Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00345 and HGI48_RS00350 overlap by 6 nucleotides HGI48_RS00350 and HGI48_RS00355 are separated by 119 nucleotides HGI48_RS00355 and HGI48_RS00360 are separated by 96 nucleotides HGI48_RS00360 and HGI48_RS00365 are separated by 358 nucleotides
HGI48_RS00345: HGI48_RS00345 - nickel/cobalt efflux protein RcnA, at 88,219 to 89,160
_RS00345
HGI48_RS00350: HGI48_RS00350 - hypothetical protein, at 89,155 to 89,355
_RS00350
HGI48_RS00355: HGI48_RS00355 - argininosuccinate synthase, at 89,475 to 90,824
_RS00355
HGI48_RS00360: HGI48_RS00360 - MarR family transcriptional regulator, at 90,921 to 91,421
_RS00360
HGI48_RS00365: HGI48_RS00365 - DMT family transporter, at 91,780 to 92,673
_RS00365
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.588 kb on - strand, within HGI48_RS00345 at 88.723 kb on - strand, within HGI48_RS00345 at 88.781 kb on - strand, within HGI48_RS00345 at 88.944 kb on + strand, within HGI48_RS00345 at 88.945 kb on - strand at 88.945 kb on - strand, within HGI48_RS00345 at 89.086 kb on + strand at 89.086 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.124 kb on + strand at 89.124 kb on + strand at 89.125 kb on - strand at 89.125 kb on - strand at 89.159 kb on - strand at 89.435 kb on + strand at 89.435 kb on + strand at 89.436 kb on - strand at 89.442 kb on - strand at 89.467 kb on + strand at 89.468 kb on - strand at 89.468 kb on - strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.474 kb on + strand at 89.474 kb on + strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.543 kb on + strand at 89.589 kb on + strand at 89.590 kb on - strand at 89.590 kb on - strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.631 kb on + strand, within HGI48_RS00355 at 89.631 kb on + strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand at 89.632 kb on - strand, within HGI48_RS00355 at 89.696 kb on + strand, within HGI48_RS00355 at 89.748 kb on - strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.846 kb on + strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.868 kb on + strand, within HGI48_RS00355 at 89.869 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.999 kb on + strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.021 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand at 90.045 kb on + strand, within HGI48_RS00355 at 90.046 kb on - strand at 90.046 kb on - strand, within HGI48_RS00355 at 90.046 kb on - strand, within HGI48_RS00355 at 90.051 kb on - strand, within HGI48_RS00355 at 90.125 kb on + strand, within HGI48_RS00355 at 90.144 kb on - strand, within HGI48_RS00355 at 90.266 kb on + strand, within HGI48_RS00355 at 90.267 kb on - strand, within HGI48_RS00355 at 90.320 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.411 kb on - strand, within HGI48_RS00355 at 90.469 kb on - strand, within HGI48_RS00355 at 90.602 kb on - strand, within HGI48_RS00355 at 90.618 kb on + strand, within HGI48_RS00355 at 90.619 kb on - strand, within HGI48_RS00355 at 90.619 kb on - strand, within HGI48_RS00355 at 90.698 kb on + strand at 90.699 kb on - strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.822 kb on + strand at 90.822 kb on + strand at 90.839 kb on + strand at 90.922 kb on + strand at 90.922 kb on + strand at 90.922 kb on + strand at 91.191 kb on + strand, within HGI48_RS00360 at 91.213 kb on + strand, within HGI48_RS00360 at 91.273 kb on + strand, within HGI48_RS00360 at 91.273 kb on + strand, within HGI48_RS00360 at 91.284 kb on + strand, within HGI48_RS00360 at 91.284 kb on + strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.394 kb on + strand at 91.395 kb on - strand at 91.443 kb on + strand at 91.473 kb on + strand at 91.474 kb on - strand at 91.481 kb on + strand at 91.482 kb on - strand at 91.509 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.630 kb on - strand at 91.630 kb on - strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.651 kb on - strand at 91.720 kb on + strand at 91.721 kb on - strand at 91.721 kb on - strand at 91.735 kb on + strand at 91.735 kb on + strand at 91.736 kb on - strand at 91.736 kb on - strand at 91.787 kb on + strand at 91.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 88,587 + HGI48_RS00345 0.39 -0.1 88,587 + HGI48_RS00345 0.39 +0.7 88,587 + HGI48_RS00345 0.39 -0.8 88,588 - HGI48_RS00345 0.39 +1.6 88,723 - HGI48_RS00345 0.54 -0.6 88,781 - HGI48_RS00345 0.60 -2.0 88,944 + HGI48_RS00345 0.77 +0.4 88,945 - +1.0 88,945 - HGI48_RS00345 0.77 -0.3 89,086 + -0.3 89,086 + +0.0 89,122 + +0.3 89,122 + +0.5 89,122 + +1.3 89,122 + +0.3 89,122 + -1.1 89,122 + +0.5 89,122 + -0.2 89,122 + -0.2 89,122 + -0.6 89,122 + +2.2 89,122 + +0.4 89,122 + -0.2 89,122 + +0.0 89,122 + +0.2 89,122 + +0.3 89,122 + +0.8 89,123 - -1.6 89,123 - +2.6 89,123 - -2.4 89,123 - +0.0 89,123 - -1.0 89,123 - +0.6 89,123 - +0.3 89,124 + -0.8 89,124 + +0.2 89,125 - -1.7 89,125 - -0.4 89,159 - -0.8 89,435 + +0.4 89,435 + -0.6 89,436 - -0.8 89,442 - -2.4 89,467 + -0.2 89,468 - -1.6 89,468 - -2.0 89,470 + +0.0 89,470 + -2.8 89,470 + -1.8 89,470 + +0.7 89,470 + -1.0 89,470 + +0.5 89,470 + +0.0 89,471 - +0.7 89,471 - +1.0 89,471 - +0.2 89,471 - -0.9 89,471 - +0.0 89,471 - +1.5 89,471 - -1.0 89,474 + +1.0 89,474 + -1.6 89,475 - -0.1 89,475 - +1.0 89,475 - +0.2 89,475 - -0.4 89,475 - -2.4 89,475 - +1.3 89,475 - -0.6 89,475 - -1.6 89,475 - +0.6 89,543 + +4.3 89,589 + +1.0 89,590 - -0.4 89,590 - -2.3 89,595 + -1.1 89,595 + -0.5 89,595 + +2.4 89,595 + -0.1 89,595 + -1.1 89,596 - -0.8 89,596 - -1.8 89,596 - -1.1 89,596 - -0.1 89,596 - -0.4 89,596 - +0.4 89,631 + HGI48_RS00355 0.12 +0.6 89,631 + HGI48_RS00355 0.12 +0.7 89,632 - HGI48_RS00355 0.12 +0.3 89,632 - HGI48_RS00355 