Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20810

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,645,528	+		HGI48_RS20800	0.41	-0.4
4,645,528	+		HGI48_RS20800	0.41	+0.6
4,645,589	+		HGI48_RS20800	0.48	-0.7
4,645,590	-		HGI48_RS20800	0.48	+1.8
4,645,590	-		HGI48_RS20800	0.48	+0.4
4,645,590	-		HGI48_RS20800	0.48	+1.5
4,645,590	-		HGI48_RS20800	0.48	+1.4
4,645,590	-		HGI48_RS20800	0.48	-1.1
4,645,624	+		HGI48_RS20800	0.51	+1.9
4,645,624	+		HGI48_RS20800	0.51	-0.3
4,645,659	-		HGI48_RS20800	0.55	+1.0
4,645,659	-		HGI48_RS20800	0.55	+0.1
4,645,680	-		HGI48_RS20800	0.57	+1.6
4,645,680	-		HGI48_RS20800	0.57	-1.1
4,645,680	-		HGI48_RS20800	0.57	-0.2
4,645,683	+		HGI48_RS20800	0.57	+1.2
4,645,683	+		HGI48_RS20800	0.57	+0.6
4,645,683	+		HGI48_RS20800	0.57	+0.5
4,645,683	+		HGI48_RS20800	0.57	-1.1
4,645,683	+		HGI48_RS20800	0.57	-0.3
4,645,683	+		HGI48_RS20800	0.57	+1.2
4,645,683	+		HGI48_RS20800	0.57	-0.5
4,645,684	-		HGI48_RS20800	0.57	+1.7
4,645,684	-		HGI48_RS20800	0.57	-0.6
4,645,813	+		HGI48_RS20800	0.70	-0.6
4,645,813	+		HGI48_RS20800	0.70	-0.9
4,645,813	+		HGI48_RS20800	0.70	+0.7
4,645,813	+				+1.9
4,645,813	+		HGI48_RS20800	0.70	+0.9
4,645,814	-		HGI48_RS20800	0.70	-0.8
4,645,814	-		HGI48_RS20800	0.70	-2.1
4,645,814	-		HGI48_RS20800	0.70	+0.9
4,645,814	-		HGI48_RS20800	0.70	-0.2
4,645,814	-		HGI48_RS20800	0.70	-0.2
4,645,814	-		HGI48_RS20800	0.70	+0.1
4,645,814	-		HGI48_RS20800	0.70	+0.4
4,645,814	-		HGI48_RS20800	0.70	-0.5
4,645,855	-				-0.6
4,646,031	-				-0.9
4,646,210	+		HGI48_RS20805	0.36	-0.1
4,646,210	+		HGI48_RS20805	0.36	-2.1
4,646,211	-		HGI48_RS20805	0.36	-0.1
4,646,211	-		HGI48_RS20805	0.36	-0.8
4,646,276	+		HGI48_RS20805	0.68	-1.4
4,646,276	+		HGI48_RS20805	0.68	-2.1
4,646,276	+		HGI48_RS20805	0.68	-1.2
4,646,276	+		HGI48_RS20805	0.68	+0.2
4,646,277	-		HGI48_RS20805	0.69	+0.2
4,646,336	+				+0.4
4,646,356	+				+0.4
4,646,356	+				-2.1
4,646,356	+				-0.1
4,646,357	-				-1.4
4,646,357	-				+0.6
4,646,357	-				-1.6
4,646,357	-				-0.1
4,646,359	+				-0.4
4,646,359	+				-0.3
4,646,359	+				-0.6
4,646,360	-				+0.5
4,646,360	-				-1.5
4,646,362	+				+1.5
4,646,363	-				+0.4
4,646,462	+				+1.3
4,646,462	+				-0.6
4,646,462	+				-1.6
4,646,463	-				-1.2
4,646,463	-				-1.1
4,646,480	+				+0.1
4,646,481	-				-2.6
4,646,548	+				-1.6
4,646,549	-				+2.5
4,646,633	+		HGI48_RS20810	0.12	+0.6
4,646,633	+		HGI48_RS20810	0.12	-2.2
4,646,633	+		HGI48_RS20810	0.12	-1.1
4,646,633	+		HGI48_RS20810	0.12	-1.4
4,646,633	+		HGI48_RS20810	0.12	+0.9
4,646,633	+		HGI48_RS20810	0.12	-1.4
4,646,633	+		HGI48_RS20810	0.12	-1.5
4,646,633	+		HGI48_RS20810	0.12	-1.4
4,646,634	-		HGI48_RS20810	0.12	-0.9
4,646,634	-		HGI48_RS20810	0.12	-2.1
4,646,634	-		HGI48_RS20810	0.12	+0.3
4,646,634	-		HGI48_RS20810	0.12	-0.5
4,646,634	-		HGI48_RS20810	0.12	+0.1
