Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21695 and HGI48_RS21700 are separated by 17 nucleotides HGI48_RS21700 and HGI48_RS21705 are separated by 31 nucleotides
HGI48_RS21695: HGI48_RS21695 - N-6 DNA methylase, at 4,841,571 to 4,843,283
_RS21695
HGI48_RS21700: HGI48_RS21700 - DNA damage-inducible protein D, at 4,843,301 to 4,844,170
_RS21700
HGI48_RS21705: HGI48_RS21705 - DEAD/DEAH box helicase family protein, at 4,844,202 to 4,847,000
_RS21705
Position (kb) 4843
4844
4845 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4842.316 kb on + strand, within HGI48_RS21695 at 4842.424 kb on + strand, within HGI48_RS21695 at 4842.553 kb on + strand, within HGI48_RS21695 at 4842.553 kb on + strand, within HGI48_RS21695 at 4842.553 kb on + strand, within HGI48_RS21695 at 4842.553 kb on + strand, within HGI48_RS21695 at 4842.559 kb on + strand, within HGI48_RS21695 at 4842.560 kb on - strand, within HGI48_RS21695 at 4842.857 kb on + strand, within HGI48_RS21695 at 4842.857 kb on + strand, within HGI48_RS21695 at 4842.909 kb on + strand, within HGI48_RS21695 at 4842.910 kb on - strand, within HGI48_RS21695 at 4843.037 kb on + strand, within HGI48_RS21695 at 4843.082 kb on + strand, within HGI48_RS21695 at 4843.102 kb on + strand, within HGI48_RS21695 at 4843.303 kb on - strand at 4843.303 kb on - strand at 4843.303 kb on - strand at 4843.303 kb on - strand at 4843.303 kb on - strand at 4843.303 kb on - strand at 4843.310 kb on - strand at 4843.427 kb on + strand, within HGI48_RS21700 at 4843.428 kb on - strand, within HGI48_RS21700 at 4843.466 kb on - strand, within HGI48_RS21700 at 4843.505 kb on + strand, within HGI48_RS21700 at 4843.505 kb on + strand, within HGI48_RS21700 at 4843.505 kb on + strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.506 kb on - strand, within HGI48_RS21700 at 4843.531 kb on + strand, within HGI48_RS21700 at 4843.532 kb on - strand, within HGI48_RS21700 at 4843.609 kb on + strand, within HGI48_RS21700 at 4843.610 kb on - strand at 4843.786 kb on + strand, within HGI48_RS21700 at 4843.786 kb on + strand at 4843.786 kb on + strand, within HGI48_RS21700 at 4843.787 kb on - strand, within HGI48_RS21700 at 4843.830 kb on + strand, within HGI48_RS21700 at 4843.830 kb on + strand, within HGI48_RS21700 at 4843.831 kb on - strand, within HGI48_RS21700 at 4843.831 kb on - strand, within HGI48_RS21700 at 4843.909 kb on + strand at 4843.910 kb on - strand, within HGI48_RS21700 at 4843.910 kb on - strand, within HGI48_RS21700 at 4844.156 kb on - strand at 4844.156 kb on - strand at 4844.156 kb on - strand at 4844.156 kb on - strand at 4844.156 kb on - strand at 4844.156 kb on - strand at 4844.158 kb on + strand at 4844.159 kb on - strand at 4844.204 kb on - strand at 4844.204 kb on - strand at 4844.259 kb on + strand at 4844.260 kb on - strand at 4844.260 kb on - strand at 4844.260 kb on - strand at 4844.260 kb on - strand at 4844.260 kb on - strand at 4844.270 kb on + strand at 4844.270 kb on + strand at 4844.270 kb on + strand at 4844.271 kb on - strand at 4844.271 kb on - strand at 4844.271 kb on - strand at 4844.322 kb on + strand at 4844.342 kb on + strand at 4844.343 kb on - strand at 4844.370 kb on + strand at 4844.370 kb on + strand at 4844.371 kb on - strand at 4844.371 kb on - strand at 4844.393 kb on + strand at 4844.460 kb on - strand at 4844.507 kb on + strand, within HGI48_RS21705 at 4844.507 kb on + strand, within HGI48_RS21705 at 4844.507 kb on + strand, within HGI48_RS21705 at 4844.508 kb on - strand, within HGI48_RS21705 at 4844.508 kb on - strand, within HGI48_RS21705 at 4844.509 kb on + strand, within HGI48_RS21705 at 4844.510 kb on - strand, within HGI48_RS21705 at 4844.510 kb on - strand, within HGI48_RS21705 at 4844.619 kb on + strand, within HGI48_RS21705 at 4844.619 kb on + strand, within HGI48_RS21705 at 4844.619 kb on + strand, within HGI48_RS21705 at 4844.619 kb on + strand, within HGI48_RS21705 at 4844.620 kb on - strand, within HGI48_RS21705 at 4844.620 kb on - strand, within HGI48_RS21705 at 4844.727 kb on - strand, within HGI48_RS21705 at 4844.757 kb on + strand, within HGI48_RS21705 at 4844.757 kb on + strand, within HGI48_RS21705 at 4844.757 kb on + strand, within HGI48_RS21705 at 4844.757 kb on + strand, within HGI48_RS21705 at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.758 kb on - strand at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.758 kb on - strand, within HGI48_RS21705 at 4844.810 kb on + strand, within HGI48_RS21705 at 4844.810 kb on + strand, within HGI48_RS21705 at 4844.810 kb on + strand, within HGI48_RS21705 at 4844.873 kb on + strand, within HGI48_RS21705 at 4844.874 kb on - strand, within HGI48_RS21705 at 4844.919 kb on + strand at 4844.919 kb on + strand, within HGI48_RS21705 at 4844.919 kb on + strand, within HGI48_RS21705 at 4844.919 kb on + strand, within HGI48_RS21705 at 4844.920 kb on - strand, within HGI48_RS21705 at 4844.973 kb on - strand, within HGI48_RS21705 at 4844.973 kb on - strand, within HGI48_RS21705 at 4844.981 kb on + strand, within HGI48_RS21705 at 4844.982 kb on - strand at 4844.982 kb on - strand, within HGI48_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,842,316 + HGI48_RS21695 0.43 +0.2 4,842,424 + HGI48_RS21695 0.50 +0.9 4,842,553 + HGI48_RS21695 0.57 -0.4 4,842,553 + HGI48_RS21695 0.57 +1.2 4,842,553 + HGI48_RS21695 0.57 +0.4 4,842,553 + HGI48_RS21695 0.57 -1.4 4,842,559 + HGI48_RS21695 0.58 -0.9 4,842,560 - HGI48_RS21695 0.58 -0.5 4,842,857 + HGI48_RS21695 0.75 -0.1 4,842,857 + HGI48_RS21695 0.75 -1.9 4,842,909 + HGI48_RS21695 0.78 -1.4 4,842,910 - HGI48_RS21695 0.78 +0.6 4,843,037 + HGI48_RS21695 0.86 -0.5 4,843,082 + HGI48_RS21695 0.88 -0.1 4,843,102 + HGI48_RS21695 0.89 +0.9 4,843,303 - -0.8 4,843,303 - +0.1 4,843,303 - -0.4 4,843,303 - +0.6 4,843,303 - -0.6 4,843,303 - -0.1 4,843,310 - +0.9 4,843,427 + HGI48_RS21700 0.14 -1.4 4,843,428 - HGI48_RS21700 