Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00430 and HGI48_RS00435 overlap by 44 nucleotides HGI48_RS00435 and HGI48_RS00440 overlap by 13 nucleotides HGI48_RS00440 and HGI48_RS00445 are separated by 281 nucleotides
HGI48_RS00430: HGI48_RS00430 - two-component system sensor histidine kinase VfmI, at 108,922 to 110,241
_RS00430
HGI48_RS00435: HGI48_RS00435 - 4'-phosphopantetheinyl transferase superfamily protein, at 110,198 to 110,968
_RS00435
HGI48_RS00440: HGI48_RS00440 - DUF2807 domain-containing protein, at 110,956 to 111,603
_RS00440
HGI48_RS00445: HGI48_RS00445 - 3-oxoacyl-ACP synthase, at 111,885 to 112,823
_RS00445
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.101 kb on + strand, within HGI48_RS00430 at 110.102 kb on - strand, within HGI48_RS00430 at 110.102 kb on - strand, within HGI48_RS00430 at 110.103 kb on + strand, within HGI48_RS00430 at 110.103 kb on + strand, within HGI48_RS00430 at 110.104 kb on - strand, within HGI48_RS00430 at 110.104 kb on - strand, within HGI48_RS00430 at 110.194 kb on - strand at 110.220 kb on + strand at 110.221 kb on - strand at 110.221 kb on - strand at 110.395 kb on + strand, within HGI48_RS00435 at 110.509 kb on + strand, within HGI48_RS00435 at 110.644 kb on - strand at 110.644 kb on - strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand, within HGI48_RS00435 at 110.708 kb on + strand at 110.708 kb on + strand at 110.708 kb on + strand at 110.708 kb on + strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.709 kb on - strand, within HGI48_RS00435 at 110.710 kb on + strand, within HGI48_RS00435 at 110.710 kb on + strand, within HGI48_RS00435 at 110.710 kb on + strand, within HGI48_RS00435 at 110.867 kb on + strand, within HGI48_RS00435 at 110.867 kb on + strand, within HGI48_RS00435 at 110.868 kb on - strand, within HGI48_RS00435 at 110.970 kb on + strand at 110.970 kb on + strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.975 kb on - strand at 110.975 kb on - strand at 110.975 kb on - strand at 110.975 kb on - strand at 111.001 kb on - strand at 111.001 kb on - strand at 111.076 kb on + strand at 111.077 kb on - strand, within HGI48_RS00440 at 111.077 kb on - strand, within HGI48_RS00440 at 111.088 kb on + strand, within HGI48_RS00440 at 111.088 kb on + strand, within HGI48_RS00440 at 111.301 kb on - strand at 111.301 kb on - strand, within HGI48_RS00440 at 111.304 kb on - strand, within HGI48_RS00440 at 111.318 kb on + strand, within HGI48_RS00440 at 111.319 kb on - strand at 111.319 kb on - strand, within HGI48_RS00440 at 111.511 kb on - strand, within HGI48_RS00440 at 111.654 kb on + strand at 111.654 kb on + strand at 111.655 kb on - strand at 111.743 kb on + strand at 111.743 kb on + strand at 111.743 kb on + strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.795 kb on + strand at 111.795 kb on + strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.804 