4,646,634	-		HGI48_RS20810	0.12	-0.6
4,646,634	-		HGI48_RS20810	0.12	-0.6
4,646,649	+		HGI48_RS20810	0.13	-3.2
4,646,670	+		HGI48_RS20810	0.16	-0.6
4,646,675	+		HGI48_RS20810	0.16	-1.1
4,646,675	+		HGI48_RS20810	0.16	-0.1
4,646,675	+		HGI48_RS20810	0.16	-1.4
4,646,675	+		HGI48_RS20810	0.16	-0.1
4,646,675	+		HGI48_RS20810	0.16	-1.9
4,646,675	+		HGI48_RS20810	0.16	-1.6
4,646,675	+		HGI48_RS20810	0.16	-2.1
4,646,675	+		HGI48_RS20810	0.16	-0.6
4,646,675	+		HGI48_RS20810	0.16	+1.3
4,646,676	-		HGI48_RS20810	0.16	+0.9
4,646,676	-		HGI48_RS20810	0.16	-1.4
4,646,676	-		HGI48_RS20810	0.16	-1.6
4,646,676	-		HGI48_RS20810	0.16	-0.5
4,646,676	-		HGI48_RS20810	0.16	-1.2
4,646,756	-		HGI48_RS20810	0.25	-1.6
4,646,789	+				-0.6
4,646,789	+		HGI48_RS20810	0.28	-2.6
4,646,790	-		HGI48_RS20810	0.28	-0.9
4,646,790	-		HGI48_RS20810	0.28	-1.6
4,646,821	+		HGI48_RS20810	0.32	-1.6
4,646,822	-		HGI48_RS20810	0.32	+0.1
4,646,828	+		HGI48_RS20810	0.32	+0.7
4,646,828	+		HGI48_RS20810	0.32	-0.6
4,646,829	-		HGI48_RS20810	0.33	-0.3
4,646,831	+		HGI48_RS20810	0.33	-1.1
4,646,915	+		HGI48_RS20810	0.42	-1.9
4,646,915	+		HGI48_RS20810	0.42	-1.6
4,646,915	+		HGI48_RS20810	0.42	+2.1
4,646,915	+		HGI48_RS20810	0.42	-2.3
4,646,916	-		HGI48_RS20810	0.42	-0.8
4,646,916	-		HGI48_RS20810	0.42	-2.9
4,646,916	-		HGI48_RS20810	0.42	+0.1
4,646,916	-		HGI48_RS20810	0.42	-1.1
4,646,916	-		HGI48_RS20810	0.42	-2.1
4,646,916	-		HGI48_RS20810	0.42	-0.1
4,646,916	-		HGI48_RS20810	0.42	-1.9
4,646,916	-		HGI48_RS20810	0.42	-0.9
4,646,916	-		HGI48_RS20810	0.42	-0.6
4,646,921	+				-0.1
4,646,921	+		HGI48_RS20810	0.42	-0.5
4,646,922	-		HGI48_RS20810	0.43	-2.3
4,646,922	-		HGI48_RS20810	0.43	-0.1
4,646,922	-		HGI48_RS20810	0.43	-1.1
4,646,922	-		HGI48_RS20810	0.43	-0.9
4,646,922	-		HGI48_RS20810	0.43	+0.2
4,646,922	-		HGI48_RS20810	0.43	-2.2
4,646,922	-		HGI48_RS20810	0.43	-3.1
4,646,922	-		HGI48_RS20810	0.43	-1.9
4,646,935	+		HGI48_RS20810	0.44	-1.8
4,646,936	-		HGI48_RS20810	0.44	-2.1
4,647,032	+		HGI48_RS20810	0.54	-0.6
4,647,238	+		HGI48_RS20810	0.76	-1.1
4,647,274	+		HGI48_RS20810	0.80	-2.1
4,647,274	+		HGI48_RS20810	0.80	-1.1
4,647,275	-		HGI48_RS20810	0.80	-0.5
4,647,275	-		HGI48_RS20810	0.80	-2.5
4,647,284	-		HGI48_RS20810	0.81	+0.8
4,647,336	-		HGI48_RS20810	0.87	+0.9
4,647,345	+		HGI48_RS20810	0.88	-2.1
4,647,345	+		HGI48_RS20810	0.88	-0.9
4,647,345	+		HGI48_RS20810	0.88	-0.1
4,647,431	-				-1.1
4,647,522	+		HGI48_RS20815	0.14	+1.4
4,647,523	-		HGI48_RS20815	0.14	-0.8
4,647,536	+		HGI48_RS20815	0.21	+0.0
4,647,536	+				-0.1
4,647,537	-		HGI48_RS20815	0.21	+1.4
4,647,537	-		HGI48_RS20815	0.21	+0.8
4,647,538	+				+0.9
4,647,538	+		HGI48_RS20815	0.22	-0.1
4,647,538	+		HGI48_RS20815	0.22	-0.4
4,647,539	-				+1.5
4,647,544	+		HGI48_RS20815	0.25	-0.1
4,647,575	+		HGI48_RS20815	0.40	-1.4
