Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20840

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,652,379	+		HGI48_RS20835	0.68	+0.1
4,652,380	-		HGI48_RS20835	0.68	-0.6
4,652,548	+		HGI48_RS20835	0.81	-0.3
4,652,548	+		HGI48_RS20835	0.81	-0.1
4,652,548	+		HGI48_RS20835	0.81	+0.1
4,652,549	-		HGI48_RS20835	0.81	+0.4
4,652,549	-		HGI48_RS20835	0.81	-0.1
4,652,631	+		HGI48_RS20835	0.87	-1.1
4,652,665	+		HGI48_RS20835	0.90	+0.1
4,652,666	-		HGI48_RS20835	0.90	-0.6
4,652,752	+				+1.8
4,652,874	-				+1.5
4,652,903	-				+2.5
4,652,910	+				-0.3
4,652,911	-				-0.2
4,652,911	-				-2.1
4,652,986	-				+0.9
4,653,047	+				-0.1
4,653,127	+				+0.5
4,653,127	+				-2.3
4,653,128	-				+0.1
4,653,181	+				-0.4
4,653,202	+				+0.5
4,653,243	+				+0.4
4,653,243	+				+2.3
4,653,243	+				-0.5
4,653,243	+				+2.3
4,653,243	+				-2.5
4,653,243	+				+0.4
4,653,244	-				-0.4
4,653,246	+				-0.2
4,653,246	+				-1.1
4,653,246	+				+0.1
4,653,247	-				+0.9
4,653,247	-				-0.6
4,653,247	-				+0.9
4,653,317	+		HGI48_RS20840	0.12	-2.2
4,653,317	+		HGI48_RS20840	0.12	-1.5
4,653,336	+		HGI48_RS20840	0.14	-1.6
4,653,337	-		HGI48_RS20840	0.14	-0.1
4,653,337	-		HGI48_RS20840	0.14	-2.8
4,653,393	+		HGI48_RS20840	0.20	+0.9
4,653,394	-		HGI48_RS20840	0.20	-0.4
4,653,394	-		HGI48_RS20840	0.20	-0.1
4,653,397	+		HGI48_RS20840	0.20	+1.7
4,653,398	-		HGI48_RS20840	0.20	+0.9
4,653,398	-		HGI48_RS20840	0.20	+0.4
4,653,405	+		HGI48_RS20840	0.21	-0.1
4,653,405	+		HGI48_RS20840	0.21	-0.3
4,653,444	+		HGI48_RS20840	0.25	+0.1
4,653,444	+		HGI48_RS20840	0.25	+0.2
4,653,444	+		HGI48_RS20840	0.25	-1.4
4,653,445	-		HGI48_RS20840	0.25	-1.4
4,653,445	-		HGI48_RS20840	0.25	-0.1
4,653,445	-		HGI48_RS20840	0.25	-0.6
4,653,445	-		HGI48_RS20840	0.25	+0.4
4,653,450	+		HGI48_RS20840	0.25	-0.8
4,653,450	+		HGI48_RS20840	0.25	-1.1
4,653,451	-		HGI48_RS20840	0.25	-2.6
4,653,456	+		HGI48_RS20840	0.26	-1.6
4,653,456	+		HGI48_RS20840	0.26	+1.5
4,653,456	+		HGI48_RS20840	0.26	+0.9
4,653,457	-		HGI48_RS20840	0.26	-0.6
4,653,457	-		HGI48_RS20840	0.26	+1.5
4,653,457	-				-0.6
4,653,457	-		HGI48_RS20840	0.26	-0.0
4,653,457	-		HGI48_RS20840	0.26	-2.6
4,653,466	+		HGI48_RS20840	0.27	+0.1
4,653,466	+		HGI48_RS20840	0.27	-0.9
4,653,481	-		HGI48_RS20840	0.28	-0.4
4,653,693	+		HGI48_RS20840	0.50	-0.1
4,653,693	+		HGI48_RS20840	0.50	+0.6
4,653,693	+		HGI48_RS20840	0.50	-1.1
4,653,693	+		HGI48_RS20840	0.50	-0.1
4,653,693	+		HGI48_RS20840	0.50	-0.9
4,653,693	+		HGI48_RS20840	0.50	-2.2
4,653,693	+		HGI48_RS20840	0.50	+0.4
4,653,693	+		HGI48_RS20840	0.50	-1.1
4,653,693	+		HGI48_RS20840	0.50	-0.1
4,653,693	+		HGI48_RS20840	0.50	-0.7
4,653,693	+		HGI48_RS20840	0.50	-2.6
4,653,693	+		HGI48_RS20840	0.50	+0.1
4,653,693	+		HGI48_RS20840	0.50	-0.6