kb on + strand at 111.805 kb on - strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.848 kb on + strand at 111.849 kb on - strand at 111.862 kb on + strand at 111.862 kb on + strand at 111.862 kb on + strand at 111.863 kb on - strand at 112.021 kb on + strand, within HGI48_RS00445 at 112.021 kb on + strand, within HGI48_RS00445 at 112.022 kb on - strand, within HGI48_RS00445 at 112.104 kb on + strand, within HGI48_RS00445 at 112.126 kb on - strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.161 kb on - strand, within HGI48_RS00445 at 112.167 kb on + strand, within HGI48_RS00445 at 112.168 kb on - strand at 112.201 kb on + strand, within HGI48_RS00445 at 112.201 kb on + strand, within HGI48_RS00445 at 112.201 kb on + strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.266 kb on - strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.268 kb on - strand, within HGI48_RS00445 at 112.268 kb on - strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.340 kb on + strand, within HGI48_RS00445 at 112.340 kb on + strand, within HGI48_RS00445 at 112.354 kb on + strand, within HGI48_RS00445 at 112.355 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.592 kb on + strand, within HGI48_RS00445 at 112.592 kb on + strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 110,101 + HGI48_RS00430 0.89 -0.4 110,101 + HGI48_RS00430 0.89 +1.8 110,101 + HGI48_RS00430 0.89 -1.6 110,101 + HGI48_RS00430 0.89 +1.8 110,101 + HGI48_RS00430 0.89 -0.6 110,101 + HGI48_RS00430 0.89 +1.7 110,101 + HGI48_RS00430 0.89 +0.8 110,102 - HGI48_RS00430 0.89 +0.0 110,102 - HGI48_RS00430 0.89 +0.0 110,103 + HGI48_RS00430 0.89 -0.3 110,103 + HGI48_RS00430 0.89 -1.8 110,104 - HGI48_RS00430 0.90 -1.3 110,104 - HGI48_RS00430 0.90 -0.6 110,194 - +1.4 110,220 + +0.3 110,221 - +1.2 110,221 - -0.4 110,395 + HGI48_RS00435 0.26 +0.8 110,509 + HGI48_RS00435 0.40 -0.5 110,644 - +2.8 110,644 - HGI48_RS00435 0.58 -2.0 110,708 + HGI48_RS00435 0.66 -1.6 110,708 + HGI48_RS00435 0.66 -0.9 110,708 + HGI48_RS00435 0.66 +0.4 110,708 + HGI48_RS00435 0.66 +0.4 110,708 + HGI48_RS00435 0.66 -0.5 110,708 + HGI48_RS00435 0.66 +0.0 110,708 + HGI48_RS00435 0.66 +0.6 110,708 + HGI48_RS00435 0.66 -0.6 110,708 + +1.0 110,708 + -0.6 110,708 + -0.6 110,708 + HGI48_RS00435 0.66 -2.0 110,709 - HGI48_RS00435 0.66 -0.2 110,709 - HGI48_RS00435 0.66 +1.7 110,709 - HGI48_RS00435 0.66 +0.0 110,709 - HGI48_RS00435 0.66 -1.4 110,709 - HGI48_RS00435 0.66 -1.3 110,709 - HGI48_RS00435 0.66 +0.4 110,709 - HGI48_RS00435 0.66 -1.1 110,709 - HGI48_RS00435 0.66 -1.0 110,710 + HGI48_RS00435 0.66 -2.0 110,710 + HGI48_RS00435 0.66 -2.4 110,710 + HGI48_RS00435 0.66 +3.0 110,867 + HGI48_RS00435 0.87 -2.1 110,867 + HGI48_RS00435 0.87 -0.3 110,868 - HGI48_RS00435 0.87 -1.6 110,970 + -0.9 110,970 + -0.4 110,971 - +2.6 110,971 - -0.8 110,971 - -1.7 110,971 - +0.4 110,971 - +0.3 110,974 + -1.3 110,974 + -0.9 110,974 + +0.0 