Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00200

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00190 and HGI48_RS00195 are separated by 57 nucleotidesHGI48_RS00195 and HGI48_RS00200 overlap by 4 nucleotidesHGI48_RS00200 and HGI48_RS00205 are separated by 198 nucleotides HGI48_RS00190: HGI48_RS00190 - TIGR02646 family protein, at 49,418 to 50,065 _RS00190 HGI48_RS00195: HGI48_RS00195 - N-acetyltransferase, at 50,123 to 50,578 _RS00195 HGI48_RS00200: HGI48_RS00200 - DNA-3-methyladenine glycosylase I, at 50,575 to 51,135 _RS00200 HGI48_RS00205: HGI48_RS00205 - sulfite exporter TauE/SafE family protein, at 51,334 to 52,140 _RS00205 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 49.617 kb on + strand, within HGI48_RS00190at 49.657 kb on + strand, within HGI48_RS00190at 49.695 kb on - strand, within HGI48_RS00190at 49.702 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.721 kb on - strand, within HGI48_RS00190at 49.721 kb on - strand, within HGI48_RS00190at 49.721 kb on - strandat 49.830 kb on + strand, within HGI48_RS00190at 49.830 kb on + strand, within HGI48_RS00190at 49.830 kb on + strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.846 kb on + strand, within HGI48_RS00190at 49.863 kb on + strand, within HGI48_RS00190at 49.888 kb on + strand, within HGI48_RS00190at 49.888 kb on + strand, within HGI48_RS00190at 49.889 kb on - strand, within HGI48_RS00190at 49.907 kb on - strand, within HGI48_RS00190at 49.937 kb on + strand, within HGI48_RS00190at 49.937 kb on + strand, within HGI48_RS00190at 49.956 kb on + strand, within HGI48_RS00190at 49.957 kb on - strand, within HGI48_RS00190at 49.957 kb on - strand, within HGI48_RS00190at 49.960 kb on - strand, within HGI48_RS00190at 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.005 kb on - strandat 50.005 kb on - strandat 50.005 kb on - strandat 50.006 kb on + strandat 50.006 kb on + strandat 50.006 kb on + strandat 50.007 kb on - strandat 50.007 kb on - strandat 50.007 kb on - strandat 50.024 kb on - strandat 50.049 kb on - strandat 50.049 kb on - strandat 50.049 kb on - strandat 50.050 kb on + strandat 50.060 kb on + strandat 50.061 kb on - strandat 50.061 kb on - strandat 50.061 kb on - strandat 50.064 kb on - strandat 50.118 kb on + strandat 50.119 kb on - strandat 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strandat 50.174 kb on + strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.199 kb on + strand, within HGI48_RS00195at 50.218 kb on + strand, within HGI48_RS00195at 50.219 kb on - strand, within HGI48_RS00195at 50.219 kb on - strand, within HGI48_RS00195at 50.266 kb on - strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.303 kb on - strand, within HGI48_RS00195at 50.337 kb on + strand, within HGI48_RS00195at 50.338 kb on - strand, within HGI48_RS00195at 50.393 kb on - strand, within HGI48_RS00195at 50.421 kb on + strand, within HGI48_RS00195at 50.448 kb on + strand, within HGI48_RS00195at 50.448 kb on + strand, within HGI48_RS00195at 50.448 kb on + strandat 50.449 kb on - strand, within HGI48_RS00195at 50.449 kb on - strand, within HGI48_RS00195at 50.498 kb on - strand, within