0.12 -0.3 89,632 - HGI48_RS00355 0.12 +0.0 89,632 - +1.0 89,632 - HGI48_RS00355 0.12 -2.0 89,696 + HGI48_RS00355 0.16 -0.6 89,748 - HGI48_RS00355 0.20 +0.9 89,769 + HGI48_RS00355 0.22 -2.3 89,769 + HGI48_RS00355 0.22 +1.1 89,769 + HGI48_RS00355 0.22 -0.6 89,769 + HGI48_RS00355 0.22 -0.3 89,769 + HGI48_RS00355 0.22 -0.6 89,769 + HGI48_RS00355 0.22 -0.2 89,770 - HGI48_RS00355 0.22 -0.7 89,770 - HGI48_RS00355 0.22 -2.0 89,846 + HGI48_RS00355 0.27 -1.3 89,847 - HGI48_RS00355 0.28 -1.0 89,847 - HGI48_RS00355 0.28 -0.4 89,847 - HGI48_RS00355 0.28 +1.3 89,847 - HGI48_RS00355 0.28 -0.1 89,868 + HGI48_RS00355 0.29 -1.0 89,869 - HGI48_RS00355 0.29 -1.0 89,935 - HGI48_RS00355 0.34 -1.6 89,935 - HGI48_RS00355 0.34 +0.0 89,999 + HGI48_RS00355 0.39 -2.7 90,000 - HGI48_RS00355 0.39 +1.0 90,000 - HGI48_RS00355 0.39 -1.0 90,021 + HGI48_RS00355 0.40 -0.5 90,045 + HGI48_RS00355 0.42 -1.0 90,045 + +1.0 90,045 + HGI48_RS00355 0.42 -0.1 90,046 - +1.0 90,046 - HGI48_RS00355 0.42 -0.8 90,046 - HGI48_RS00355 0.42 -1.0 90,051 - HGI48_RS00355 0.43 +0.3 90,125 + HGI48_RS00355 0.48 -1.4 90,144 - HGI48_RS00355 0.50 -0.0 90,266 + HGI48_RS00355 0.59 +0.0 90,267 - HGI48_RS00355 0.59 +0.8 90,320 + HGI48_RS00355 0.63 -1.8 90,348 + HGI48_RS00355 0.65 -1.3 90,348 + HGI48_RS00355 0.65 -2.3 90,348 + HGI48_RS00355 0.65 -0.1 90,348 + HGI48_RS00355 0.65 +0.3 90,349 - HGI48_RS00355 0.65 -0.6 90,349 - HGI48_RS00355 0.65 +0.0 90,349 - HGI48_RS00355 0.65 -2.0 90,349 - HGI48_RS00355 0.65 -0.6 90,349 - HGI48_RS00355 0.65 +1.4 90,411 - HGI48_RS00355 0.69 +0.4 90,469 - HGI48_RS00355 0.74 +2.2 90,602 - HGI48_RS00355 0.83 -1.8 90,618 + HGI48_RS00355 0.85 -0.5 90,619 - HGI48_RS00355 0.85 -2.7 90,619 - HGI48_RS00355 0.85 -0.4 90,698 + -1.3 90,699 - -1.1 90,738 + -2.8 90,738 + -0.8 90,738 + +0.0 90,738 + -1.0 90,738 + +0.0 90,738 + -0.1 90,739 - -0.7 90,739 - +0.0 90,739 - +1.1 90,739 - +0.3 90,822 + +1.3 90,822 + -0.5 90,839 + +1.0 90,922 + -0.1 90,922 + +0.8 90,922 + +0.8 91,191 + HGI48_RS00360 0.54 -1.8 91,213 + HGI48_RS00360 0.58 -1.0 91,273 + HGI48_RS00360 0.70 -0.4 91,273 + HGI48_RS00360 0.70 -1.8 91,284 + HGI48_RS00360 0.72 +0.7 91,284 + HGI48_RS00360 0.72 +0.7 91,285 - HGI48_RS00360 0.73 +0.3 91,285 - HGI48_RS00360 0.73 -1.0 91,285 - HGI48_RS00360 0.73 +1.6 91,394 + +0.7 91,395 - -1.6 91,443 + +1.0 91,473 + -0.2 91,474 - +0.5 91,481 + +0.3 91,482 - +0.0 91,509 + -1.0 91,619 + -2.4 91,619 + +0.4 91,619 + +1.8 91,619 + +1.0 91,620 - +0.2 91,620 - -1.4 91,620 - +0.4 91,620 - +0.6 91,620 - +0.9 91,620 - +0.6 91,629 + -0.7 91,629 + -0.2 91,629 + -0.1 91,629 + -1.3 91,630 - -0.9 91,630 - -0.6 91,650 + +0.3 91,650 + -0.8 91,650 + +0.0 91,650 + -0.8 91,650 + +0.0 91,651 - -0.2 91,720 + +1.9 91,721 - +1.8 91,721 - -0.6 91,735 + -1.3 91,735 + -0.1 91,736 - +1.0 91,736 - -0.2 91,787 + +0.1 91,788 - -2.0
Or see this region's nucleotide sequence