4,647,583	-		HGI48_RS20815	0.44	+1.2
4,647,583	-		HGI48_RS20815	0.44	+0.2
4,647,626	+		HGI48_RS20815	0.66	+0.4
4,647,628	+		HGI48_RS20815	0.67	-1.4
4,647,628	+		HGI48_RS20815	0.67	+0.3
4,647,651	+		HGI48_RS20815	0.79	+0.9
4,647,652	-		HGI48_RS20815	0.79	-0.3
4,647,652	-		HGI48_RS20815	0.79	-1.6
4,647,652	-				+2.2
4,647,654	-		HGI48_RS20815	0.80	+0.3
4,647,654	-		HGI48_RS20815	0.80	-1.1
4,647,654	-		HGI48_RS20815	0.80	-0.1
4,647,654	-		HGI48_RS20815	0.80	+0.4
4,647,671	+		HGI48_RS20815	0.89	-0.4
4,647,671	+		HGI48_RS20815	0.89	-1.1
4,647,671	+		HGI48_RS20815	0.89	-0.9
4,647,672	-		HGI48_RS20815	0.89	-0.3
4,647,672	-		HGI48_RS20815	0.89	-0.6
4,647,683	+				+0.9
4,647,683	+				-0.6
4,647,683	+				-2.1
4,647,684	-				-0.3
4,647,684	-				+0.4
4,647,716	+				+0.4
4,647,789	+				+0.9
4,647,821	-				+0.6
4,648,008	+		HGI48_RS20820	0.47	-1.6
4,648,008	+		HGI48_RS20820	0.47	+1.2
4,648,008	+		HGI48_RS20820	0.47	-1.1
4,648,009	-				-0.6
4,648,009	-		HGI48_RS20820	0.47	+0.6
4,648,009	-		HGI48_RS20820	0.47	+0.2
4,648,009	-		HGI48_RS20820	0.47	+0.7
4,648,009	-		HGI48_RS20820	0.47	+0.1
4,648,009	-		HGI48_RS20820	0.47	+0.7
4,648,009	-		HGI48_RS20820	0.47	-0.4
4,648,009	-		HGI48_RS20820	0.47	-2.1
4,648,009	-		HGI48_RS20820	0.47	-1.1
4,648,014	+		HGI48_RS20820	0.48	+2.8
4,648,014	+		HGI48_RS20820	0.48	-0.1
4,648,014	+		HGI48_RS20820	0.48	+0.1
4,648,014	+		HGI48_RS20820	0.48	-2.5
4,648,023	+		HGI48_RS20820	0.50	+1.2
4,648,046	+		HGI48_RS20820	0.54	-1.4
4,648,046	+		HGI48_RS20820	0.54	-0.3
4,648,046	+		HGI48_RS20820	0.54	+0.5
4,648,047	-				+0.9
4,648,047	-		HGI48_RS20820	0.55	+0.1
4,648,047	-				+1.9
4,648,047	-		HGI48_RS20820	0.55	+0.5
4,648,102	+		HGI48_RS20820	0.66	+0.8
4,648,102	+		HGI48_RS20820	0.66	-2.2
4,648,102	+		HGI48_RS20820	0.66	-0.2
4,648,193	+				+0.9
4,648,193	+		HGI48_RS20820	0.84	-0.2
4,648,194	-		HGI48_RS20820	0.84	+0.2
4,648,252	+				-0.5
4,648,252	+				-1.1
4,648,272	-				+0.0
4,648,272	-				+1.9
4,648,272	-				-3.5
4,648,300	+				-1.4
4,648,300	+				+0.7
4,648,300	+				-0.3
4,648,301	-				-1.2
4,648,301	-				-1.1
4,648,301	-				-1.6
4,648,301	-				-1.9
4,648,324	-				+0.9
4,648,324	-				-0.1
4,648,330	+				-0.4
4,648,330	+				+0.9
4,648,330	+				-0.4
4,648,331	-				-0.1
4,648,333	+				-0.8
4,648,334	-				-0.8
4,648,364	+				+0.1
4,648,364	+				+1.5
4,648,365	-				-0.3
4,648,365	-				+0.4
4,648,375	+				-0.9
4,648,375	+				-1.1
4,648,375	+				+0.3
4,648,376	-				+0.5
4,648,376	-				+0.9
4,648,376	-				+0.7
4,648,376	-				-0.6
4,648,376	-				+0.1
4,648,376	-				-1.6
4,648,376	-				+0.9
4,648,378	+				+0.2
4,648,378	+				+1.4
4,648,378	+				+0.8
4,648,378	+				-1.4
4,648,378	+				-0.4
4,648,378	+				-0.8
4,648,379	-				+0.5
4,648,379	-				+0.0
4,648,379	-				-1.4
4,648,379	-				+1.5
4,648,379	-				-1.3
4,648,379	-				-1.8
4,648,451	+				-1.4