HGI48_RS00195at 50.531 kb on + strand, within HGI48_RS00195at 50.532 kb on - strand, within HGI48_RS00195at 50.640 kb on + strand, within HGI48_RS00200at 50.641 kb on - strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.853 kb on + strand, within HGI48_RS00200at 50.854 kb on - strand, within HGI48_RS00200at 50.908 kb on + strandat 50.970 kb on - strand, within HGI48_RS00200at 51.089 kb on + strandat 51.089 kb on + strandat 51.099 kb on - strandat 51.099 kb on - strandat 51.176 kb on + strandat 51.186 kb on - strandat 51.240 kb on + strandat 51.241 kb on - strandat 51.313 kb on + strandat 51.313 kb on + strandat 51.313 kb on + strandat 51.313 kb on + strandat 51.313 kb on + strandat 51.314 kb on - strandat 51.314 kb on - strandat 51.314 kb on - strandat 51.314 kb on - strandat 51.315 kb on + strandat 51.315 kb on + strandat 51.316 kb on - strandat 51.316 kb on - strandat 51.332 kb on + strandat 51.333 kb on - strandat 51.333 kb on - strandat 51.358 kb on + strandat 51.359 kb on - strandat 51.359 kb on - strandat 51.388 kb on - strandat 51.388 kb on - strandat 51.420 kb on + strand, within HGI48_RS00205at 51.423 kb on + strand, within HGI48_RS00205at 51.423 kb on + strand, within HGI48_RS00205at 51.424 kb on - strand, within HGI48_RS00205at 51.424 kb on - strandat 51.424 kb on - strand, within HGI48_RS00205at 51.543 kb on + strand, within HGI48_RS00205at 51.688 kb on + strand, within HGI48_RS00205at 51.688 kb on + strand, within HGI48_RS00205at 51.689 kb on - strand, within HGI48_RS00205at 51.689 kb on - strand, within HGI48_RS00205at 51.689 kb on - strand, within HGI48_RS00205at 51.689 kb on - strand, within HGI48_RS00205at 51.757 kb on - strand, within HGI48_RS00205at 51.923 kb on - strand, within HGI48_RS00205at 51.923 kb on - strand, within HGI48_RS00205at 51.973 kb on + strand, within HGI48_RS00205at 51.973 kb on + strand, within HGI48_RS00205at 51.973 kb on + strand, within HGI48_RS00205at 51.973 kb on + strand, within HGI48_RS00205at 51.973 kb on + strand, within HGI48_RS00205at 51.974 kb on - strand, within HGI48_RS00205at 51.974 kb on - strand, within HGI48_RS00205at 51.974 kb on - strand, within HGI48_RS00205at 52.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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49,617 + HGI48_RS00190 0.31 -0.8
49,657 + HGI48_RS00190 0.37 +0.3
49,695 - HGI48_RS00190 0.43 -0.6
49,702 + HGI48_RS00190 0.44 -2.4
49,720 + HGI48_RS00190 0.47 -2.0
49,720 + HGI48_RS00190 0.47 -1.2
49,720 + HGI48_RS00190 0.47 +2.3
49,720 + HGI48_RS00190 0.47 +0.3
49,720 + HGI48_RS00190 0.47 -1.7
49,721 - HGI48_RS00190 0.47 +0.0
49,721 - HGI48_RS00190 0.47 -0.4
49,721 - +0.4
49,830 + HGI48_RS00190 0.64 +0.2
49,830 + HGI48_RS00190 0.64 +0.6
49,830 + HGI48_RS00190 0.64 +0.6
49,831 - HGI48_RS00190 0.64 +0.4
49,831 - HGI48_RS00190 0.64 -1.6
49,831 - HGI48_RS00190 0.64 +2.1
49,846 + HGI48_RS00190 0.66 -1.3
49,863 + HGI48_RS00190 0.69 +0.0
49,888 + HGI48_RS00190 0.73 +0.0
49,888 + HGI48_RS00190 0.73 -0.5
49,889 - HGI48_RS00190 0.73 +0.5
49,907 - HGI48_RS00190 0.75 +0.8
49,937 + HGI48_RS00190 0.80 +0.5
49,937 + HGI48_RS00190 0.80 +0.6
49,956 + HGI48_RS00190 0.83 +0.0