110,974 + +2.6 110,975 - -0.3 110,975 - -0.6 110,975 - +0.8 110,975 - -0.8 111,001 - +1.8 111,001 - +1.2 111,076 + +2.8 111,077 - HGI48_RS00440 0.19 +1.0 111,077 - HGI48_RS00440 0.19 -0.4 111,088 + HGI48_RS00440 0.20 -0.7 111,088 + HGI48_RS00440 0.20 +0.6 111,301 - +1.6 111,301 - HGI48_RS00440 0.53 +1.5 111,304 - HGI48_RS00440 0.54 -1.3 111,318 + HGI48_RS00440 0.56 +0.3 111,319 - -0.6 111,319 - HGI48_RS00440 0.56 +0.2 111,511 - HGI48_RS00440 0.86 -1.6 111,654 + +0.4 111,654 + -1.6 111,655 - +0.4 111,743 + -0.8 111,743 + -1.5 111,743 + -1.6 111,744 - +0.5 111,744 - -0.7 111,744 - -0.3 111,744 - +0.3 111,744 - +0.2 111,795 + +1.0 111,795 + -0.5 111,796 - -1.6 111,796 - -2.0 111,796 - +0.0 111,796 - -1.6 111,796 - -0.8 111,796 - -2.0 111,796 - -0.8 111,796 - +0.0 111,796 - -0.3 111,798 + -0.3 111,798 + +1.0 111,798 + +0.6 111,798 + -1.6 111,799 - -0.3 111,799 - +0.3 111,799 - -1.6 111,799 - +0.0 111,799 - +1.9 111,799 - -1.6 111,804 + -0.8 111,805 - -1.1 111,809 + -0.7 111,809 + +0.6 111,809 + +0.0 111,809 + +0.1 111,809 + -0.1 111,809 + +0.2 111,810 - +0.8 111,810 - -0.0 111,810 - +0.0 111,810 - -1.6 111,810 - -1.9 111,810 - +1.9 111,810 - -1.6 111,810 - +0.3 111,848 + +0.0 111,849 - -0.8 111,862 + -0.3 111,862 + -1.1 111,862 + -0.2 111,863 - +1.3 112,021 + HGI48_RS00445 0.14 +0.3 112,021 + HGI48_RS00445 0.14 +1.0 112,022 - HGI48_RS00445 0.15 -0.7 112,104 + HGI48_RS00445 0.23 -1.0 112,126 - HGI48_RS00445 0.26 +0.0 112,160 + HGI48_RS00445 0.29 -2.0 112,160 + HGI48_RS00445 0.29 -0.5 112,160 + HGI48_RS00445 0.29 +0.0 112,161 - HGI48_RS00445 0.29 -0.2 112,167 + HGI48_RS00445 0.30 +1.0 112,168 - +2.2 112,201 + HGI48_RS00445 0.34 -1.0 112,201 + HGI48_RS00445 0.34 +0.9 112,201 + HGI48_RS00445 0.34 -0.6 112,202 - HGI48_RS00445 0.34 +1.0 112,202 - HGI48_RS00445 0.34 +1.9 112,202 - HGI48_RS00445 0.34 -1.3 112,202 - HGI48_RS00445 0.34 +0.2 112,202 - HGI48_RS00445 0.34 -2.7 112,266 - HGI48_RS00445 0.41 -2.0 112,267 + HGI48_RS00445 0.41 -1.3 112,267 + HGI48_RS00445 0.41 -0.2 112,267 + HGI48_RS00445 0.41 +0.0 112,267 + HGI48_RS00445 0.41 +0.3 112,268 - HGI48_RS00445 0.41 -0.3 112,268 - HGI48_RS00445 0.41 +1.0 112,278 + HGI48_RS00445 0.42 -0.2 112,278 + HGI48_RS00445 0.42 -0.0 112,278 + HGI48_RS00445 0.42 -1.6 112,340 + HGI48_RS00445 0.48 +1.4 112,340 + HGI48_RS00445 0.48 -1.3 112,354 + HGI48_RS00445 0.50 -0.3 112,355 - HGI48_RS00445 0.50 +0.1 112,589 - HGI48_RS00445 0.75 +1.0 112,589 - HGI48_RS00445 0.75 +0.4 112,589 - -0.6 112,589 - HGI48_RS00445 0.75 +0.3 112,589 - HGI48_RS00445 0.75 +0.0 112,592 + HGI48_RS00445 0.75 +0.3 112,592 + HGI48_RS00445 0.75 +0.7 112,593 - HGI48_RS00445 0.75 -1.2 112,593 - HGI48_RS00445 0.75 -1.3 112,593 - HGI48_RS00445 0.75 -0.4 112,593 - HGI48_RS00445 0.75 -1.3 112,593 - HGI48_RS00445 0.75 +0.4 112,593 - HGI48_RS00445 0.75 -1.3 112,593 - HGI48_RS00445 0.75 +1.8 112,593 - HGI48_RS00445 0.75 +0.7
Or see this region's nucleotide sequence