2.0
115,798	-		HGI48_RS00460	0.89	+0.1
115,798	-		HGI48_RS00460	0.89	-0.7
115,798	-		HGI48_RS00460	0.89	+1.1
115,798	-		HGI48_RS00460	0.89	-0.9
115,799	+		HGI48_RS00460	0.90	+1.0
115,799	+		HGI48_RS00460	0.90	-1.3
115,799	+		HGI48_RS00460	0.90	-0.6
115,800	-		HGI48_RS00460	0.90	-1.6
115,800	-		HGI48_RS00460	0.90	+0.7
115,800	-		HGI48_RS00460	0.90	-1.6
115,848	+				-1.3
115,849	-				+1.9
115,849	-				+0.3