4,653,693	+		HGI48_RS20840	0.50	-0.4
4,653,693	+		HGI48_RS20840	0.50	+1.3
4,653,693	+		HGI48_RS20840	0.50	+0.2
4,653,693	+		HGI48_RS20840	0.50	-1.4
4,653,693	+				+1.4
4,653,693	+		HGI48_RS20840	0.50	-1.6
4,653,693	+		HGI48_RS20840	0.50	+0.5
4,653,693	+		HGI48_RS20840	0.50	-2.1
4,653,693	+		HGI48_RS20840	0.50	+1.2
4,653,694	-		HGI48_RS20840	0.50	+0.2
4,653,694	-		HGI48_RS20840	0.50	+0.5
4,653,694	-		HGI48_RS20840	0.50	-0.1
4,653,694	-		HGI48_RS20840	0.50	+0.2
4,653,694	-		HGI48_RS20840	0.50	-1.9
4,653,694	-		HGI48_RS20840	0.50	-0.1
4,653,694	-		HGI48_RS20840	0.50	+0.4
4,653,694	-		HGI48_RS20840	0.50	+0.9
4,653,694	-		HGI48_RS20840	0.50	-0.7
4,653,694	-		HGI48_RS20840	0.50	-1.1
4,653,694	-		HGI48_RS20840	0.50	-0.2
4,653,694	-		HGI48_RS20840	0.50	-1.1
4,653,694	-		HGI48_RS20840	0.50	-0.5
4,653,694	-				+0.4
4,653,694	-		HGI48_RS20840	0.50	+1.6
4,653,694	-		HGI48_RS20840	0.50	+0.2
4,653,715	-		HGI48_RS20840	0.52	+0.1
4,653,757	+		HGI48_RS20840	0.56	-0.5
4,653,757	+		HGI48_RS20840	0.56	+0.1
4,653,757	+		HGI48_RS20840	0.56	+0.9
4,653,757	+		HGI48_RS20840	0.56	-2.9
4,653,758	-		HGI48_RS20840	0.56	-0.6
4,653,758	-		HGI48_RS20840	0.56	-0.1
4,653,758	-		HGI48_RS20840	0.56	+0.1
4,653,758	-		HGI48_RS20840	0.56	-0.4
4,653,758	-				+2.5
4,653,804	+				-0.6
4,653,823	+		HGI48_RS20840	0.63	+0.9
4,653,823	+		HGI48_RS20840	0.63	+0.1
4,653,824	-		HGI48_RS20840	0.63	-0.7
4,653,824	-		HGI48_RS20840	0.63	+1.3
4,653,824	-		HGI48_RS20840	0.63	+1.4
4,653,824	-		HGI48_RS20840	0.63	-1.5
4,653,824	-		HGI48_RS20840	0.63	+0.4
4,653,824	-		HGI48_RS20840	0.63	-1.0
4,653,824	-		HGI48_RS20840	0.63	+0.7
4,653,824	-		HGI48_RS20840	0.63	-2.4
4,653,836	+		HGI48_RS20840	0.64	-0.3
4,653,837	-		HGI48_RS20840	0.64	-0.0
4,653,883	+		HGI48_RS20840	0.69	-3.1
4,653,916	-		HGI48_RS20840	0.72	+0.7
4,653,916	-		HGI48_RS20840	0.72	+0.2
4,654,002	+		HGI48_RS20840	0.81	-0.4
4,654,057	+		HGI48_RS20840	0.86	+0.2
4,654,058	-		HGI48_RS20840	0.86	+0.0
4,654,108	-				+0.0
4,654,108	-				+0.9
4,654,190	+				-1.6
4,654,196	+				+1.5
4,654,196	+				-0.5
4,654,196	+				-1.9
4,654,196	+				+0.4
4,654,196	+				-2.2
4,654,196	+				+1.1
4,654,196	+				-0.6
4,654,196	+				-1.9
4,654,197	-				-1.4
4,654,197	-				+0.5
4,654,197	-				+0.7
4,654,197	-				-2.2
4,654,197	-				-0.6
4,654,197	-				-0.2
4,654,197	-				+0.3
4,654,197	-				-0.6
4,654,308	+		HGI48_RS20845	0.21	-0.1
4,654,309	-		HGI48_RS20845	0.22	+0.9
4,654,392	+		HGI48_RS20845	0.39	-0.1
4,654,392	+		HGI48_RS20845	0.39	-0.4
4,654,392	+		HGI48_RS20845	0.39	+0.7
4,654,392	+		HGI48_RS20845	0.39	-0.4
4,654,393	-		HGI48_RS20845	0.40	-1.6
4,654,534	+		HGI48_RS20845	0.70	-0.1
4,654,535	-		HGI48_RS20845	0.70	-1.2
4,654,535	-		HGI48_RS20845	0.70	-0.3
4,654,644	+				+0.1
4,654,644	+				-0.6