0.15 -0.2 4,843,466 - HGI48_RS21700 0.19 -1.1 4,843,505 + HGI48_RS21700 0.23 -0.3 4,843,505 + HGI48_RS21700 0.23 +0.7 4,843,505 + HGI48_RS21700 0.23 -1.4 4,843,506 - HGI48_RS21700 0.24 -0.4 4,843,506 - HGI48_RS21700 0.24 +0.6 4,843,506 - HGI48_RS21700 0.24 -0.6 4,843,506 - HGI48_RS21700 0.24 -2.5 4,843,506 - HGI48_RS21700 0.24 -0.4 4,843,506 - HGI48_RS21700 0.24 -0.3 4,843,506 - HGI48_RS21700 0.24 +0.5 4,843,506 - HGI48_RS21700 0.24 -1.6 4,843,506 - HGI48_RS21700 0.24 -0.2 4,843,531 + HGI48_RS21700 0.26 +1.3 4,843,532 - HGI48_RS21700 0.27 -1.4 4,843,609 + HGI48_RS21700 0.35 +0.7 4,843,610 - +0.9 4,843,786 + HGI48_RS21700 0.56 +0.9 4,843,786 + -0.1 4,843,786 + HGI48_RS21700 0.56 +0.9 4,843,787 - HGI48_RS21700 0.56 -0.9 4,843,830 + HGI48_RS21700 0.61 +0.3 4,843,830 + HGI48_RS21700 0.61 -2.1 4,843,831 - HGI48_RS21700 0.61 -0.8 4,843,831 - HGI48_RS21700 0.61 -0.1 4,843,909 + +0.9 4,843,910 - HGI48_RS21700 0.70 -1.2 4,843,910 - HGI48_RS21700 0.70 +0.4 4,844,156 - +1.1 4,844,156 - +3.2 4,844,156 - -0.0 4,844,156 - -1.1 4,844,156 - +0.4 4,844,156 - -0.6 4,844,158 + -1.4 4,844,159 - +1.2 4,844,204 - -0.8 4,844,204 - +2.2 4,844,259 + -0.5 4,844,260 - -1.4 4,844,260 - -1.5 4,844,260 - -1.4 4,844,260 - -1.1 4,844,260 - +0.1 4,844,270 + -1.5 4,844,270 + -1.4 4,844,270 + -1.6 4,844,271 - +1.4 4,844,271 - +0.6 4,844,271 - -1.1 4,844,322 + -2.0 4,844,342 + -1.6 4,844,343 - +0.9 4,844,370 + +0.7 4,844,370 + +1.4 4,844,371 - +0.4 4,844,371 - +0.9 4,844,393 + +0.2 4,844,460 - -0.5 4,844,507 + HGI48_RS21705 0.11 -0.1 4,844,507 + HGI48_RS21705 0.11 -1.5 4,844,507 + HGI48_RS21705 0.11 +1.9 4,844,508 - HGI48_RS21705 0.11 +0.8 4,844,508 - HGI48_RS21705 0.11 +0.7 4,844,509 + HGI48_RS21705 0.11 -0.9 4,844,510 - HGI48_RS21705 0.11 +0.6 4,844,510 - HGI48_RS21705 0.11 -2.1 4,844,619 + HGI48_RS21705 0.15 -1.1 4,844,619 + HGI48_RS21705 0.15 -0.5 4,844,619 + HGI48_RS21705 0.15 -0.5 4,844,619 + HGI48_RS21705 0.15 +0.2 4,844,620 - HGI48_RS21705 0.15 +1.6 4,844,620 - HGI48_RS21705 0.15 -0.1 4,844,727 - HGI48_RS21705 0.19 -1.4 4,844,757 + HGI48_RS21705 0.20 -0.1 4,844,757 + HGI48_RS21705 0.20 -0.6 4,844,757 + HGI48_RS21705 0.20 -1.4 4,844,757 + HGI48_RS21705 0.20 -0.2 4,844,758 - HGI48_RS21705 0.20 +0.9 4,844,758 - HGI48_RS21705 0.20 +0.5 4,844,758 - HGI48_RS21705 0.20 -0.4 4,844,758 - HGI48_RS21705 0.20 +0.2 4,844,758 - +1.9 4,844,758 - HGI48_RS21705 0.20 -0.1 4,844,758 - HGI48_RS21705 0.20 -0.1 4,844,810 + HGI48_RS21705 0.22 +0.2 4,844,810 + HGI48_RS21705 0.22 +0.9 4,844,810 + HGI48_RS21705 0.22 -0.4 4,844,873 + HGI48_RS21705 0.24 -0.6 4,844,874 - HGI48_RS21705 0.24 -1.4 4,844,919 + -0.6 4,844,919 + HGI48_RS21705 0.26 -1.1 4,844,919 + HGI48_RS21705 0.26 -1.6 4,844,919 + HGI48_RS21705 0.26 +1.3 4,844,920 - HGI48_RS21705 0.26 +2.3 4,844,973 - HGI48_RS21705 0.28 +0.9 4,844,973 - HGI48_RS21705 0.28 -0.4 4,844,981 + HGI48_RS21705 0.28 -0.4 4,844,982 - +1.9 4,844,982 - HGI48_RS21705 0.28 -2.4
Or see this region's nucleotide sequence