49,957 - HGI48_RS00190 0.83 +0.7
49,957 - HGI48_RS00190 0.83 +0.4
49,960 - HGI48_RS00190 0.84 +0.0
50,004 + +1.8
50,004 + +0.4
50,004 + -2.4
50,004 + -1.6
50,004 + -3.0
50,005 - -1.1
50,005 - -0.6
50,005 - +0.4
50,006 + +0.3
50,006 + -1.1
50,006 + +0.4
50,007 - -0.4
50,007 - +0.6
50,007 - +0.6
50,024 - +1.2
50,049 - -0.6
50,049 - -0.8
50,049 - -1.1
50,050 + -0.3
50,060 + +0.5
50,061 - -2.1
50,061 - +1.0
50,061 - -1.0
50,064 - -0.1
50,118 + -0.6
50,119 - +1.0
50,170 + HGI48_RS00195 0.10 +0.1
50,170 + HGI48_RS00195 0.10 -0.9
50,170 + HGI48_RS00195 0.10 -0.9
50,170 + HGI48_RS00195 0.10 +0.1
50,170 + HGI48_RS00195 0.10 -0.4
50,171 - HGI48_RS00195 0.11 -0.3
50,171 - HGI48_RS00195 0.11 -0.6
50,171 - HGI48_RS00195 0.11 -0.6
50,171 - HGI48_RS00195 0.11 -0.4
50,171 - HGI48_RS00195 0.11 +0.0
50,171 - +1.0
50,174 + HGI48_RS00195 0.11 -1.1
50,175 - HGI48_RS00195 0.11 -1.3
50,175 - HGI48_RS00195 0.11 -1.8
50,175 - HGI48_RS00195 0.11 +1.2
50,175 - HGI48_RS00195 0.11 -1.5
50,199 + HGI48_RS00195 0.17 -1.0
50,218 + HGI48_RS00195 0.21 -1.7
50,219 - HGI48_RS00195 0.21 -1.0
50,219 - HGI48_RS00195 0.21 -0.8
50,266 - HGI48_RS00195 0.31 -2.4
50,302 + HGI48_RS00195 0.39 +0.1
50,302 + HGI48_RS00195 0.39 -1.1
50,302 + HGI48_RS00195 0.39 +2.0
50,303 - HGI48_RS00195 0.39 -0.6
50,337 + HGI48_RS00195 0.47 -1.8
50,338 - HGI48_RS00195 0.47 -2.0
50,393 - HGI48_RS00195 0.59 -0.7
50,421 + HGI48_RS00195 0.65 +0.0
50,448 + HGI48_RS00195 0.71 -0.4
50,448 + HGI48_RS00195 0.71 -0.1
50,448 + +0.4
50,449 - HGI48_RS00195 0.71 +0.0
50,449 - HGI48_RS00195 0.71 -0.3
50,498 - HGI48_RS00195 0.82 -0.3
50,531 + HGI48_RS00195 0.89 -0.1
50,532 - HGI48_RS00195 0.90 +1.0
50,640 + HGI48_RS00200 0.12 -0.4
50,641 - HGI48_RS00200 0.12 -1.4
50,790 + HGI48_RS00200 0.38 -2.1
50,790 + HGI48_RS00200 0.38 -0.1
50,790 + HGI48_RS00200 0.38 -0.3
50,853 + HGI48_RS00200 0.50 -2.0
50,854 - HGI48_RS00200 0.50 -0.7
50,908 + +0.4
50,970 - HGI48_RS00200 0.70 -2.0
51,089 + -1.1
51,089 + +0.3
51,099 - -1.0
51,099 - -0.5
51,176 + -2.0
51,186 - +0.4
51,240 + +0.8
51,241 - -0.3
51,313 + -2.0
51,313 + -0.6
51,313 + +0.0
51,313 + -1.3
51,313 + -0.7
51,314 - -1.0
51,314 - -1.0
51,314 - +0.1
51,314 - -2.8
51,315 + -0.3
51,315 + +1.8
51,316 - -0.2
51,316 - +1.6
51,332 + -0.7
51,333 - -1.0
51,333 - -1.0
51,358 + -0.6
51,359 - -1.6
51,359 - -0.6
51,388 - +0.2
51,388 - +0.4
51,420 + HGI48_RS00205 0.11 -1.1
51,423 + HGI48_RS00205 0.11 -2.3
51,423 + HGI48_RS00205 0.11 +0.3
51,424 - HGI48_RS00205 0.11 -0.3
51,424 - +0.0
51,424 - HGI48_RS00205 0.11 +0.5
51,543 + HGI48_RS00205 0.26 -1.0
51,688 + HGI48_RS00205 0.44 -1.0
51,688 + HGI48_RS00205 0.44 -1.8
51,689 - HGI48_RS00205 0.44 +0.6
51,689 - HGI48_RS00205 0.44 -0.2
51,689 - HGI48_RS00205 0.44 +0.3
51,689 - HGI48_RS00205 0.44 -0.6
51,757 - HGI48_RS00205 0.52 -0.2
51,923 - HGI48_RS00205 0.73 +0.9
51,923 - HGI48_RS00205 0.73 +0.2
51,973 + HGI48_RS00205 0.79 -1.0
51,973 + HGI48_RS00205 0.79 +0.3
51,973 + HGI48_RS00205 0.79 -1.8
51,973 + HGI48_RS00205 0.79 +1.6
51,973 + HGI48_RS00205 0.79 +2.3
51,974 - HGI48_RS00205 0.79 -0.1
51,974 - HGI48_RS00205 0.79 -1.1
51,974 - HGI48_RS00205 0.79 +1.2
52,122 + +0.7

Or see this region's nucleotide sequence