4,654,644	+				-1.1
4,654,645	-				-1.6
4,654,645	-				-0.3
4,654,645	-				+0.1
4,654,645	-				-0.1
4,654,645	-				-0.7
4,654,649	+				-1.6
4,654,649	+				+0.4
4,654,649	+				-1.2
4,654,649	+				-0.6
4,654,649	+				-0.6
4,654,649	+				+0.6
4,654,649	+				+1.6
4,654,649	+				-0.1
4,654,649	+				+1.5
4,654,649	+				+0.5
4,654,650	-				-1.1
4,654,650	-				+0.9
4,654,650	-				-0.3
4,654,650	-				+0.4
4,654,650	-				-1.4
4,654,679	+				+0.4
4,654,679	+				-0.6
4,654,679	+				-0.2
4,654,679	+				-1.1
4,654,679	+				+1.9
4,654,680	-				-1.9
4,654,680	-				-0.2
4,654,680	-				+0.4
4,654,680	-				+0.1
4,654,706	+				+1.4
4,654,728	+				+1.4
4,654,728	+				-0.1
4,654,730	+				+2.2
4,654,730	+				-1.6
4,654,730	+				-0.6
4,654,730	+				-1.2
4,654,730	+				-0.7
4,654,730	+				+0.2
4,654,731	-				-1.1
4,654,731	-				-0.4
4,654,731	-				-0.2
4,654,791	-				-0.8
4,654,814	+				-1.6
4,654,815	-				+0.4
4,654,815	-				-0.8
4,654,844	+				-0.1
4,654,844	+				+0.3
4,654,845	-				-0.1
4,654,845	-				+0.3
4,654,919	+				+0.5
4,654,939	-				-2.2
4,654,940	+				-0.3
4,654,940	+				+0.3
4,654,940	+				-1.4
4,654,940	+				-0.1
4,654,941	-				+1.6
4,654,941	-				-1.2
4,654,941	-				-0.4
4,654,941	-				-0.6
4,654,941	-				+0.2
4,654,941	-				-0.3
4,654,941	-				+0.7
4,654,941	-				-0.3
4,654,971	+				+0.1
4,654,972	-				+0.4
4,654,972	-				-1.9
4,654,989	-				+1.3
4,655,023	+				-1.1
4,655,024	-				+0.5
4,655,024	-				-1.9
4,655,027	+				+0.1
4,655,027	+				-1.4
4,655,027	+				-0.8
4,655,027	+				+1.2
4,655,027	+				+0.5
4,655,027	+				+1.3
4,655,027	+				-0.3
4,655,027	+				-1.4
4,655,027	+				+1.2
4,655,028	-				+0.4
4,655,028	-				+0.0
4,655,028	-				-0.9
4,655,028	-				+0.9
4,655,028	-				-0.2
4,655,028	-				-0.4
4,655,028	-				-1.9
4,655,028	-				+0.2
4,655,028	-				+0.5
4,655,028	-				+0.4
4,655,028	-				-1.1
4,655,028	-				-0.1
4,655,028	-				-0.1
4,655,028	-				+0.9
4,655,061	-				+0.5
4,655,066	+				+0.4
4,655,066	+				-1.5
4,655,066	+				-1.6
4,655,067	-				-0.1
4,655,067	-				-1.6
4,655,070	-				-0.5
4,655,070	-				-1.1
4,655,110	-		HGI48_RS20850	0.11	-1.1
4,655,141	-		HGI48_RS20850	0.12	-1.2
4,655,153	+				-0.6
4,655,153	+		HGI48_RS20850	0.12	-0.1
4,655,153	+		HGI48_RS20850	0.12	+0.6
4,655,153	+		HGI48_RS20850	0.12	-0.5
4,655,153	+		HGI48_RS20850	0.12	+0.1
4,655,153	+		HGI48_RS20850	0.12	+0.6
4,655,153	+		HGI48_RS20850	0.12	-0.3
4,655,153	+		HGI48_RS20850	0.12	-0.1
4,655,153	+		HGI48_RS20850	0.12	+0.2
4,655,153	+		HGI48_RS20850	0.12	-1.4
4,655,154	-				+2.7
4,655,154	-		HGI48_RS20850	0.12	+0.6
4,655,154	-		HGI48_RS20850	0.12	-1.4
4,655,154	-		HGI48_RS20850	0.12	+1.1
4,655,154	-				+0.4
4,655,154	-		HGI48_RS20850	0.12	-0.1
4,655,154	-		HGI48_RS20850	0.12	-1.4
4,655,166	+		HGI48_RS20850	0.12	+0.4